Query 032885
Match_columns 131
No_of_seqs 166 out of 1419
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.5 1.9E-14 4.1E-19 120.6 9.1 93 38-131 27-126 (968)
2 PLN03150 hypothetical protein; 99.2 5.7E-11 1.2E-15 96.3 9.1 91 36-131 368-474 (623)
3 PF08263 LRRNT_2: Leucine rich 98.9 2.4E-09 5.1E-14 57.5 4.0 40 39-78 2-43 (43)
4 PLN03150 hypothetical protein; 98.0 4.5E-06 9.7E-11 68.0 3.8 41 82-122 443-483 (623)
5 PF12799 LRR_4: Leucine Rich r 98.0 4.9E-06 1.1E-10 44.7 2.5 37 82-119 2-38 (44)
6 PF13855 LRR_8: Leucine rich r 97.8 3.2E-05 6.9E-10 44.1 3.4 38 82-119 2-39 (61)
7 PLN00113 leucine-rich repeat r 97.5 9.2E-05 2E-09 62.8 4.1 39 83-121 501-539 (968)
8 PF00560 LRR_1: Leucine Rich R 97.0 0.00023 5E-09 32.4 0.7 21 106-127 1-21 (22)
9 PF13855 LRR_8: Leucine rich r 97.0 0.0007 1.5E-08 38.4 2.5 37 81-117 25-61 (61)
10 KOG0617 Ras suppressor protein 95.9 0.0014 3E-08 45.9 -0.9 37 82-119 34-70 (264)
11 KOG0472 Leucine-rich repeat pr 95.8 0.0067 1.5E-07 47.4 2.2 47 80-128 251-297 (565)
12 KOG4237 Extracellular matrix p 95.7 0.0091 2E-07 46.5 2.7 43 82-125 68-111 (498)
13 PRK15387 E3 ubiquitin-protein 95.5 0.0025 5.4E-08 53.5 -0.9 42 83-125 424-465 (788)
14 PRK15370 E3 ubiquitin-protein 94.9 0.024 5.2E-07 47.6 3.2 45 83-130 327-374 (754)
15 PRK15370 E3 ubiquitin-protein 94.6 0.045 9.7E-07 46.0 4.0 45 84-131 244-291 (754)
16 PF14580 LRR_9: Leucine-rich r 94.3 0.051 1.1E-06 37.7 3.2 48 82-130 65-120 (175)
17 cd00116 LRR_RI Leucine-rich re 94.3 0.039 8.5E-07 40.6 2.8 36 83-118 110-150 (319)
18 cd00116 LRR_RI Leucine-rich re 94.3 0.037 8.1E-07 40.7 2.7 12 106-117 194-205 (319)
19 KOG0472 Leucine-rich repeat pr 94.3 0.03 6.5E-07 43.9 2.0 36 82-118 506-541 (565)
20 PF12799 LRR_4: Leucine Rich r 94.2 0.056 1.2E-06 28.7 2.5 27 105-131 1-32 (44)
21 PRK15387 E3 ubiquitin-protein 93.9 0.071 1.5E-06 45.0 3.8 46 82-131 223-270 (788)
22 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.6E-07 23.2 1.2 14 105-118 1-14 (17)
23 KOG0618 Serine/threonine phosp 93.8 0.024 5.1E-07 48.3 0.7 32 100-131 447-484 (1081)
24 PLN03210 Resistant to P. syrin 93.8 0.069 1.5E-06 46.9 3.6 50 82-131 779-833 (1153)
25 PF14580 LRR_9: Leucine-rich r 93.7 0.053 1.2E-06 37.6 2.3 48 82-131 43-96 (175)
26 KOG4194 Membrane glycoprotein 93.4 0.049 1.1E-06 44.7 1.9 52 80-131 124-181 (873)
27 KOG0444 Cytoskeletal regulator 92.9 0.025 5.4E-07 46.9 -0.4 49 82-131 223-276 (1255)
28 KOG0617 Ras suppressor protein 91.9 0.035 7.6E-07 39.0 -0.6 22 97-118 94-115 (264)
29 KOG0444 Cytoskeletal regulator 91.5 0.057 1.2E-06 44.9 0.0 35 84-118 81-116 (1255)
30 KOG4658 Apoptotic ATPase [Sign 91.3 0.11 2.4E-06 44.6 1.6 43 82-125 572-614 (889)
31 PF13516 LRR_6: Leucine Rich r 91.1 0.088 1.9E-06 23.9 0.5 16 104-119 1-16 (24)
32 smart00369 LRR_TYP Leucine-ric 90.9 0.17 3.6E-06 23.4 1.4 17 104-120 1-17 (26)
33 smart00370 LRR Leucine-rich re 90.9 0.17 3.6E-06 23.4 1.4 17 104-120 1-17 (26)
34 KOG4194 Membrane glycoprotein 90.2 0.14 2.9E-06 42.2 1.1 49 83-131 271-325 (873)
35 PLN03210 Resistant to P. syrin 89.5 0.49 1.1E-05 41.7 4.0 34 83-116 659-692 (1153)
36 KOG4579 Leucine-rich repeat (L 88.8 0.073 1.6E-06 36.0 -1.1 36 83-119 79-114 (177)
37 KOG1259 Nischarin, modulator o 88.0 0.21 4.5E-06 38.1 0.7 36 82-119 308-343 (490)
38 KOG4579 Leucine-rich repeat (L 86.4 0.26 5.7E-06 33.4 0.4 49 81-130 53-107 (177)
39 smart00368 LRR_RI Leucine rich 84.8 0.63 1.4E-05 22.0 1.2 14 105-118 2-15 (28)
40 smart00365 LRR_SD22 Leucine-ri 84.8 0.69 1.5E-05 21.7 1.3 16 104-119 1-16 (26)
41 KOG1259 Nischarin, modulator o 84.0 0.75 1.6E-05 35.2 1.9 48 83-131 286-337 (490)
