BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032884
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
 pdb|3R9S|B Chain B, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
 pdb|3R9S|C Chain C, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
          Length = 267

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 60  LFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFII 97
           +F +A Q+   +A R    G+PLS   +R W +I  ++
Sbjct: 150 VFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187


>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
 pdb|3R9T|B Chain B, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
 pdb|3R9T|C Chain C, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
          Length = 267

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 60  LFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFII 97
           +F +A Q+   +A R    G+PLS   +R W +I  ++
Sbjct: 150 VFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187


>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding
          Protein Moda
 pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding
          Protein Moda
 pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding
          Protein Moda
 pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding
          Protein Moda
          Length = 240

 Score = 25.8 bits (55), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 20 LAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLAS 65
          L V AE+R     +  D E   +YC+      TG G   FL L+A 
Sbjct: 3  LKVRAEKRLGNFRLNVDFEMGRDYCVLLG--PTGAGKSVFLELIAG 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.143    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,375,426
Number of Sequences: 62578
Number of extensions: 117652
Number of successful extensions: 312
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 46 (22.3 bits)