Query 032883
Match_columns 131
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt9_A Probable 30S ribosomal 99.9 1.2E-22 3.9E-27 151.5 4.8 41 89-130 5-45 (116)
2 3bbo_W Ribosomal protein L24; 20.2 22 0.00074 28.1 0.0 26 2-27 1-26 (191)
3 3gsd_A Divalent-cation toleran 10.9 67 0.0023 23.2 0.5 22 101-128 42-63 (122)
4 4e98_A CUTA1 divalent ION tole 10.5 69 0.0024 23.7 0.5 22 101-128 57-78 (138)
5 4gio_A Putative lipoprotein; u 10.4 1.9E+02 0.0067 19.9 2.8 28 81-109 39-66 (107)
6 2c7w_A Vascular endothelial gr 9.6 83 0.0028 21.7 0.6 9 121-129 33-41 (99)
7 3h2z_A Mannitol-1-phosphate 5- 9.4 79 0.0027 26.2 0.5 29 100-128 145-183 (382)
8 4hqu_A Platelet-derived growth 8.9 97 0.0033 21.6 0.7 7 123-129 36-42 (109)
9 1wq8_A VR-1, VEGF-F, vascular 8.4 97 0.0033 21.8 0.5 8 122-129 31-38 (110)
10 3m4w_A Sigma-E factor regulato 8.1 4.1E+02 0.014 21.1 4.2 27 86-113 123-149 (295)
No 1
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=99.86 E-value=1.2e-22 Score=151.54 Aligned_cols=41 Identities=27% Similarity=0.557 Sum_probs=38.9
Q ss_pred CCCCeEEEEEEeeeCceEEEeeeeecCCCcccceeeeecccC
Q 032883 89 LEKPRLVLKFIWMEKNIGLALDQSIPGAVAILLLSWMKIPVS 130 (131)
Q Consensus 89 ~~~~rfvLK~LWleknIgiAlDQvv~g~~t~PLT~YfFWPr~ 130 (131)
+-++||+||||||||||||||||++ |+|++|||+||||||+
T Consensus 5 ~~m~rf~LKvlWlek~IaiAvDQ~v-g~~t~PLT~YfFWPr~ 45 (116)
T 2kt9_A 5 TVHTSFILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRA 45 (116)
T ss_dssp CCCCCEEEEEEECSSCEEEEEEEEE-TTEEEECSCCEEETTS
T ss_pred hhhhhheeeEEEeccceeEEeeeee-cCCCCCCcceeeCCCc
Confidence 3478999999999999999999999 9999999999999997
No 2
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.23 E-value=22 Score=28.08 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=0.0
Q ss_pred ccccccccccccccceecccCCCCcc
Q 032883 2 LSSMALQSTVNGAFTTRSSFPSQKLT 27 (131)
Q Consensus 2 ~~sMA~Q~~~~s~~~~~ss~psq~~s 27 (131)
|+.||+|+...+-..+.++|--|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (191)
T 3bbo_W 1 MAAMVLQSSFTSLSLSSNSFLGQRLF 26 (191)
T ss_dssp --------------------------
T ss_pred CcchhhhhhhhccccccccccCcccC
Confidence 67899998876655544555555554
No 3
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=10.89 E-value=67 Score=23.22 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=14.8
Q ss_pred eeCceEEEeeeeecCCCcccceeeeecc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIP 128 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWP 128 (131)
+|+.+|-|+ |+++ ++++.|.|=
T Consensus 42 ve~rLAACV-ni~p-----~i~S~Y~W~ 63 (122)
T 3gsd_A 42 LGEKLAACV-TLLP-----GATSLYYWE 63 (122)
T ss_dssp HHTTSCSEE-EEEE-----EEEEEEEET
T ss_pred HHCCceEEE-EecC-----CeeEEEEEC
Confidence 456667676 4552 489999994
No 4
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=10.53 E-value=69 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=15.2
Q ss_pred eeCceEEEeeeeecCCCcccceeeeecc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIP 128 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWP 128 (131)
+|+.+|-|+ |++| +++++|.|=
T Consensus 57 Ve~rLAACV-nI~p-----~i~SiY~We 78 (138)
T 4e98_A 57 VDEELCACV-SIIP-----SVRSIYKFK 78 (138)
T ss_dssp HHTTSCSEE-EEEE-----EEEEEEEET
T ss_pred HHCCceeEE-EecC-----CeeEEEEeC
Confidence 466677777 4452 489999994
No 5
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=10.38 E-value=1.9e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=19.6
Q ss_pred ccceeeecCCCCeEEEEEEeeeCceEEEe
Q 032883 81 KAGVSVKQLEKPRLVLKFIWMEKNIGLAL 109 (131)
Q Consensus 81 k~~~~v~~~~~~rfvLK~LWleknIgiAl 109 (131)
+..|..+......+.-||-|+|++ |+-|
T Consensus 39 ~v~v~~~s~~~~~l~Yrf~WyD~~-G~~v 66 (107)
T 4gio_A 39 EFEVILRSTFAKDVIYKVDWLDKD-GFVL 66 (107)
T ss_dssp EEEEEECCSSCEEEEEEEEEECTT-SCBC
T ss_pred EEEEEecCCCceEEEEEEEEECCC-CCCc
Confidence 344445666667899999999986 5544
No 6
>2c7w_A Vascular endothelial growth factor B precursor; angiogenesis, cysteine-knot motif, tyrosine kinase, ischemia, mitogen, glycoprotein; 2.48A {Homo sapiens} PDB: 2xac_A
Probab=9.60 E-value=83 Score=21.70 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=7.2
Q ss_pred ceeeeeccc
Q 032883 121 LLSWMKIPV 129 (131)
Q Consensus 121 LT~YfFWPr 129 (131)
-++|+|||.
