Query 032885
Match_columns 131
No_of_seqs 166 out of 1419
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.6 1E-15 3.5E-20 112.6 8.8 93 36-130 2-108 (313)
2 3rgz_A Protein brassinosteroid 99.6 3.1E-16 1.1E-20 127.4 6.4 94 35-131 7-134 (768)
3 4eco_A Uncharacterized protein 99.5 6E-14 2E-18 112.1 6.5 78 39-117 29-117 (636)
4 4ecn_A Leucine-rich repeat pro 99.4 1.1E-13 3.8E-18 114.3 6.2 81 38-123 267-366 (876)
5 4fcg_A Uncharacterized protein 99.0 4.4E-11 1.5E-15 88.5 0.5 97 32-130 19-134 (328)
6 3e6j_A Variable lymphocyte rec 98.5 2.2E-07 7.5E-12 65.2 5.9 65 67-131 16-96 (229)
7 3g39_A Variable lymphocyte rec 98.3 9.1E-07 3.1E-11 59.3 5.4 38 82-119 31-68 (170)
8 3rgz_A Protein brassinosteroid 98.3 5.5E-07 1.9E-11 73.2 5.0 40 83-122 634-673 (768)
9 2o6s_A Variable lymphocyte rec 98.3 1.2E-06 4E-11 60.2 5.4 63 69-131 6-84 (208)
10 2ifg_A High affinity nerve gro 98.3 1.2E-06 4E-11 64.6 5.6 38 83-120 33-71 (347)
11 2o6r_A Variable lymphocyte rec 98.2 1.5E-06 5.3E-11 58.1 5.4 38 82-119 29-66 (177)
12 2z81_A CD282 antigen, TOLL-lik 98.2 1.8E-06 6.1E-11 67.0 4.8 39 82-120 27-65 (549)
13 1w8a_A SLIT protein; signaling 98.1 3.1E-06 1E-10 57.7 5.3 50 82-131 55-110 (192)
14 2wfh_A SLIT homolog 2 protein 98.1 5.2E-06 1.8E-10 56.8 5.7 49 82-130 55-109 (193)
15 2v9t_B SLIT homolog 2 protein 98.1 5.1E-06 1.7E-10 57.8 5.1 38 82-119 57-94 (220)
16 2r9u_A Variable lymphocyte rec 98.1 7.2E-06 2.5E-10 55.2 5.6 37 83-119 35-71 (174)
17 2z80_A TOLL-like receptor 2, v 98.0 5.7E-06 1.9E-10 61.1 4.8 38 82-119 53-90 (353)
18 1w8a_A SLIT protein; signaling 98.0 6E-06 2E-10 56.2 4.2 51 81-131 78-134 (192)
19 3m19_A Variable lymphocyte rec 98.0 5.1E-06 1.7E-10 58.7 3.5 38 82-119 60-97 (251)
20 2o6q_A Variable lymphocyte rec 98.0 4.8E-06 1.6E-10 59.4 3.4 50 82-131 38-93 (270)
21 3v47_A TOLL-like receptor 5B a 97.9 1.5E-05 5E-10 60.4 4.9 50 82-131 31-87 (455)
22 1ogq_A PGIP-2, polygalacturona 97.9 8.6E-06 2.9E-10 59.4 3.4 43 81-123 244-286 (313)
23 2wfh_A SLIT homolog 2 protein 97.8 1.8E-05 6E-10 54.1 4.7 38 82-119 79-116 (193)
24 2je0_A Acidic leucine-rich nuc 97.8 1.8E-05 6.2E-10 51.3 3.8 49 81-131 42-96 (149)
25 2v70_A SLIT-2, SLIT homolog 2 97.8 3E-05 1E-09 53.9 5.0 37 83-119 107-143 (220)
26 3g39_A Variable lymphocyte rec 97.7 3.4E-05 1.2E-09 51.5 4.5 51 81-131 54-110 (170)
27 2ft3_A Biglycan; proteoglycan, 97.7 3.6E-05 1.2E-09 56.2 5.0 62 70-131 33-110 (332)
28 2z66_A Variable lymphocyte rec 97.7 3.8E-05 1.3E-09 55.4 5.0 62 69-131 6-86 (306)
29 1xku_A Decorin; proteoglycan, 97.7 5E-05 1.7E-09 55.4 5.6 63 69-131 30-108 (330)
