Query 032883
Match_columns 131
No_of_seqs 70 out of 72
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 11:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ukua_ d.58.5.2 (A:) Cut A1 { 22.1 11 0.0008 24.5 0.5 21 101-128 22-42 (102)
2 d1kr4a_ d.58.5.2 (A:) Hypothet 19.7 13 0.00097 24.4 0.5 21 101-128 29-49 (110)
3 d2ch4w1 b.40.7.1 (W:9-147) Che 17.4 58 0.0042 20.1 3.3 23 91-113 69-91 (139)
4 d1p1la_ d.58.5.2 (A:) Cut A1 { 15.0 20 0.0015 23.2 0.5 21 101-128 23-43 (102)
5 d1fltv_ g.17.1.1 (V:) Vascular 10.4 34 0.0025 21.8 0.5 8 122-129 31-38 (95)
6 d1xdpa2 d.322.1.2 (A:107-314) 9.0 13 0.00091 26.8 -2.4 37 80-116 61-108 (208)
7 d1pdga_ g.17.1.1 (A:) Platelet 8.8 39 0.0029 21.6 0.3 7 123-129 28-34 (96)
8 d2o8ra2 d.322.1.2 (A:113-317) 8.3 22 0.0016 25.4 -1.2 39 80-118 63-112 (205)
9 d1nzaa_ d.58.5.2 (A:) Cut A1 { 8.2 52 0.0038 21.0 0.7 23 101-129 23-45 (103)
10 d1wq8a_ g.17.1.1 (A:) Vascular 7.8 50 0.0036 21.2 0.5 8 122-129 31-38 (100)
No 1
>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.06 E-value=11 Score=24.55 Aligned_cols=21 Identities=0% Similarity=-0.133 Sum_probs=15.8
Q ss_pred eeCceEEEeeeeecCCCcccceeeeecc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIP 128 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWP 128 (131)
+++++|-|+. +. |++++|.|=
T Consensus 22 v~~~LaACvn-i~------~i~S~Y~W~ 42 (102)
T d1ukua_ 22 LKERLIACAN-LR------EHRAFYWWE 42 (102)
T ss_dssp HHTTSCSEEE-EE------EEEEEEEET
T ss_pred HHcCeEEEEE-ec------CceEEEEeh
Confidence 4677888885 44 678999994
No 2
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]}
Probab=19.68 E-value=13 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=15.6
Q ss_pred eeCceEEEeeeeecCCCcccceeeeecc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIP 128 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWP 128 (131)
+++++|-|+. ++ |++++|.|=
T Consensus 29 v~~kLaACvn-i~------~i~S~Y~W~ 49 (110)
T d1kr4a_ 29 LEKRLIACFN-AF------EIRSGYWWK 49 (110)
T ss_dssp HHTTSCSEEE-EE------EEEEEEEET
T ss_pred HHcCeEEEEE-ee------cccEEeeeh
Confidence 4677777776 44 789999994
No 3
>d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
Probab=17.39 E-value=58 Score=20.14 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.1
Q ss_pred CCeEEEEEEeeeCceEEEeeeee
Q 032883 91 KPRLVLKFIWMEKNIGLALDQSI 113 (131)
Q Consensus 91 ~~rfvLK~LWleknIgiAlDQvv 113 (131)
+...++-+-+-++.+|+.+|++.
T Consensus 69 ~~~~~iv~~~~~~~~gl~Vd~v~ 91 (139)
T d2ch4w1 69 KMKSIIVARTKDVEVGFLVDRVL 91 (139)
T ss_dssp TCCEEEEEECSSCEEEEEESEEE
T ss_pred CceEEEEEeecCcEEEEEeeeEe
Confidence 44566667777889999999986
No 4
>d1p1la_ d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.01 E-value=20 Score=23.20 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=14.3
Q ss_pred eeCceEEEeeeeecCCCcccceeeeecc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIP 128 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWP 128 (131)
++++++-|+. ++ |++++|+|=
T Consensus 23 l~~kLaACvn-i~------~i~S~Y~W~ 43 (102)
T d1p1la_ 23 LEKKLAACVN-IF------PIKSFFWWE 43 (102)
T ss_dssp HHTTSCSEEE-EE------EEEEEEEET
T ss_pred HHcCeEEEEE-ee------eEEEEEEeC
Confidence 3566666654 33 789999994
No 5
>d1fltv_ g.17.1.1 (V:) Vascular endothelial growth factor, VEGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.43 E-value=34 Score=21.85 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=6.7
Q ss_pred eeeeeccc
Q 032883 122 LSWMKIPV 129 (131)
Q Consensus 122 T~YfFWPr 129 (131)
++|+|||+
T Consensus 31 ~~~~y~P~ 38 (95)
T d1fltv_ 31 IEYIFKPS 38 (95)
T ss_dssp CSSEEESS
T ss_pred CCceEECC
Confidence 58899996
No 6
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=9.01 E-value=13 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.3
Q ss_pred cccceeeecCC-CCeEEE----------EEEeeeCceEEEeeeeecCC
Q 032883 80 KKAGVSVKQLE-KPRLVL----------KFIWMEKNIGLALDQSIPGA 116 (131)
Q Consensus 80 ~k~~~~v~~~~-~~rfvL----------K~LWleknIgiAlDQvv~g~ 116 (131)
.+.+++.-|.+ .+||+- .|++||.-|...+|++++|.