42 COG4886 Leucine-rich repeat (L 83.5 0.51 1.1E-05 36.1 0.9 35 83-118 118-153 (394)
43 KOG0532 Leucine-rich repeat (L 82.6 1 2.2E-05 37.1 2.3 37 82-119 212-248 (722)
44 KOG4237 Extracellular matrix p 82.4 0.69 1.5E-05 36.4 1.2 14 82-95 275-288 (498)
45 KOG3665 ZYG-1-like serine/thre 77.8 1.7 3.7E-05 36.5 2.2 18 77-94 169-186 (699)
46 smart00364 LRR_BAC Leucine-ric 77.8 1.3 2.7E-05 20.9 0.8 15 105-119 2-16 (26)
47 KOG2739 Leucine-rich acidic nu 77.6 1.3 2.8E-05 32.6 1.3 37 82-118 66-104 (260)
48 KOG2982 Uncharacterized conser 76.5 0.91 2E-05 34.6 0.2 38 82-119 72-111 (418)
49 PRK15386 type III secretion pr 74.8 3.7 8E-05 32.5 3.2 25 106-130 157-184 (426)
50 COG4886 Leucine-rich repeat (L 74.4 3 6.4E-05 31.9 2.6 49 82-131 141-194 (394)
51 KOG0618 Serine/threonine phosp 73.9 0.98 2.1E-05 39.0 -0.1 37 82-119 384-421 (1081)
52 KOG0531 Protein phosphatase 1, 73.3 2.3 4.9E-05 33.2 1.7 37 82-119 96-132 (414)
53 KOG0531 Protein phosphatase 1, 72.6 2 4.4E-05 33.4 1.3 48 82-131 119-170 (414)
54 KOG1644 U2-associated snRNP A' 70.3 3.8 8.3E-05 29.5 2.1 36 82-118 65-101 (233)
55 KOG3207 Beta-tubulin folding c 68.2 1.7 3.6E-05 34.6 0.0 38 82-119 147-186 (505)
56 PF05725 FNIP: FNIP Repeat; I 68.1 6.1 0.00013 20.6 2.2 31 95-131 8-42 (44)
57 KOG2739 Leucine-rich acidic nu 68.1 3 6.6E-05 30.7 1.3 32 100-131 60-99 (260)
58 KOG4658 Apoptotic ATPase [Sign 66.6 2.8 6E-05 36.3 1.0 48 82-130 596-649 (889)
59 KOG3207 Beta-tubulin folding c 66.5 2.6 5.6E-05 33.6 0.7 38 82-119 247-285 (505)
60 KOG1859 Leucine-rich repeat pr 65.8 1.8 3.8E-05 36.9 -0.3 33 83-117 189-221 (1096)
61 KOG3665 ZYG-1-like serine/thre 60.8 5.1 0.00011 33.8 1.5 36 83-118 150-186 (699)
62 PRK15386 type III secretion pr 58.1 11 0.00025 29.8 2.9 9 82-90 73-81 (426)
63 KOG2120 SCF ubiquitin ligase, 53.7 9 0.00019 29.5 1.7 36 82-117 314-350 (419)
64 KOG1909 Ran GTPase-activating 47.2 11 0.00024 29.3 1.2 38 81-118 92-133 (382)
65 KOG3864 Uncharacterized conser 44.4 15 0.00032 26.4 1.5 32 83-114 103-134 (221)
66 KOG1644 U2-associated snRNP A' 42.7 30 0.00065 25.0 2.8 47 83-130 90-147 (233)
67 KOG0532 Leucine-rich repeat (L 41.7 6.5 0.00014 32.6 -0.7 24 96-119 112-135 (722)
68 KOG1859 Leucine-rich repeat pr 40.9 7 0.00015 33.6 -0.6 48 82-131 210-262 (1096)
69 smart00367 LRR_CC Leucine-rich 39.0 19 0.00042 16.2 1.0 13 104-116 1-13 (26)
70 KOG1909 Ran GTPase-activating 38.9 16 0.00034 28.5 1.0 19 100-118 208-226 (382)
71 COG5238 RNA1 Ran GTPase-activa 38.1 34 0.00073 26.1 2.6 36 82-117 93-132 (388)
72 KOG2982 Uncharacterized conser 36.1 17 0.00036 28.1 0.7 48 72-119 86-135 (418)
73 COG5238 RNA1 Ran GTPase-activa 34.9 15 0.00033 27.9 0.4 27 99-125 86-112 (388)
74 TIGR00864 PCC polycystin catio 28.8 41 0.00089 33.0 2.1 32 87-118 1-32 (2740)
75 PF08116 Toxin_29: PhTx neurot 27.9 34 0.00073 16.4 0.8 12 69-80 2-13 (31)
76 KOG2120 SCF ubiquitin ligase, 27.7 15 0.00033 28.2 -0.6 16 102-117 257-272 (419)
77 PRK11901 hypothetical protein; 20.3 1.7E+02 0.0038 22.5 3.7 23 6-28 32-54 (327)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.55 E-value=1.9e-14 Score=120.64 Aligned_cols=93 Identities=27% Similarity=0.512 Sum_probs=78.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccceeeeCCCCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcc
Q 032885 38 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLF 117 (131)
Q Consensus 38 ~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l 117 (131)