30 2je0_A Acidic leucine-rich nuc 97.7 2.7E-05 9.1E-10 50.5 3.6 38 82-119 65-102 (149)
31 4g8a_A TOLL-like receptor 4; l 97.7 3.7E-05 1.3E-09 60.0 4.8 39 82-120 495-533 (635)
32 4fcg_A Uncharacterized protein 97.7 2.9E-05 1E-09 57.0 3.6 44 82-125 254-297 (328)
33 2ell_A Acidic leucine-rich nuc 97.7 2.5E-05 8.4E-10 51.7 2.9 48 82-131 50-103 (168)
34 3oja_A Leucine-rich immune mol 97.7 5E-05 1.7E-09 58.8 5.0 48 72-119 111-158 (487)
35 2v70_A SLIT-2, SLIT homolog 2 97.7 5.4E-05 1.9E-09 52.5 4.7 50 82-131 82-137 (220)
36 2v9t_B SLIT homolog 2 protein 97.6 6.2E-05 2.1E-09 52.2 4.9 50 82-131 81-136 (220)
37 2ifg_A High affinity nerve gro 97.6 5.3E-05 1.8E-09 55.6 4.7 50 81-130 56-110 (347)
38 2r9u_A Variable lymphocyte rec 97.6 6.4E-05 2.2E-09 50.4 4.7 51 81-131 57-113 (174)
39 3vq2_A TLR4, TOLL-like recepto 97.6 7.8E-05 2.7E-09 58.5 5.2 39 82-120 57-95 (606)
40 4g8a_A TOLL-like receptor 4; l 97.6 6.9E-05 2.4E-09 58.5 4.9 51 81-131 518-575 (635)
41 3zyi_A Leucine-rich repeat-con 97.6 9.7E-05 3.3E-09 56.3 5.5 39 82-120 76-114 (452)
42 2o6r_A Variable lymphocyte rec 97.6 8.1E-05 2.8E-09 49.6 4.6 50 82-131 77-132 (177)
43 4eco_A Uncharacterized protein 97.6 4E-05 1.4E-09 61.1 3.5 51 81-131 206-281 (636)
44 2ell_A Acidic leucine-rich nuc 97.6 5.7E-05 1.9E-09 49.9 3.6 50 82-131 72-128 (168)
45 2id5_A Lingo-1, leucine rich r 97.6 0.00011 3.6E-09 56.2 5.6 38 82-119 57-94 (477)
46 3cvr_A Invasion plasmid antige 97.6 1.5E-05 5.1E-10 63.3 0.8 66 61-131 35-108 (571)
47 2z62_A TOLL-like receptor 4, v 97.6 0.00013 4.5E-09 51.8 5.7 38 82-119 53-90 (276)
48 3a79_B TLR6, VLRB.59, TOLL-lik 97.5 9.4E-05 3.2E-09 57.8 4.9 50 82-131 77-129 (562)
49 1dce_A Protein (RAB geranylger 97.5 9.8E-05 3.4E-09 58.4 4.9 37 82-120 487-523 (567)
50 4ezg_A Putative uncharacterize 97.5 6.8E-05 2.3E-09 50.9 3.5 38 82-119 89-126 (197)
51 1wwl_A Monocyte differentiatio 97.5 3.1E-05 1E-09 56.3 1.8 49 82-131 122-181 (312)
52 3m19_A Variable lymphocyte rec 97.5 0.00012 4E-09 51.5 4.7 51 81-131 83-139 (251)
53 4glp_A Monocyte differentiatio 97.5 6.3E-05 2.1E-09 54.6 3.3 49 83-131 226-280 (310)
54 2xot_A Amphoterin-induced prot 97.5 0.00014 4.8E-09 54.0 5.1 37 83-119 66-102 (361)
55 3rw6_A Nuclear RNA export fact 97.5 7.2E-05 2.5E-09 54.0 3.4 51 81-131 170-228 (267)
56 2o6s_A Variable lymphocyte rec 97.4 0.00017 5.7E-09 49.2 4.7 37 83-119 102-138 (208)
57 3oja_A Leucine-rich immune mol 97.4 0.00018 6E-09 55.7 5.3 51 81-131 144-199 (487)
58 2z66_A Variable lymphocyte rec 97.4 0.00016 5.6E-09 52.0 4.8 37 83-119 177-213 (306)
59 3o53_A Protein LRIM1, AGAP0063 97.4 0.00011 3.9E-09 53.4 3.8 49 81-131 58-107 (317)
