BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032885
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 34/104 (32%)
Query: 41 EGDALYALRRSLSDPDNVLQSWDPTLVNPC--TWFHITCNQDN---RVTRLDL------- 88
+ AL +++ L +P L SW PT + C TW + C+ D RV LDL
Sbjct: 7 DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 89 --------------------GNSNLSGRLVPELGKLEHLQYLYV 112
G +NL G + P + KL L YLY+
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNL 93
PD N+L W NPCT+ +TC +D++VT +DL + L
Sbjct: 22 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPL 59
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLE 105
+T +DL N+NLSG +PE+G+ E
Sbjct: 703 LTEIDLSNNNLSGP-IPEMGQFE 724
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLYVNQNLF 117
L L N++ SG + ELG L +L +N NLF
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By
Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By
Bri1
Length = 768
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 55 PD-NVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNL 93
PD N+L W NPCT+ +TC +D++VT +DL + L
Sbjct: 25 PDKNLLPDWSSN-KNPCTFDGVTC-RDDKVTSIDLSSKPL 62
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 83 VTRLDLGNSNLSGRLVPELGKLE 105
+T +DL N+NLSG +PE+G+ E
Sbjct: 706 LTEIDLSNNNLSGP-IPEMGQFE 727
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 86 LDLGNSNLSGRLVPELGKLEHLQYLYVNQNLF 117
L L N++ SG + ELG L +L +N NLF
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 55 PDNVLQSWDPTLVNPCTWFHITCN 78
PD + WD L C+W H C
Sbjct: 107 PDVPSKGWDAVLPRICSWGHFKCK 130
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 75 ITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLY-------VNQNLF 117
++ N + RVT L L SGR+ +G+L L+ L VN+ LF
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL 116
W + +V DL S+ S +VP L+HL Y +N L
Sbjct: 223 WITDNSPETVQVCTSDLETSDCSNSIVPFTSVLDHLSYFGINTGL 267
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL 116
W + +V DL S+ S +VP L+HL Y +N L
Sbjct: 223 WITDNSPETVQVCTSDLETSDCSNSIVPFTSVLDHLSYFGINTGL 267
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL 116
W + +V DL S+ S +VP L+HL Y +N L
Sbjct: 223 WITDNSPETVQVCTSDLETSDCSNSIVPFTSVLDHLSYFGINTGL 267
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL 116
W + +V DL S+ S +VP L+HL Y +N L
Sbjct: 223 WITDNSPETVQVCTSDLETSDCSNSIVPFTSVLDHLSYFGINTGL 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,191,180
Number of Sequences: 62578
Number of extensions: 109840
Number of successful extensions: 333
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)