Query 032884
Match_columns 131
No_of_seqs 117 out of 199
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 13.4 1.6E+02 0.0054 18.8 2.8 41 39-81 7-47 (67)
2 2fz0_A R-snare NYV1P, V-snare 11.3 1.2E+02 0.0041 22.1 2.0 21 29-49 64-84 (149)
3 3dd7_B PHD, prevent HOST death 9.6 95 0.0032 15.9 0.6 11 112-122 7-17 (23)
4 1a6s_A GAG polyprotein; core p 9.3 1.5E+02 0.0052 19.7 1.8 26 66-92 3-29 (87)
5 2jo1_A Phospholemman; FXYD1, N 9.1 3.1E+02 0.011 17.6 3.2 39 41-81 8-46 (72)
6 2zxe_G FXYD10, phospholemman-l 6.5 3.4E+02 0.011 17.6 2.4 40 40-81 10-49 (74)
7 2lk9_A Bone marrow stromal ant 6.1 3.7E+02 0.013 14.9 2.1 21 3-23 10-30 (35)
8 3kl4_B DPAP B, YSCV, signal pe 6.0 2.3E+02 0.0077 16.1 1.2 8 107-114 21-28 (42)
9 1p9i_A Cortexillin I/GCN4 hybr 5.8 2.2E+02 0.0077 15.1 1.0 16 18-33 7-22 (31)
10 2rh1_A Beta-2-adrenergic recep 5.7 7.1E+02 0.024 19.6 4.5 34 90-125 412-445 (500)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=13.40 E-value=1.6e+02 Score=18.82 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCcceeecCCChhhhhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 032884 39 KNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKP 81 (131)
Q Consensus 39 ~~~~~C~Yps~~A~~LGv~A~v~Ll~aqvv~~~~~~C~Ccg~~ 81 (131)
++..+.-|.+=.--||-+++.+|+ .-+++..+.+|-|+.+.
T Consensus 7 ~dpF~YDY~tLRigGLifA~vLfi--~GI~iilS~kcrCk~~q 47 (67)
T 2jp3_A 7 GSPFYYDWESLQLGGLIFGGLLCI--AGIALALSGKCKCRRNH 47 (67)
T ss_dssp TSGGGGGGHHHHHHHHHHHHHHHH--HHHHHHHTTHHHHHHTC
T ss_pred CCCcccchHHheecchhhHHHHHH--HHHHHHHcCcccccCCC
Confidence 345566665544445544444433 33455556789887654
No 2
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=11.34 E-value=1.2e+02 Score=22.13 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=12.5
Q ss_pred cceeeeccCCCCcceeecCCC
Q 032884 29 STATIQTDSEKNYNYCIYDSD 49 (131)
Q Consensus 29 ~~~~~~~~~~~~~~~C~Yps~ 49 (131)
||++.+..+--|+..|.|..+
T Consensus 64 NKVTKmS~~LIDGyDCYYtT~ 84 (149)
T 2fz0_A 64 NKVTKMSMNLIDGFDCFYSTD 84 (149)
T ss_dssp CSSEECCSCCSSSEEEEECCC
T ss_pred CeEEEEeeeccccceeeeecc
Confidence 344433333346789999983
No 3
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=9.58 E-value=95 Score=15.85 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=8.2
Q ss_pred HHhhhcchhHH
Q 032884 112 WTLLDRFGQIL 122 (131)
Q Consensus 112 gt~~~~~~~~~ 122 (131)
+.+|+|||+-+
T Consensus 7 aaIm~~hg~t~ 17 (23)
T 3dd7_B 7 ASLFDTLDSTN 17 (26)
T ss_pred HHHHHHHhHHH
Confidence 56789998754
No 4
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=9.35 E-value=1.5e+02 Score=19.67 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=15.8
Q ss_pred HHHHHHHhhc-cccCCCCCCCccHHHHH
Q 032884 66 QVLIMLASRC-FCCGKPLSPGGSRAWAV 92 (131)
Q Consensus 66 qvv~~~~~~C-~Ccg~~~~~~~~r~~av 92 (131)
||+-..+..| .+||+.. |+++-+.++
T Consensus 3 ~vikv~~~ack~~cgk~s-pskKeI~a~ 29 (87)
T 1a6s_A 3 AVIKVISSACKTYCGKTS-PSKKEIGAM 29 (87)
T ss_dssp HHHHHHHHHHHHHHTTTS-SCSSHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC-CcHHHHHHH
Confidence 5565667778 6898765 444444443
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.09 E-value=3.1e+02 Score=17.61 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=20.6
