BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032883
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX22|RRP31_ARATH 30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana
GN=At1g68590 PE=1 SV=1
Length = 166
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 73/122 (59%), Gaps = 11/122 (9%)
Query: 1 MLSSMALQST-VNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESL 59
M+SSMAL ST + +F S P +T P + H TKPIS ++++ LA PE+L
Sbjct: 1 MMSSMALSSTSLCSSFI--SQHPKLSITASPP---LFHTQTTKPISVKRKIITLAAPETL 55
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAI 119
TAE T T +T TP +T K VK EK R+VLKF+WMEKNIGL LDQ +PG I
Sbjct: 56 TAE--TVTGIDTSDNTPQQTIKV---VKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTI 110
Query: 120 LL 121
L
Sbjct: 111 PL 112
>sp|P82412|RRP3_SPIOL 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea
GN=PSRP3 PE=1 SV=1
Length = 179
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 4 SMALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNR---TKP----ISRNQRLVALATP 56
SMA+Q +N A S + S KL++KP KT + + P + + P
Sbjct: 3 SMAVQPNIN-AIAKPSIYQSPKLSLKPFKTPAFANPKPFFSSPSFSQLKKKNNWSLFVAP 61
Query: 57 ESLTAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPG 115
E+++ + V +K V VK ++KPRLVLKFIWMEKNIGLALDQ+IPG
Sbjct: 62 ETISDVAIMGNEVDIDDDLLVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPG 120
>sp|Q9LFV0|RRP32_ARATH 30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g15760 PE=2 SV=1
Length = 183
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 5 MALQSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISR--------NQRLV----A 52
MA+Q+ + +F R++ PSQKL+ KP L + KP SR NQ + +
Sbjct: 1 MAVQANQSASFGFRTASPSQKLSSKPIAHISL-STKLKPSSRPSLSCSTWNQGQIPARHS 59
Query: 53 LATPESLTAEEATTTSTETIPAT---PVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLAL 109
P + T + +P + P+ KK V VK LEKP++VLKF+WM+K+IG+AL
Sbjct: 60 CINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKDIGVAL 119
Query: 110 DQSIPGAVAILL 121
D IPG I L
Sbjct: 120 DHMIPGFGTIPL 131
>sp|O48609|RRP3_HORVU 30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare GN=PSRP3
PE=2 SV=1
Length = 181
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 77 VETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAVAILL 121
VE+++ V V + + P LVLKFIWMEKNIG+ALDQ +PG +I L
Sbjct: 84 VESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPL 128
>sp|Q9BAC5|RRP3_EUGGA Probable 30S ribosomal protein 3, chloroplastic OS=Euglena
granulata GN=ycf65 PE=3 SV=1
Length = 103
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 91 KPRLVLKFIWMEKNIGLALDQSIPGAV 117
K L+LKF+W+EK+I + LDQ + ++
Sbjct: 2 KKELILKFLWLEKSIAVCLDQKVGDSI 28
>sp|P59327|RRP3_THEEB Probable 30S ribosomal protein PSRP-3 OS=Thermosynechococcus
elongatus (strain BP-1) GN=tlr0301 PE=3 SV=1
Length = 108
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 84 VSVKQLEKPRLVLKFIWMEKNIGLALDQ 111
+S ++LE R L+ +W+EK++ +A+DQ
Sbjct: 3 ISFRRLELSRFTLRVLWLEKDVAIAVDQ 30
>sp|B1WYT6|RRP3_CYAA5 Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain
ATCC 51142) GN=cce_1753 PE=3 SV=1
Length = 112
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 84 VSVKQLE---KPRLVLKFIWMEKNIGLALDQSI 113
+S QLE +PR +LK +W++ N+ +A+DQ +
Sbjct: 1 MSFIQLEGQLEPRFILKVLWLDANVAIAVDQVV 33
>sp|Q9MUN2|RRP3_MESVI Probable 30S ribosomal protein 3, chloroplastic OS=Mesostigma
viride GN=ycf65 PE=3 SV=1
Length = 123
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 93 RLVLKFIWMEKNIGLALDQ 111
+ VLKF+W+EKN+ + +DQ
Sbjct: 20 KFVLKFLWLEKNLAVTVDQ 38
>sp|O35181|NRG3_MOUSE Pro-neuregulin-3, membrane-bound isoform OS=Mus musculus GN=Nrg3
PE=1 SV=1
Length = 713