60 4ecn_A Leucine-rich repeat pro 97.4 7.6E-05 2.6E-09 62.0 3.1 51 81-131 448-523 (876)
61 2z7x_B TOLL-like receptor 1, v 97.4 9.9E-05 3.4E-09 56.9 3.4 51 81-131 45-98 (520)
62 3e6j_A Variable lymphocyte rec 97.4 0.00022 7.6E-09 49.6 4.7 36 83-118 90-125 (229)
63 1ziw_A TOLL-like receptor 3; i 97.3 0.00033 1.1E-08 55.6 5.9 38 82-119 50-87 (680)
64 1ozn_A Reticulon 4 receptor; N 97.3 0.00027 9.1E-09 50.4 4.9 50 82-131 178-233 (285)
65 3v47_A TOLL-like receptor 5B a 97.3 0.00023 7.9E-09 53.8 4.7 37 83-119 325-361 (455)
66 2ft3_A Biglycan; proteoglycan, 97.3 0.0003 1E-08 51.3 5.1 51 81-131 78-131 (332)
67 3zyi_A Leucine-rich repeat-con 97.3 0.00024 8.1E-09 54.1 4.7 50 82-131 219-274 (452)
68 1wwl_A Monocyte differentiatio 97.3 0.00015 5.3E-09 52.6 3.5 38 82-119 150-187 (312)
69 1xku_A Decorin; proteoglycan, 97.3 0.00027 9.1E-09 51.5 4.7 51 81-131 76-129 (330)
70 4b8c_D Glucose-repressible alc 97.3 0.00013 4.3E-09 59.4 3.1 35 83-118 249-283 (727)
71 3rfs_A Internalin B, repeat mo 97.3 0.00029 1E-08 50.1 4.7 37 83-119 111-147 (272)
72 1dce_A Protein (RAB geranylger 97.3 0.00025 8.5E-09 56.1 4.6 50 81-130 508-567 (567)
73 2xot_A Amphoterin-induced prot 97.3 0.00024 8.2E-09 52.7 4.3 38 82-119 89-126 (361)
74 1a9n_A U2A', U2A'; complex (nu 97.3 0.00022 7.5E-09 47.5 3.7 50 82-131 65-121 (176)
75 1jl5_A Outer protein YOPM; leu 97.3 5.9E-05 2E-09 57.9 1.0 49 82-130 358-423 (454)
76 1p9a_G Platelet glycoprotein I 97.3 0.0003 1E-08 50.7 4.6 50 82-131 32-85 (290)
77 4glp_A Monocyte differentiatio 97.3 0.00017 5.7E-09 52.3 3.2 50 82-131 146-205 (310)
78 3rfs_A Internalin B, repeat mo 97.2 0.00034 1.2E-08 49.7 4.7 37 83-119 87-123 (272)
79 2z81_A CD282 antigen, TOLL-lik 97.2 0.00032 1.1E-08 54.2 4.8 38 82-119 75-112 (549)
80 2z80_A TOLL-like receptor 2, v 97.2 0.00036 1.2E-08 51.3 4.9 50 82-131 77-132 (353)
81 3oja_B Anopheles plasmodium-re 97.2 0.00028 9.6E-09 55.7 4.4 50 82-131 255-309 (597)
82 3o6n_A APL1; leucine-rich repe 97.2 0.00031 1.1E-08 52.2 4.4 50 82-131 249-303 (390)
83 2z62_A TOLL-like receptor 4, v 97.2 0.00043 1.5E-08 49.1 4.9 38 82-119 77-114 (276)
84 4fmz_A Internalin; leucine ric 97.2 0.00023 7.7E-09 52.0 3.5 50 82-131 288-341 (347)
85 2z7x_B TOLL-like receptor 1, v 97.2 0.00042 1.5E-08 53.3 5.1 37 83-119 350-388 (520)
86 3zyj_A Leucine-rich repeat-con 97.2 0.00053 1.8E-08 52.0 5.4 38 82-119 89-126 (440)
87 3vq2_A TLR4, TOLL-like recepto 97.2 0.00042 1.5E-08 54.3 4.9 38 82-119 474-511 (606)
88 4ezg_A Putative uncharacterize 97.2 0.00036 1.2E-08 47.3 3.9 50 82-131 113-167 (197)