.+.|..+|..||+.+.+|.+.+.+|+.. .++|.|.|++|+..++|+.|++++++++|.+|+.+..+++|+.|+|++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 4578899999999998776677889765 689999999998778999999999999999998899999999999999998
Q ss_pred cCCCC-------CCCceeecC
Q 032885 118 LFISF-------HNMYILNIN 131 (131)
Q Consensus 118 ~G~~~-------~~l~~L~ls 131 (131)
+|.+| ++|+.||||
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls 126 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLS 126 (968)
T ss_pred CCcCChHHhccCCCCCEEECc
Confidence 88655 455666664
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=5.7e-11 Score=96.26 Aligned_cols=91 Identities=26% Similarity=0.402 Sum_probs=65.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-----ccceeeeCC---C--CCEEEEecCCCCcceeCchhhcCCc
Q 032885 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPC-----TWFHITCNQ---D--NRVTRLDLGNSNLSGRLVPELGKLE 105 (131)
Q Consensus 36 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~~C-----~w~gv~C~~---~--~~v~~l~l~~~~l~G~ip~~l~~L~ 105 (131)
.+.+.|..+|+.+|..+.++.. .+|.. +|| .|.|+.|.. . ..|+.|+|+++++.|.+|+.+++++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 3456788999999998865431 37863 566 699999952 1 2478888888888888887777777
Q ss_pred ccceeeccCCcccCCCC------CCCceeecC
Q 032885 106 HLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 106 ~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
+|+.|+|++|+++|.+| ++|+.||||
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence 77777777777777665 344555554
No 3
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.90 E-value=2.4e-09 Score=57.49 Aligned_cols=40 Identities=45% Similarity=1.061 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCcccceeeeC
Q 032885 39 NSEGDALYALRRSLS-DPDNVLQSWDPTL-VNPCTWFHITCN 78 (131)
Q Consensus 39 ~~~~~~L~~~~~~l~-~~~~~l~~W~~~~-~~~C~w~gv~C~ 78 (131)
+.|.++|++||+.+. ++...+.+|+... .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999998 5667889999863 689999999995
No 4
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=4.5e-06 Score=68.05 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=21.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF 122 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~ 122 (131)
+++.|++++|++.|.+|+.++++++|+.|+|++|+++|.+|
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 34455555555555555555555555555555555555443
No 5
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=4.9e-06 Score=44.72 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=31.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|+++ .||+++++|++|++|++++|.++-
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4678999999999 689899999999999999999874
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.78 E-value=3.2e-05 Score=44.06 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=24.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.+++++|+++.--+..+.++++|++|++++|.++.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc
Confidence 35666777776663333456667777777777777765
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.53 E-value=9.2e-05 Score=62.79 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS 121 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~ 121 (131)
++.+++++|.+.|.+|..+.++++|++|+|++|.++|.+
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 334455555555555555555555555555555555543
No 8
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.05 E-value=0.00023 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=15.2
Q ss_pred ccceeeccCCcccCCCCCCCce
Q 032885 106 HLQYLYVNQNLFLFISFHNMYI 127 (131)
Q Consensus 106 ~L~~L~L~~N~l~G~~~~~l~~ 127 (131)
+|++|+|++|+++ .+|+++..
