Query 032884
Match_columns 131
No_of_seqs 117 out of 199
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 11:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032884.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032884hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnoa1 a.45.1.1 (A:88-236) Hy 31.6 7.4 0.00054 26.8 1.1 16 108-123 83-98 (149)
2 d2p7tc1 f.14.1.1 (C:86-119) Po 28.3 37 0.0027 17.3 3.6 22 6-27 6-27 (34)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 7.7 1.6E+02 0.012 20.1 3.4 27 96-122 64-90 (447)
4 d2g0ia1 d.64.2.1 (A:1-111) Hyp 7.2 2.6E+02 0.019 17.0 5.4 43 5-48 31-73 (111)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 7.1 1.4E+02 0.01 17.6 2.6 14 7-20 7-20 (158)
6 d1p8ba_ g.3.6.4 (A:) Pab1, sub 6.6 80 0.0059 16.5 0.9 8 41-48 29-36 (37)
7 d1vk6a4 g.41.14.1 (A:97-125) N 6.5 39 0.0029 16.9 -0.4 12 74-85 1-12 (29)
8 d1ju8a_ g.3.6.4 (A:) Leginsuli 6.2 89 0.0065 16.3 0.9 8 41-48 29-36 (37)
9 d2q7ra1 f.56.1.1 (A:1-139) Ara 6.2 1.5E+02 0.011 19.1 2.4 47 4-51 9-59 (139)
10 d1v7pb_ d.169.1.1 (B:) Snake c 6.0 60 0.0044 19.4 0.2 11 41-51 117-127 (127)
No 1
>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=31.55 E-value=7.4 Score=26.83 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHhhhcchhHHH
Q 032884 108 IAFYWTLLDRFGQILY 123 (131)
Q Consensus 108 lLl~gt~~~~~~~~~~ 123 (131)
.-+||||++|+|.+--
T Consensus 83 ~~Lw~tMtdr~P~l~~ 98 (149)
T d2fnoa1 83 AILWTTVADRFPAIKG 98 (149)
T ss_dssp HHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcccchh
Confidence 3479999999998753
No 2
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=28.31 E-value=37 Score=17.34 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 032884 6 LIATVFVFDLIAFGLAVAAEQR 27 (131)
Q Consensus 6 v~~vv~~LgliAfiLgi~AE~~ 27 (131)
+.+++.+-|+.+|.|-++|-++
T Consensus 6 vavvvmvagits~glv~aa~at 27 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHHH
Confidence 5677888999999998887654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=1.6e+02 Score=20.09 Aligned_cols=27 Identities=7% Similarity=-0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHH
Q 032884 96 IICWYVRISSDWIAFYWTLLDRFGQIL 122 (131)
Q Consensus 96 v~SWi~f~iA~~lLl~gt~~~~~~~~~ 122 (131)
+.|......+...++.|.+.||+|.-.
T Consensus 64 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~ 90 (447)
T d1pw4a_ 64 ALSGISIAYGFSKFIMGSVSDRSNPRV 90 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 344555666677889999999999753
No 4
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=7.22 E-value=2.6e+02 Score=16.95 Aligned_cols=43 Identities=9% Similarity=-0.010 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccceeeeccCCCCcceeecCC
Q 032884 5 LLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDS 48 (131)
Q Consensus 5 ~v~~vv~~LgliAfiLgi~AE~~r~~~~~~~~~~~~~~~C~Yps 48 (131)
+||..|..+-..+ +.++.............+.++++..|..|.
T Consensus 31 IVCAaVS~l~~~~-vn~l~~~~~~~~~~~~~e~~~G~l~~~l~~ 73 (111)
T d2g0ia1 31 IVCAAVSTLSMNL-VNALEVLADCTVSLQMDEFDGGYMKIDLSY 73 (111)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHSCCCCEEEEECSTTCEEEEECTT
T ss_pred EEEehHHHHHHHH-HHHHHHHhcccceeEeecccCceEEEEEec
Confidence 5787777766554 566665554433333333334677898874
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.12 E-value=1.4e+02 Score=17.64 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 032884 7 IATVFVFDLIAFGL 20 (131)
Q Consensus 7 ~~vv~~LgliAfiL 20 (131)
.+++.++|++|.+.
T Consensus 7 lVViaIIgILaaia 20 (158)
T d2pila_ 7 MIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666654
No 6
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=6.59 E-value=80 Score=16.49 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=6.5
Q ss_pred cceeecCC
Q 032884 41 YNYCIYDS 48 (131)
Q Consensus 41 ~~~C~Yps 48 (131)
..+|+||+
T Consensus 29 ~G~c~~Ps 36 (37)
T d1p8ba_ 29 IGYCRNPS 36 (37)
T ss_dssp CEEEECTT
T ss_pred EEEEecCC
Confidence 56899997
No 7
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=6.50 E-value=39 Score=16.90 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=7.9
Q ss_pred hccccCCCCCCC
Q 032884 74 RCFCCGKPLSPG 85 (131)
Q Consensus 74 ~C~Ccg~~~~~~ 85 (131)
.|.+||-+..+|
T Consensus 1 fCGYCGh~Mh~s 12 (29)
T d1vk6a4 1 YCGYCGHEMYPS 12 (29)
T ss_dssp BCTTTCCBEEEC
T ss_pred CccccCCccccc
Confidence 478888765444
No 8
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=6.17 E-value=89 Score=16.29 Aligned_cols=8 Identities=25% Similarity=0.771 Sum_probs=6.5
Q ss_pred cceeecCC
Q 032884 41 YNYCIYDS 48 (131)
Q Consensus 41 ~~~C~Yps 48 (131)
..+|+||+
T Consensus 29 vG~C~~Ps 36 (37)
T d1ju8a_ 29 VGFCIHPT 36 (37)
T ss_dssp CEEEECCC
T ss_pred EEEeecCC
Confidence 56899997
No 9
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.16 E-value=1.5e+02 Score=19.12 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHhhccceeeeccC-CCCcceeecCCChh
Q 032884 4 KLLIATVFVFDLIA---FGLAVAAEQRRSTATIQTDS-EKNYNYCIYDSDIS 51 (131)
Q Consensus 4 ~~v~~vv~~LgliA---fiLgi~AE~~r~~~~~~~~~-~~~~~~C~Yps~~A 51 (131)
++...++.++.++- +..-++.+++|.|.+. ++. .++..+|.++.++-
T Consensus 9 ~vl~~~vt~l~~~~~~~ls~~Vg~aR~k~~v~~-p~~~g~~~f~ra~RaH~N 59 (139)
T d2q7ra1 9 VVLLAIVTLISVVQNGFFAHKVEHESRTQNGRS-FQRTGTLAFERVYTANQN 59 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-CCSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHhh
Confidence 34444455554443 4455667777766543 332 23456787765543
No 10
>d1v7pb_ d.169.1.1 (B:) Snake coagglutinin beta chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]}
Probab=6.03 E-value=60 Score=19.42 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.9
Q ss_pred cceeecCCChh
Q 032884 41 YNYCIYDSDIS 51 (131)
Q Consensus 41 ~~~C~Yps~~A 51 (131)
...|+++.|||
T Consensus 117 ~fiCe~~~~Pa 127 (127)
T d1v7pb_ 117 SFVCKFLTDPA 127 (127)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEcCCCC
Confidence 45688888875
Done!