89 4b8c_D Glucose-repressible alc 97.2 0.00032 1.1E-08 57.0 4.2 48 82-131 271-324 (727)
90 3t6q_A CD180 antigen; protein- 97.2 0.00033 1.1E-08 54.9 4.1 37 83-119 83-119 (606)
91 1ozn_A Reticulon 4 receptor; N 97.2 0.00048 1.6E-08 49.1 4.7 37 83-119 107-143 (285)
92 1p9a_G Platelet glycoprotein I 97.1 0.00045 1.5E-08 49.8 4.5 37 83-119 126-162 (290)
93 3j0a_A TOLL-like receptor 5; m 97.1 0.00031 1E-08 57.7 4.0 38 82-119 74-111 (844)
94 3j0a_A TOLL-like receptor 5; m 97.1 0.00038 1.3E-08 57.1 4.6 50 82-131 49-105 (844)
95 3zyj_A Leucine-rich repeat-con 97.1 0.00043 1.5E-08 52.5 4.5 50 82-131 208-263 (440)
96 2id5_A Lingo-1, leucine rich r 97.1 0.00052 1.8E-08 52.3 4.9 39 82-120 33-71 (477)
97 3o53_A Protein LRIM1, AGAP0063 97.1 0.00064 2.2E-08 49.4 5.0 48 83-130 146-198 (317)
98 2z63_A TOLL-like receptor 4, v 97.1 0.00057 1.9E-08 52.9 4.9 50 82-131 471-526 (570)
99 1jl5_A Outer protein YOPM; leu 97.1 0.00047 1.6E-08 52.9 4.3 49 81-131 131-181 (454)
100 3t6q_A CD180 antigen; protein- 97.1 0.0005 1.7E-08 53.9 4.5 38 82-119 58-95 (606)
101 2xwt_C Thyrotropin receptor; s 97.1 0.00057 2E-08 47.5 4.3 38 82-119 32-70 (239)
102 3a79_B TLR6, VLRB.59, TOLL-lik 97.1 0.00067 2.3E-08 52.9 5.1 37 83-119 379-417 (562)
103 2o6q_A Variable lymphocyte rec 97.0 0.00073 2.5E-08 47.9 4.7 19 101-119 153-171 (270)
104 4ay9_X Follicle-stimulating ho 97.0 0.00038 1.3E-08 51.3 3.2 52 70-122 9-71 (350)
105 3oja_B Anopheles plasmodium-re 96.9 0.00094 3.2E-08 52.7 4.8 38 83-120 77-114 (597)
106 3o6n_A APL1; leucine-rich repe 96.9 0.0011 3.6E-08 49.4 4.7 36 83-119 119-155 (390)
107 1a9n_A U2A', U2A'; complex (nu 96.9 0.00088 3E-08 44.5 3.9 37 82-119 89-127 (176)
108 2z63_A TOLL-like receptor 4, v 96.9 0.0011 3.8E-08 51.3 4.6 50 82-131 53-108 (570)
109 1ds9_A Outer arm dynein; leuci 96.8 0.00013 4.3E-09 49.6 -0.9 48 81-131 48-101 (198)
110 1xeu_A Internalin C; cellular 96.8 0.0014 4.8E-08 46.5 4.5 48 82-131 107-158 (263)
111 3g06_A SSPH2 (leucine-rich rep 96.8 0.00012 4.3E-09 58.5 -1.3 45 82-130 62-108 (622)
112 1ziw_A TOLL-like receptor 3; i 96.8 0.001 3.4E-08 52.9 4.0 50 82-131 74-129 (680)
113 3bz5_A Internalin-J, INLJ; leu 96.8 0.0014 4.9E-08 50.2 4.7 48 81-131 64-114 (457)
114 2ast_B S-phase kinase-associat 96.8 0.00058 2E-08 49.5 2.3 33 83-115 120-152 (336)
115 1h6t_A Internalin B; cell adhe 96.7 0.0017 5.8E-08 46.8 4.6 35 83-119 92-126 (291)
116 1xeu_A Internalin C; cellular 96.7 0.002 6.8E-08 45.7 4.7 48 82-131 64-114 (263)
117 3goz_A Leucine-rich repeat-con 96.7 0.0013 4.3E-08 48.7 3.6 50 82-131 52-117 (362)
118 3goz_A Leucine-rich repeat-con 96.6 0.00087 3E-08 49.5 2.6 51 81-131 80-146 (362)