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677888888887 67776654
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.98 E-value=0.0007 Score=38.37 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.6
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcc
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLF 117 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l 117 (131)
.+++.|++++|.+..--|..+.++++|++|++++|++
T Consensus 25 ~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 25 PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999866566789999999999999975
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.87 E-value=0.0014 Score=45.86 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.|+.+.++.|.++ .+||.+..|.+|+.|++.+|++.-
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~ 70 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE 70 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh
Confidence 4555555555554 344555555555555555555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.75 E-value=0.0067 Score=47.40 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=39.8
Q ss_pred CCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCCCCcee
Q 032885 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFHNMYIL 128 (131)
Q Consensus 80 ~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~~l~~L 128 (131)
-.++..+|+..|.+. ++|.+++.|.+|.+||+|+|.++|- |.+++.|
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl 297 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLGNL 297 (565)
T ss_pred cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccccccc
Confidence 357888999999997 7899999999999999999999984 5555554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.70 E-value=0.0091 Score=46.47 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=35.6
Q ss_pred CEEEEecCCCCcceeCch-hhcCCcccceeeccCCcccCCCCCCC
Q 032885 82 RVTRLDLGNSNLSGRLVP-ELGKLEHLQYLYVNQNLFLFISFHNM 125 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~-~l~~L~~L~~L~L~~N~l~G~~~~~l 125 (131)
..++|+|..|+++ .||+ .+..+++|+.|||++|+++-+-|..+
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF 111 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAF 111 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhh
Confidence 5788999999997 4555 68999999999999999988666544
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.52 E-value=0.0025 Score=53.46 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=32.0
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCCCC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFHNM 125 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~~l 125 (131)
+..+++++|+++ .||..++++++|+.|+|++|.|+|..|..|
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 344555555555 688889999999999999999999765544
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.94 E-value=0.024 Score=47.58 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=22.0
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCccc---CCCCCCCceeec
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL---FISFHNMYILNI 130 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~---G~~~~~l~~L~l 130 (131)
+..|++++|.+++ +|..+. ++|+.|++++|+|+ +.+|++|+.|+|
T Consensus 327 L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdL 374 (754)
T PRK15370 327 LKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETLPPTITTLDV 374 (754)
T ss_pred ceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhhcCCcCEEEC
Confidence 4444455554443 444332 45555566655555 234445555554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=94.61 E-value=0.045 Score=46.02 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=22.7
Q ss_pred EEEecCCCCcceeCchhhcCCcccceeeccCCcccC---CCCCCCceeecC
Q 032885 84 TRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF---ISFHNMYILNIN 131 (131)
Q Consensus 84 ~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G---~~~~~l~~L~ls 131 (131)
..+++++|++. .||..+. .+|++|++++|+++. .+|++|+.|+||
T Consensus 244 ~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 244 QEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVY 291 (754)
T ss_pred cEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCCCCcEEECC
Confidence 33444444443 3444332 356666666666664 234456666654
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.34 E-value=0.051 Score=37.69 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=18.0
Q ss_pred CEEEEecCCCCcceeCchhh-cCCcccceeeccCCcccC-------CCCCCCceeec
Q 032885 82 RVTRLDLGNSNLSGRLVPEL-GKLEHLQYLYVNQNLFLF-------ISFHNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l-~~L~~L~~L~L~~N~l~G-------~~~~~l~~L~l 130 (131)
++..+++++|.++. +++.+ ..+++|+.|++++|.+.. .-.++|+.|+|
T Consensus 65 ~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 65 RLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp T--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred hhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 56777777777763 44444 357788888888887765 12556666665
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.33 E-value=0.039 Score=40.61 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=16.6
Q ss_pred EEEEecCCCCcce----eCchhhcCC-cccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSG----RLVPELGKL-EHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G----~ip~~l~~L-~~L~~L~L~~N~l~ 118 (131)
++.++++++++.+ .+...+..+ ++|+.|++++|.++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 4455555554442 222233344 45555555555555
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.32 E-value=0.037 Score=40.73 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=4.8
Q ss_pred ccceeeccCCcc
Q 032885 106 HLQYLYVNQNLF 117 (131)
Q Consensus 106 ~L~~L~L~~N~l 117 (131)
+|+.|++++|.+
T Consensus 194 ~L~~L~L~~n~i 205 (319)
T cd00116 194 NLEVLDLNNNGL 205 (319)
T ss_pred CCCEEeccCCcc
Confidence 344444444433
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.26 E-value=0.03 Score=43.91 Aligned_cols=36 Identities=36% Similarity=0.591 Sum_probs=32.0
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
+++.+|+.+|.+. +||+.++++++|+.|.+.+|.|.