T Consensus 33 ~~~~~y~P~ 41 (99)
T 2c7w_A 33 TVAKQLVPS 41 (99)
T ss_dssp CCCSEEESS
T ss_pred CCCceEECC
Confidence 368999996
No 7
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Probab=9.41 E-value=79 Score=26.24 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=19.8
Q ss_pred eeeCceEE---EeeeeecCC-----Ccccce--eeeecc
Q 032883 100 WMEKNIGL---ALDQSIPGA-----VAILLL--SWMKIP 128 (131)
Q Consensus 100 WleknIgi---AlDQvv~g~-----~t~PLT--~YfFWP 128 (131)
|++++++. .||+|+|.. ...|++ +|+.|.
T Consensus 145 wi~~~v~Fp~smVDRIvP~~~~g~~D~~~V~~E~f~~wV 183 (382)
T 3h2z_A 145 WVEEHVGFVDSAVDRIVPPSASATNDPLEVTVETFSEWI 183 (382)
T ss_dssp HHHHHEEEECEEEECCCCC-----CCSSCEEEESCCEEE
T ss_pred HHHcCCCCcCcccccCcChhhcCCCCccceeeeccccce
Confidence 99999996 689999851 223333 577775
No 8
>4hqu_A Platelet-derived growth factor subunit B; growth factor, selex, aptamer, 5-modified deoxyuridine, HORM complex; HET: DUZ A2M UPE 18Q 18M; 2.20A {Homo sapiens} PDB: 1pdg_A* 4hqx_A*
Probab=8.91 E-value=97 Score=21.59 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=5.5
Q ss_pred eeeeccc
Q 032883 123 SWMKIPV 129 (131)
Q Consensus 123 ~YfFWPr 129 (131)
.|+|||+
T Consensus 36 ~~~~~P~ 42 (109)
T 4hqu_A 36 NFLVWPP 42 (109)
T ss_dssp CEEEECS
T ss_pred ceEEcCC
Confidence 6888885
No 9
>1wq8_A VR-1, VEGF-F, vascular endothelial growth factor toxin; snake venom; 1.90A {Vipera aspis aspis} SCOP: g.17.1.1 PDB: 1wq9_A
Probab=8.37 E-value=97 Score=21.83 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=6.8
Q ss_pred eeeeeccc
Q 032883 122 LSWMKIPV 129 (131)
Q Consensus 122 T~YfFWPr 129 (131)
++++|||.
T Consensus 31 ~~~~f~P~ 38 (110)
T 1wq8_A 31 ISDIFRPS 38 (110)
T ss_dssp CSSEEESS
T ss_pred CCceEECC
Confidence 78899996
No 10
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=8.13 E-value=4.1e+02 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=20.4
Q ss_pred eecCCCCeEEEEEEeeeCceEEEeeeee
Q 032883 86 VKQLEKPRLVLKFIWMEKNIGLALDQSI 113 (131)
Q Consensus 86 v~~~~~~rfvLK~LWleknIgiAlDQvv 113 (131)
+.|.+..||.-++ |+|+.-|+=|=..+
T Consensus 123 l~PkD~~ry~y~l-WiD~et~lpLk~e~ 149 (295)
T 3m4w_A 123 VVARDGTRYSYIV-WMDTESKLPMRVDL 149 (295)
T ss_dssp EEETTSCSCEEEE-EEETTTCCEEEEEE
T ss_pred EEECCCCceeEEE-EEEccCCCEEEEEE
Confidence 4788889998877 99888777664433
Done!