119 2xwt_C Thyrotropin receptor; s 96.6 0.0034 1.2E-07 43.5 5.4 50 82-131 180-234 (239)
120 3cvr_A Invasion plasmid antige 96.6 0.0019 6.6E-08 51.2 4.4 34 82-119 101-134 (571)
121 1ds9_A Outer arm dynein; leuci 96.6 0.00017 5.9E-09 48.9 -1.4 49 82-131 71-123 (198)
122 1h6t_A Internalin B; cell adhe 96.6 0.0028 9.6E-08 45.6 4.8 36 82-119 113-148 (291)
123 1h6u_A Internalin H; cell adhe 96.6 0.0026 8.8E-08 46.1 4.6 48 82-131 86-137 (308)
124 1m9s_A Internalin B; cell inva 96.5 0.0023 8E-08 50.9 4.4 36 82-119 132-167 (605)
125 2ast_B S-phase kinase-associat 96.4 0.00095 3.3E-08 48.4 1.6 51 81-131 93-150 (336)
126 2ca6_A RAN GTPase-activating p 96.4 0.0019 6.5E-08 48.0 2.9 38 82-119 217-258 (386)
127 1m9s_A Internalin B; cell inva 96.3 0.0037 1.3E-07 49.8 4.5 46 83-130 89-138 (605)
128 2ca6_A RAN GTPase-activating p 96.3 0.00083 2.8E-08 49.9 0.6 39 81-119 94-136 (386)
129 3bz5_A Internalin-J, INLJ; leu 96.3 0.0038 1.3E-07 47.8 4.3 37 82-121 213-249 (457)
130 3g06_A SSPH2 (leucine-rich rep 96.3 0.00065 2.2E-08 54.4 -0.2 41 82-123 262-302 (622)
131 1h6u_A Internalin H; cell adhe 96.2 0.0048 1.6E-07 44.7 4.3 35 83-119 131-165 (308)
132 1o6v_A Internalin A; bacterial 96.1 0.0056 1.9E-07 46.6 4.4 9 85-93 291-299 (466)
133 1o6v_A Internalin A; bacterial 96.0 0.0069 2.4E-07 46.1 4.6 36 82-119 69-104 (466)
134 4fmz_A Internalin; leucine ric 95.9 0.0092 3.2E-07 43.3 4.6 35 83-119 223-257 (347)
135 1z7x_W Ribonuclease inhibitor; 95.6 0.0073 2.5E-07 45.5 3.0 38 82-119 86-127 (461)
136 3rw6_A Nuclear RNA export fact 95.5 0.012 4E-07 42.4 3.8 39 81-121 196-236 (267)
137 3un9_A NLR family member X1; l 95.1 0.0084 2.9E-07 44.8 2.0 17 102-118 180-196 (372)
138 1z7x_W Ribonuclease inhibitor; 95.0 0.0095 3.2E-07 44.9 2.0 38 82-119 257-298 (461)
139 4ay9_X Follicle-stimulating ho 94.8 0.037 1.3E-06 40.5 4.7 38 82-119 178-216 (350)
140 3un9_A NLR family member X1; l 94.5 0.014 4.8E-07 43.6 1.9 50 82-131 184-247 (372)
141 3ogk_B Coronatine-insensitive 94.5 0.01 3.4E-07 46.2 1.1 37 83-119 465-502 (592)
142 3rfe_A Platelet glycoprotein I 94.1 0.039 1.3E-06 35.2 3.0 37 82-118 32-68 (130)
143 1io0_A Tropomodulin; LRR prote 93.3 0.043 1.5E-06 36.8 2.3 37 82-118 66-106 (185)
144 3rfe_A Platelet glycoprotein I 92.7 0.13 4.3E-06 32.7 3.8 45 85-131 12-63 (130)
145 2p1m_B Transport inhibitor res 92.6 0.024 8.1E-07 44.0 0.2 49 82-130 457-513 (594)
146 1io0_A Tropomodulin; LRR prote 92.2 0.073 2.5E-06 35.6 2.3 50 82-131 94-159 (185)
147 3e4g_A ATP synthase subunit S, 91.7 0.063 2.1E-06 36.3 1.5 50 82-131 62-122 (176)