T Consensus 506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 5778888888886 78999999999999999999987
No 20
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.21 E-value=0.056 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=18.9
Q ss_pred cccceeeccCCcccCCC-----CCCCceeecC
Q 032885 105 EHLQYLYVNQNLFLFIS-----FHNMYILNIN 131 (131)
Q Consensus 105 ~~L~~L~L~~N~l~G~~-----~~~l~~L~ls 131 (131)
++|++|++++|+++... .++|+.||++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLS 32 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEET
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEec
Confidence 47999999999998622 3567888775
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.92 E-value=0.071 Score=45.02 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=30.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC--CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI--SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~--~~~~l~~L~ls 131 (131)
.++.|++.+|+++. +|. .+++|++|++++|+|+.. .|++|+.|+|+
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls 270 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIF 270 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccCcccccceeecc
Confidence 46677777777763 554 246788888888888762 35666666653
No 22
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.82 E-value=0.04 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=9.4
Q ss_pred cccceeeccCCccc
Q 032885 105 EHLQYLYVNQNLFL 118 (131)
Q Consensus 105 ~~L~~L~L~~N~l~ 118 (131)
++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 47899999999875
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.77 E-value=0.024 Score=48.30 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=27.5
Q ss_pred hhcCCcccceeeccCCcccC-----CCC-CCCceeecC
Q 032885 100 ELGKLEHLQYLYVNQNLFLF-----ISF-HNMYILNIN 131 (131)
Q Consensus 100 ~l~~L~~L~~L~L~~N~l~G-----~~~-~~l~~L~ls 131 (131)
++..++.|+.+|++.|+|+- ..| ++|+.||||
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 78889999999999999986 347 899999986
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.77 E-value=0.069 Score=46.86 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=37.0
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC-----CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS-----FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~-----~~~l~~L~ls 131 (131)
.++.|++++|...+.+|..++++++|+.|++++|..-+.+ +++|+.|+||
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls 833 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLS 833 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECC
Confidence 4677888888888889999999999999999887543333 3445555553
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=93.73 E-value=0.053 Score=37.58 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=15.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC------CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI------SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~------~~~~l~~L~ls 131 (131)
++..+++++|+++. ++ .+..+++|++|++++|.++.. ..++|+.|+|+
T Consensus 43 ~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 43 KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp T--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 46677777777663 32 366677777777777777642 13566666653
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=93.43 E-value=0.049 Score=44.66 Aligned_cols=52 Identities=27% Similarity=0.275 Sum_probs=42.6
Q ss_pred CCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC----CCCC--CCceeecC
Q 032885 80 DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF----ISFH--NMYILNIN 131 (131)
Q Consensus 80 ~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G----~~~~--~l~~L~ls 131 (131)
.|+++.++|.+|.++-.-.+++..++.|+.||||.|.++- +.|+ ++++|||+
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 4689999999998876667789999999999999999987 3444 67888875
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=92.91 E-value=0.025 Score=46.85 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=37.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC-----CCCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF-----ISFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G-----~~~~~l~~L~ls 131 (131)
.+..+|++.|+|. .+|+.+.++.+|+.|+||+|.++- ..-.+++.||||
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccc
Confidence 4667888888886 678899999999999999998876 123445555554
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=91.90 E-value=0.035 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=10.8
Q ss_pred CchhhcCCcccceeeccCCccc
Q 032885 97 LVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 97 ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
+|..+|.++.|+.|||..|+++
T Consensus 94 lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred CccccCCCchhhhhhccccccc
Confidence 3444555555555555555444
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.47 E-value=0.057 Score=44.87 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=16.0
Q ss_pred EEEecCCCCcc-eeCchhhcCCcccceeeccCCccc
Q 032885 84 TRLDLGNSNLS-GRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 84 ~~l~l~~~~l~-G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
.++++..|+|. .-||++|..|..|+.|+||.|+|.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence 33444444442 224445555555555555555444
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.33 E-value=0.11 Score=44.56 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=33.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCCCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFHNM 125 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~~l 125 (131)
.+..+|+++|.=-+.+|.++++|.+|++|+++...+. .+|..+
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH
Confidence 4566788887666889999999999999999998877 444444
No 31
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.14 E-value=0.088 Score=23.92 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=11.2
Q ss_pred CcccceeeccCCcccC
Q 032885 104 LEHLQYLYVNQNLFLF 119 (131)
Q Consensus 104 L~~L~~L~L~~N~l~G 119 (131)
+++|++|+|++|.+++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4688999999999875
No 32
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.88 E-value=0.17 Score=23.38 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.4
Q ss_pred CcccceeeccCCcccCC
Q 032885 104 LEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 104 L~~L~~L~L~~N~l~G~ 120 (131)
|++|++|+|++|.++-.
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 57899999999988764
No 33
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.88 E-value=0.17 Score=23.38 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.4
Q ss_pred CcccceeeccCCcccCC
Q 032885 104 LEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 104 L~~L~~L~L~~N~l~G~ 120 (131)
|++|++|+|++|.++-.
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 57899999999988764
No 34
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=90.18 E-value=0.14 Score=42.22 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=26.3
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC------CCCCCCceeecC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF------ISFHNMYILNIN 131 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G------~~~~~l~~L~ls 131 (131)
+..|+|+.|+++..-...+.+|+.|+.|+||+|.+.- +.-++|+.||||
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 4556666666554434445566666666666665554 223445555554
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=89.49 E-value=0.49 Score=41.71 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=18.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL 116 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~ 116 (131)
+..|+++++..-..+|..++++++|+.|++++|.