Q ss_pred cceeecCCChhhhhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 032884 41 YNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKP 81 (131)
Q Consensus 41 ~~~C~Yps~~A~~LGv~A~v~Ll~aqvv~~~~~~C~Ccg~~ 81 (131)
..+.-|.+=.--||-+++.+| +.-+++..+.+|-|..++
T Consensus 8 PF~YDY~tLRiGGLifA~vLf--i~GI~iilS~KckCk~~q 46 (72)
T 2jo1_A 8 PFTYDYQSLQIGGLVIAGILF--ILGILIVLSRRCRCKFNQ 46 (72)
T ss_dssp GGGCSTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCT
T ss_pred CcccchHHhhccchHHHHHHH--HHHHHHHHcCccccCCCC
Confidence 345555444444444444433 334555566788887543
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.48 E-value=3.4e+02 Score=17.56 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=17.1
Q ss_pred CcceeecCCChhhhhHHHHHHHHHHHHHHHHHHhhccccCCC
Q 032884 40 NYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKP 81 (131)
Q Consensus 40 ~~~~C~Yps~~A~~LGv~A~v~Ll~aqvv~~~~~~C~Ccg~~ 81 (131)
+..+.-|.+=.--||-+++.+|. .-+++..+.+|-|..+.
T Consensus 10 dpF~YDY~tLRigGLifA~vLfi--~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 10 ERFTYDYYRLRVVGLIVAAVLCV--IGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHH--HHHHHHTTTC-------
T ss_pred CCcccchHHheeccchhHHHHHH--HHHHHHHcCccccCCCC
Confidence 34566665544444444444333 34455566788876543
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=6.12 E-value=3.7e+02 Score=14.92 Aligned_cols=21 Identities=5% Similarity=0.213 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 032884 3 SKLLIATVFVFDLIAFGLAVA 23 (131)
Q Consensus 3 s~~v~~vv~~LgliAfiLgi~ 23 (131)
++++..++..||+.=-++.+-
T Consensus 10 Gvl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHhcchheEEeee
Confidence 345555555566554444333
No 8
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=6.02 E-value=2.3e+02 Score=16.07 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=4.8
Q ss_pred HHHHHHHh
Q 032884 107 WIAFYWTL 114 (131)
Q Consensus 107 ~lLl~gt~ 114 (131)
.+|+|||.
T Consensus 21 vlliwgtv 28 (42)
T 3kl4_B 21 VLLIWGTV 28 (42)
T ss_pred hHHHHHHH
Confidence 45666663
No 9
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=5.81 E-value=2.2e+02 Score=15.12 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHhhccceee
Q 032884 18 FGLAVAAEQRRSTATI 33 (131)
Q Consensus 18 fiLgi~AE~~r~~~~~ 33 (131)
..-.+.||+|+-|++.
T Consensus 7 llasleaenkqlkakv 22 (31)
T 1p9i_A 7 LLASLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446789999988764
No 10
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=5.68 E-value=7.1e+02 Score=19.58 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 032884 90 WAVILFIICWYVRISSDWIAFYWTLLDRFGQILYIY 125 (131)
Q Consensus 90 ~av~~~v~SWi~f~iA~~lLl~gt~~~~~~~~~~~~ 125 (131)
.-+..|+++|.=|.+-..+.... .+..++.+|..
T Consensus 412 ivv~~F~icWlP~~i~~l~~~~~--~~~~~~~~~~~ 445 (500)
T 2rh1_A 412 IIMGTFTLCWLPFFIVNIVHVIQ--DNLIRKEVYIL 445 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--TTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCcccHHHHHH
Confidence 45667899999988765554432 33445555443
Done!