148 3ogk_B Coronatine-insensitive 91.2 0.069 2.3E-06 41.4 1.4 36 83-118 166-205 (592)
149 2p1m_B Transport inhibitor res 90.6 0.044 1.5E-06 42.5 -0.2 49 82-131 433-489 (594)
150 2ra8_A Uncharacterized protein 88.4 0.096 3.3E-06 39.1 0.2 16 104-119 278-293 (362)
151 1pgv_A TMD-1, tropomodulin TMD 86.7 0.53 1.8E-05 32.2 3.1 50 81-130 70-133 (197)
152 2ra8_A Uncharacterized protein 84.2 0.26 8.8E-06 36.7 0.6 38 82-119 280-321 (362)
153 3sb4_A Hypothetical leucine ri 79.0 2.2 7.6E-05 30.5 4.0 33 82-115 227-260 (329)
154 3sb4_A Hypothetical leucine ri 51.4 8.3 0.00028 27.5 2.3 36 82-118 102-137 (329)
155 4fdw_A Leucine rich hypothetic 27.4 51 0.0018 24.4 3.3 35 83-118 159-193 (401)
156 3ox7_P MH027; urokinase-type p 20.2 25 0.00085 14.8 0.2 9 68-76 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=1e-15 Score=112.64 Aligned_cols=93 Identities=30% Similarity=0.566 Sum_probs=79.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc--cceeeeCCC---CCEEEEecCCCCcce--eCchhhcCCcccc
Q 032885 36 ASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--WFHITCNQD---NRVTRLDLGNSNLSG--RLVPELGKLEHLQ 108 (131)
Q Consensus 36 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~~C~--w~gv~C~~~---~~v~~l~l~~~~l~G--~ip~~l~~L~~L~ 108 (131)
.|.++|..+|.+||+.+.+|. .+.+|... .++|. |.||.|+.. ++|+.++++++++.| .+|+.+.++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 467889999999999998775 67899765 68998 999999853 799999999999999 9999999999999
Q ss_pred eeeccC-CcccCCCCC------CCceeec
Q 032885 109 YLYVNQ-NLFLFISFH------NMYILNI 130 (131)
Q Consensus 109 ~L~L~~-N~l~G~~~~------~l~~L~l 130 (131)
+|++++ |+++|.+|. +|+.|+|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~L 108 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYI 108 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEE
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEEC
Confidence 999995 999987764 4566665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=3.1e-16 Score=127.40 Aligned_cols=94 Identities=26% Similarity=0.388 Sum_probs=76.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccceeeeCCCCCEEEEecCCCCccee---Cch------------
Q 032885 35 VASGNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCTWFHITCNQDNRVTRLDLGNSNLSGR---LVP------------ 99 (131)
Q Consensus 35 ~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~l~G~---ip~------------ 99 (131)
....++|+++|++||+.+.+|. .+.+|+.. .++|.|.||+|+ .++|+.|+++++++.|. +|+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~-~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT-SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCC-CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446788999999999998887 78999854 689999999998 78999999999999987 554