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 3444444444445556666666666666666543
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.81 E-value=0.073 Score=36.02 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.8
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.++ .+|.++..++.|+.|+++.|.|.-
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence 455666666665 678888899999999999998876
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=88.04 E-value=0.21 Score=38.09 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=21.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.|..++++.|++.- -..+..|.+|+.||||+|.++-
T Consensus 308 kir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 308 KLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred ceeEEeccccceee--ehhhhhcccceEeecccchhHh
Confidence 34555555555531 1236667777777777776654
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.41 E-value=0.26 Score=33.40 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCEEEEecCCCCcceeCchhhc-CCcccceeeccCCcccCC-----CCCCCceeec
Q 032885 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLYVNQNLFLFI-----SFHNMYILNI 130 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~-~L~~L~~L~L~~N~l~G~-----~~~~l~~L~l 130 (131)
-+++.+++++|++. .+|+.+. +.+.+++|++++|.++-. -.+.|+.||+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 46899999999987 4566554 566999999999999873 2344566655
No 39
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.83 E-value=0.63 Score=22.03 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=11.9
Q ss_pred cccceeeccCCccc
Q 032885 105 EHLQYLYVNQNLFL 118 (131)
Q Consensus 105 ~~L~~L~L~~N~l~ 118 (131)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57899999999885
No 40
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.80 E-value=0.69 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=13.2
Q ss_pred CcccceeeccCCcccC
Q 032885 104 LEHLQYLYVNQNLFLF 119 (131)
Q Consensus 104 L~~L~~L~L~~N~l~G 119 (131)
+.+|+.|+++.|.++-
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 4689999999998753
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=83.98 E-value=0.75 Score=35.17 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC----CCCCCCceeecC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF----ISFHNMYILNIN 131 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G----~~~~~l~~L~ls 131 (131)
++.+|+++|.++ .|.++.--++.++.|++|.|.+.- ...++|..||||
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS 337 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc
Confidence 456788887765 455566677888899999988764 235677888876
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=83.47 E-value=0.51 Score=36.15 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=17.7
Q ss_pred EEEEecCCCCcceeCchhhcCCc-ccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLE-HLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~-~L~~L~L~~N~l~ 118 (131)
++.+++.++++. .||+....+. +|+.|++++|.+.
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~ 153 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE 153 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh
Confidence 455555555443 3444444443 5555555555544
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.64 E-value=1 Score=37.08 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=33.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++++|++.|+++ .||-++.++++|++|-|.+|-|.-
T Consensus 212 pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 4678899999986 789999999999999999999986
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.43 E-value=0.69 Score=36.39 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=7.6
Q ss_pred CEEEEecCCCCcce
Q 032885 82 RVTRLDLGNSNLSG 95 (131)
Q Consensus 82 ~v~~l~l~~~~l~G 95 (131)
++..|++++|.+++
T Consensus 275 ~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 275 NLRKLNLSNNKITR 288 (498)
T ss_pred cceEeccCCCccch
Confidence 34555566555554
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=77.78 E-value=1.7 Score=36.52 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=11.5
Q ss_pred eCCCCCEEEEecCCCCcc
Q 032885 77 CNQDNRVTRLDLGNSNLS 94 (131)
Q Consensus 77 C~~~~~v~~l~l~~~~l~ 94 (131)
|.+=..+..||+++.+++
T Consensus 169 c~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNIS 186 (699)
T ss_pred hhccCccceeecCCCCcc
Confidence 433345777888877765
No 46
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.75 E-value=1.3 Score=20.90 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.6
Q ss_pred cccceeeccCCcccC
Q 032885 105 EHLQYLYVNQNLFLF 119 (131)
Q Consensus 105 ~~L~~L~L~~N~l~G 119 (131)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 368899999999875
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.57 E-value=1.3 Score=32.64 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=23.1
Q ss_pred CEEEEecCCC--CcceeCchhhcCCcccceeeccCCccc
Q 032885 82 RVTRLDLGNS--NLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~--~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
.+..+.++.| ..++.++.-.-++++|+.|+++.|++.
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4556666666 445555555555577777777777665
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.53 E-value=0.91 Score=34.64 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=18.5
Q ss_pred CEEEEecCCCCcc--eeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLS--GRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~--G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+|..+|+.+|.++ -.|-.-+-++++|++|+|+.|.|+-
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC
Confidence 3445555555554 1222224455555555555555553
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=74.76 E-value=3.7 Score=32.49 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=16.2
Q ss_pred ccceeeccCCccc---CCCCCCCceeec
Q 032885 106 HLQYLYVNQNLFL---FISFHNMYILNI 130 (131)
Q Consensus 106 ~L~~L~L~~N~l~---G~~~~~l~~L~l 130 (131)
+|++|+++++... +.+|.+++.|++
T Consensus 157 SLk~L~Is~c~~i~LP~~LP~SLk~L~l 184 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEKLPESLQSITL 184 (426)
T ss_pred cccEEEecCCCcccCcccccccCcEEEe
Confidence 5677777766543 356777777664
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=74.45 E-value=3 Score=31.94 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=36.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC-----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI-----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~-----~~~~l~~L~ls 131 (131)
.++.+++++|.+. .+|..+..++.|+.|++++|.++-. .++++..|++|
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 5777778777775 4556789999999999999988752 45666766654
No 51
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=73.92 E-value=0.98 Score=39.00 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=23.5
Q ss_pred CEEEEecCCCCcceeCch-hhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVP-ELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~-~l~~L~~L~~L~L~~N~l~G 119 (131)
++.-|+|+.|.|. ++|. .+.++..|+.|+||+|.|+-
T Consensus 384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh
Confidence 4566666666663 4454 46667777777777776665
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=73.26 E-value=2.3 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=18.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.+..+++.+|.+.+.-. .+..+.+|+.|++++|.++.