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 6 ALQSTVNGAFTTRSSFP---SQKLTVKPTK-------TTILHQN--RTKPISRNQRLVAL 53
AL+ + +F+ SFP S +P K + +LH+N R P S RL +
Sbjct: 439 ALEKIMESSFSAPQSFPEVTSPDRGSQPIKHHSPGQRSGMLHRNTFRRAPPSPRSRLGGI 498
Query: 54 ATPESLTAEEATTTSTETIPATPVETKKA----GVSVKQLEKPRLVLKFI 99
P EE+ +TIP +E +K + + +E+P L LK++
Sbjct: 499 VGPAYQQLEESRIPDQDTIPCQGIEVRKTISHLPIQLWCVERP-LDLKYV 547
>sp|Q9BAB9|RRP3_EUGVI Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis
GN=ycf65 PE=3 SV=1
Length = 101
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 93 RLVLKFIWMEKNIGLALDQSIPGAVA 118
+ VLKF+W+++++ ++LDQ I V+
Sbjct: 3 KFVLKFLWLQRSVAVSLDQKIGDNVS 28
>sp|Q9BAC0|RRP3_EUGST Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata
GN=ycf65 PE=3 SV=1
Length = 101
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 94 LVLKFIWMEKNIGLALDQSI 113
+LKF+W+EK++ + LDQ I
Sbjct: 4 FILKFLWLEKSVAVGLDQKI 23
>sp|Q7VA74|RRP3_PROMA Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=Pro_1593 PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPGAVAIL 120
++ R +LK +W+ N+ LA+DQ + G + L
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIVGGGTSPL 57
>sp|Q7V5U0|RRP3_PROMM Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
(strain MIT 9313) GN=PMT_1454 PE=3 SV=2
Length = 126
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPGA 116
++ R +LK +W+ N+ LA+DQ + G
Sbjct: 27 DEGRFLLKILWLPDNVALAVDQIVGGG 53
>sp|Q7V048|RRP3_PROMP Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3
SV=2
Length = 126
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 90 EKPRLVLKFIWMEKNIGLALDQSIPGA 116
++ R ++K +W+ N+ LA+DQ + G
Sbjct: 27 DEGRFIIKILWLPDNVALAVDQIVGGG 53
>sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein RnfD OS=Sodalis glossinidius
(strain morsitans) GN=rnfD PE=3 SV=1
Length = 346
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 20 SFPSQKLTVKPTKTTILHQNRTKPISRNQRLVAL---ATPESLTAEEATTTSTETIPATP 76
SFP Q + P ++ +LH P+S + + TP+ LT + T ATP
Sbjct: 134 SFPVQMTSWSPQQSLLLH-----PVSLTDSMALIFTGVTPDGLTLTQLRATVDGITQATP 188
Query: 77 VETKKAGVSVKQLEKPRLVLKF----IWMEKNIGLALDQSIPGAVAIL---LLSWMKIPV 129
++ K G+ + + W NIG L G + ++ ++SW IP+
Sbjct: 189 LDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLL-----GGLYLIWRRVISW-HIPL 242
Query: 130 SL 131
SL
Sbjct: 243 SL 244
>sp|Q6ANH1|ADEC2_DESPS Adenine deaminase 2 OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=ade2 PE=3 SV=1
Length = 576
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 60 TAEEATTTSTETIPATPVETKKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQSIPGAV 117
TA + +PATP E A + +++EKP I ++ +GL PG +
Sbjct: 126 TALDVQMMLPSCVPATPFEHSGANIDAREMEKP------ITYDEVLGLGEFMDFPGVI 177
>sp|A6VP15|GLGB_ACTSZ 1,4-alpha-glucan branching enzyme GlgB OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=glgB PE=3
SV=1
Length = 829
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 8 QSTVNGAFTTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEATTT 67
++T +GA T + + K T TK T+ + KP V AT S+T + AT
Sbjct: 743 KTTADGAEATAKNASASKATKVSTKKTV-KSSEAKP-------VKAATKSSVT-KVATKK 793
Query: 68 STETIPATPVETKKAGVS 85
ST+ A TKKA V+
Sbjct: 794 STDKPTAKATRTKKATVT 811
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 16 TTRSSFPSQKLTVKPTKTTILHQNRTKPISRNQRLVALATPESLTAEEATTTSTETIP 73
TT SSF ++ LTVK KP R + V T T+ E T+T T +P
Sbjct: 4576 TTHSSFGTRSLTVK----------HLKPFHRYEVRVQACTALGCTSSEWTSTQTSEVP 4623
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,342,337
Number of Sequences: 539616
Number of extensions: 1362951
Number of successful extensions: 4930
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 4670
Number of HSP's gapped (non-prelim): 292
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)