T Consensus 61 ~~~a~i~iP~~~lpRfi~lP~~~~~~~~~fi~lEdiI~~~l~~lFpg~ 108 (208)
T d1xdpa2 61 IRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGF 108 (208)
T ss_dssp EEEEEEECCTTTSCSEEECCCSSSTTCCEEEEHHHHHHHHHHHHHTTT
T ss_pred cceEEEEcccccCCcEEEeccccCCCceeEEEHHHHHHHHHHHhcccc
Confidence 55677777765 799885 39999999999999999884
No 7
>d1pdga_ g.17.1.1 (A:) Platelet-derived growth factor BB {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=39 Score=21.61 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=4.9
Q ss_pred eeeeccc
Q 032883 123 SWMKIPV 129 (131)
Q Consensus 123 ~YfFWPr 129 (131)
.|+|||+
T Consensus 28 ~~~y~P~ 34 (96)
T d1pdga_ 28 NFLVWPP 34 (96)
T ss_dssp -CCEESS
T ss_pred ceEEeCC
Confidence 6888985
No 8
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=8.29 E-value=22 Score=25.36 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred cccceeeecCC-CCeEE-E---------EEEeeeCceEEEeeeeecCCCc
Q 032883 80 KKAGVSVKQLE-KPRLV-L---------KFIWMEKNIGLALDQSIPGAVA 118 (131)
Q Consensus 80 ~k~~~~v~~~~-~~rfv-L---------K~LWleknIgiAlDQvv~g~~t 118 (131)
.+.++|.-|.+ .+||+ | +|++||.-|.-.+|.+++|...
T Consensus 63 ~~~a~v~iPs~~lpRfv~lP~~~~~~~~~~i~lediI~~~l~~LFpg~~v 112 (205)
T d2o8ra2 63 YSYALLNVPTDGLPRFVELPRLQTDTFYYYSFLEDIIKEHLDVVFPGYEV 112 (205)
T ss_dssp CEEEEEECCTTTSCSEEEECCCTTCSCEEEEEHHHHHHTTHHHHCTTSEE
T ss_pred ceeEEEeccccCCCcEEEcCcccCCCceEEeeHHHHHHHHHHHhcCCcEE
Confidence 34666767765 59988 3 5999999999999999987643
No 9
>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]}
Probab=8.16 E-value=52 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=13.9
Q ss_pred eeCceEEEeeeeecCCCcccceeeeeccc
Q 032883 101 MEKNIGLALDQSIPGAVAILLLSWMKIPV 129 (131)
Q Consensus 101 leknIgiAlDQvv~g~~t~PLT~YfFWPr 129 (131)
++++++-|+. +++ +++++|.|=.
T Consensus 23 l~~kLaACvn-i~~-----~i~S~Y~W~g 45 (103)
T d1nzaa_ 23 VEERLAACVN-IVP-----GLTSIYRWQG 45 (103)
T ss_dssp HHTTSCSEEE-EEE-----EEEEEEESSS
T ss_pred HHcCeEEEEe-cCC-----CeeEEEEECC
Confidence 3555665553 332 5899999943
No 10
>d1wq8a_ g.17.1.1 (A:) Vascular endothelial growth factor, VEGF {Aspic viper (Vipera aspis aspis) [TaxId: 8706]}
Probab=7.84 E-value=50 Score=21.18 Aligned_cols=8 Identities=25% Similarity=0.136 Sum_probs=6.5
Q ss_pred eeeeeccc
Q 032883 122 LSWMKIPV 129 (131)
Q Consensus 122 T~YfFWPr 129 (131)
++++|||+
T Consensus 31 ~~~~y~P~ 38 (100)
T d1wq8a_ 31 ISDIFRPS 38 (100)
T ss_dssp CSSEEESS
T ss_pred cCceEeCC
Confidence 67888996
Done!