T Consensus 96 ~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred ceeeeeccccchhhccc-chhhhhcchheecccccccc
Confidence 34555555555543221 14555566666666665554
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=72.60 E-value=2 Score=33.42 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=33.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
+++.+++++|.++...+ +..++.|+.|++++|.++.. .++.++.|+++
T Consensus 119 ~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 56778888888875443 66677788899999887762 25556666553
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=70.32 E-value=3.8 Score=29.48 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=16.4
Q ss_pred CEEEEecCCCCcceeCchhhcC-CcccceeeccCCccc
Q 032885 82 RVTRLDLGNSNLSGRLVPELGK-LEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~-L~~L~~L~L~~N~l~ 118 (131)
++..|.+++|+++- |-+.+.. +++|++|.|.+|++.
T Consensus 65 rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 65 RLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceEEecCCccee-eccchhhhccccceEEecCcchh
Confidence 34445555555442 2222322 344555555555544
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=1.7 Score=34.63 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=24.2
Q ss_pred CEEEEecCCCCcce--eCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSG--RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G--~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.|+.+||+.|=+.- ++-.-...|++|+.|+|+.|.|.-
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 46777777776652 222234567788888888887653
No 56
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=68.10 E-value=6.1 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=19.4
Q ss_pred eeCchhhcCCcccceeeccCC---cc-cCCCCCCCceeecC
Q 032885 95 GRLVPELGKLEHLQYLYVNQN---LF-LFISFHNMYILNIN 131 (131)
Q Consensus 95 G~ip~~l~~L~~L~~L~L~~N---~l-~G~~~~~l~~L~ls 131 (131)
|.|| .+++.|.++++ .+ .|.+|++++.|.++
T Consensus 8 ~~iP------~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 8 GSIP------SSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CeeC------CCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 5666 35666666332 23 36788888888763
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=68.06 E-value=3 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=24.4
Q ss_pred hhcCCcccceeeccCCcccC--C------CCCCCceeecC
Q 032885 100 ELGKLEHLQYLYVNQNLFLF--I------SFHNMYILNIN 131 (131)
Q Consensus 100 ~l~~L~~L~~L~L~~N~l~G--~------~~~~l~~L~ls 131 (131)
.+-.|++|+.|.++.|++.. . ..++|++|+||
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence 46678899999999995554 2 24788888876
No 58
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=66.57 E-value=2.8 Score=36.29 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=35.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeec
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~l 130 (131)
++.-+++++.++. .+|..+.+|..|.+|++..+.--.++ ..+|++|.+
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 3445677777777 88999999999999999988653333 566666654
No 59
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=66.48 E-value=2.6 Score=33.59 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=21.6
Q ss_pred CEEEEecCCCCcce-eCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSG-RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G-~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.+.+||+++|++-- .--+-++.++.|+.|+++++.++-
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcch
Confidence 45677888777531 111235666666666666665543
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=65.83 E-value=1.8 Score=36.94 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=14.0
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLF 117 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l 117 (131)
+..++|+.|+++-. ..+-.|++|+.|||+.|.|
T Consensus 189 le~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 189 LESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred hhhhccchhhhhhh--HHHHhcccccccccccchh
Confidence 33445555544321 1344444444444444443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=60.82 E-value=5.1 Score=33.76 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=18.5
Q ss_pred EEEEecCCCCcce-eCchhhcCCcccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSG-RLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G-~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
++++.+.+..+.. ..-.-..++++|..||+|+-+++
T Consensus 150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred cceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 4555555555432 12222345666666666665544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=58.08 E-value=11 Score=29.83 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=5.0
Q ss_pred CEEEEecCC
Q 032885 82 RVTRLDLGN 90 (131)
Q Consensus 82 ~v~~l~l~~ 90 (131)
.++.|.+.+
T Consensus 73 sLtsL~Lsn 81 (426)
T PRK15386 73 ELTEITIEN 81 (426)
T ss_pred CCcEEEccC
Confidence 356666654
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=53.74 E-value=9 Score=29.45 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=25.1
Q ss_pred CEEEEecCCCC-cceeCchhhcCCcccceeeccCCcc
Q 032885 82 RVTRLDLGNSN-LSGRLVPELGKLEHLQYLYVNQNLF 117 (131)
Q Consensus 82 ~v~~l~l~~~~-l~G~ip~~l~~L~~L~~L~L~~N~l 117 (131)
.++.+||+.+. ++..+-.++.+++.|++|+++..+.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 46777887664 5544445678888888888887753
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=47.19 E-value=11 Score=29.28 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCEEEEecCCCCcceeCch----hhcCCcccceeeccCCccc
Q 032885 81 NRVTRLDLGNSNLSGRLVP----ELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~----~l~~L~~L~~L~L~~N~l~ 118 (131)
++++.+|||.|.+.-.-++ -|..+..|+.|.|.||.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 3788999999988644333 3667889999999998775
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.39 E-value=15 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=13.8
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQ 114 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~ 114 (131)
|..+|-++..+.+.==+.+.+++.++.|.+.+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ 134 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLAN 134 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecc
Confidence 45555554444332223344444444444443
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=42.70 E-value=30 Score=25.02 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=28.1
Q ss_pred EEEEecCCCCcc--eeCchhhcCCcccceeeccCCcccC---------CCCCCCceeec
Q 032885 83 VTRLDLGNSNLS--GRLVPELGKLEHLQYLYVNQNLFLF---------ISFHNMYILNI 130 (131)
Q Consensus 83 v~~l~l~~~~l~--G~ip~~l~~L~~L~~L~L~~N~l~G---------~~~~~l~~L~l 130 (131)
+..|.+.+|.+. |.+-+ +..++.|++|.+-+|..+- --.|+++.||.
T Consensus 90 l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 90 LKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred cceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 344556666654 44432 6677777777777777664 12455666664
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=41.66 E-value=6.5 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=17.5
Q ss_pred eCchhhcCCcccceeeccCCcccC
Q 032885 96 RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 96 ~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.||+.+++|..|++|+|+.|+++-
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~ 135 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSH 135 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhc
Confidence 567777777777777777777764
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=40.90 E-value=7 Score=33.55 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=28.0
Q ss_pred CEEEEecCCCCcceeCch-hhcCCcccceeeccCCcccC----CCCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVP-ELGKLEHLQYLYVNQNLFLF----ISFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~-~l~~L~~L~~L~L~~N~l~G----~~~~~l~~L~ls 131 (131)
++..+|++.|.|+- +|. ....+. |+.|++++|.++- .-.++|+.||||
T Consensus 210 ~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 210 KLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred cccccccccchhcc-ccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchh
Confidence 45667777777652 221 122233 7777777777664 346667777764
No 69
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.00 E-value=19 Score=16.20 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=9.8
Q ss_pred CcccceeeccCCc
Q 032885 104 LEHLQYLYVNQNL 116 (131)
Q Consensus 104 L~~L~~L~L~~N~ 116 (131)
+++|+.|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888873
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=38.87 E-value=16 Score=28.45 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=12.8
Q ss_pred hhcCCcccceeeccCCccc
Q 032885 100 ELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 100 ~l~~L~~L~~L~L~~N~l~ 118 (131)
.+..+++|+.|||.+|-|+
T Consensus 208 al~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHHhCCcceeeecccchhh
Confidence 4566677777777777665
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=38.07 E-value=34 Score=26.12 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=21.6
Q ss_pred CEEEEecCCCCcceeCchh----hcCCcccceeeccCCcc
Q 032885 82 RVTRLDLGNSNLSGRLVPE----LGKLEHLQYLYVNQNLF 117 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~----l~~L~~L~~L~L~~N~l 117 (131)
++..++++.|.+.-+.|+. |+.-+.|+.|.+++|.+
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4566666666666555553 34455666666666654
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.11 E-value=17 Score=28.06 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=27.1
Q ss_pred cceeee--CCCCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 72 WFHITC--NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 72 w~gv~C--~~~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
|+-|.| ..-.+++.++++.|.|+-.|...-..+.+|+.|.|.+..|.-
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 554443 334577888888888764442211344566666666655543
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=34.92 E-value=15 Score=27.87 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=21.8
Q ss_pred hhhcCCcccceeeccCCcccCCCCCCC
Q 032885 99 PELGKLEHLQYLYVNQNLFLFISFHNM 125 (131)
Q Consensus 99 ~~l~~L~~L~~L~L~~N~l~G~~~~~l 125 (131)
+.+.+|++|+..+||.|.|.-..|+.|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L 112 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEEL 112 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHH
Confidence 357889999999999999987655443
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.78 E-value=41 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=18.2
Q ss_pred ecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 87 DLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 87 ~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
||++|+|+--=+..+..|.+|++|+|++|-|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45566665222224556667777777776554
No 75
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=27.90 E-value=34 Score=16.41 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=7.6
Q ss_pred CcccceeeeCCC
Q 032885 69 PCTWFHITCNQD 80 (131)
Q Consensus 69 ~C~w~gv~C~~~ 80 (131)
+|.+.|-.|.++
T Consensus 2 fC~~nGqQCtSD 13 (31)
T PF08116_consen 2 FCRYNGQQCTSD 13 (31)
T ss_pred ccccCccccCcC
Confidence 566777776543
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=27.74 E-value=15 Score=28.24 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=6.8
Q ss_pred cCCcccceeeccCCcc
Q 032885 102 GKLEHLQYLYVNQNLF 117 (131)
Q Consensus 102 ~~L~~L~~L~L~~N~l 117 (131)
.+|+.|+.|+|+-..+
T Consensus 257 ~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFL 272 (419)
T ss_pred HhhhhHhhcCchHhhc
Confidence 3444444444444433
No 77
>PRK11901 hypothetical protein; Reviewed
Probab=20.29 E-value=1.7e+02 Score=22.48 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 032885 6 AAAAQWLSVCITFSVSLIIIIIG 28 (131)
Q Consensus 6 ~~~~~~m~~~~~~~~~~~~~~~~ 28 (131)
+..+++|++..-.++++++++..
T Consensus 32 ~vSRQh~MiGiGilVLlLLIi~I 54 (327)
T PRK11901 32 AVSRQHMMIGIGILVLLLLIIAI 54 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888766666655555543
Done!