Q ss_pred -----------hhcCCcccceeeccCCcccCCCCC--------CCceeecC
Q 032885 100 -----------ELGKLEHLQYLYVNQNLFLFISFH--------NMYILNIN 131 (131)
Q Consensus 100 -----------~l~~L~~L~~L~L~~N~l~G~~~~--------~l~~L~ls 131 (131)
.++++++|++|+|++|.++|.+|. +|+.||||
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence 566778888888888888875554 55666664
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.46 E-value=6e-14 Score=112.06 Aligned_cols=78 Identities=23% Similarity=0.281 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCccc---ceeeeCCCCCEEEEecCCCCcceeCchhhcCCccc
Q 032885 39 NSEGDALYALRRSLSDPDNV--------LQSWDPTLVNPCTW---FHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHL 107 (131)
Q Consensus 39 ~~~~~~L~~~~~~l~~~~~~--------l~~W~~~~~~~C~w---~gv~C~~~~~v~~l~l~~~~l~G~ip~~l~~L~~L 107 (131)
..|..+|.+++..+.++... ..+|+.. .++|.| .||.|+..++|++|++++++++|.+|+++++|++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 46889999999998644211 2369876 689999 99999888999999999999999999999999999
Q ss_pred ceeeccCCcc
Q 032885 108 QYLYVNQNLF 117 (131)
Q Consensus 108 ~~L~L~~N~l 117 (131)
++|+|++|++
T Consensus 108 ~~L~Ls~N~~ 117 (636)
T 4eco_A 108 EVLALGSHGE 117 (636)
T ss_dssp CEEESCCGGG
T ss_pred eEEECcCCcc
Confidence 9999999965
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=1.1e-13 Score=114.34 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--ccc------------ceeeeCCCCCEEEEecCCCCcceeCch
Q 032885 38 GNSEGDALYALRRSLSDPDNVLQSWDPTL----VNP--CTW------------FHITCNQDNRVTRLDLGNSNLSGRLVP 99 (131)
Q Consensus 38 ~~~~~~~L~~~~~~l~~~~~~l~~W~~~~----~~~--C~w------------~gv~C~~~~~v~~l~l~~~~l~G~ip~ 99 (131)
...|..+|.+||+.+.+| +|+.+. .+| |.| .||.|+..++|++|+|++++++|.+|+
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 457899999999999765 676553 356 999 999998889999999999999999999
Q ss_pred hhcCCcccceeec-cCCcccCCCCC
Q 032885 100 ELGKLEHLQYLYV-NQNLFLFISFH 123 (131)
Q Consensus 100 ~l~~L~~L~~L~L-~~N~l~G~~~~ 123 (131)
++++|++|+.|+| ++|.++|..|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~ 366 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLF 366 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCB
T ss_pred HHhccccceEeeecccccccccccc
Confidence 9999999999999 99999997543
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.00 E-value=4.4e-11 Score=88.48 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=70.5
Q ss_pred hhhccCChhHHHHHHHHHHhcC-CCCCCCCCCC---CCCCCCcccceeeeC---------CCCCEEEEecCCCCcceeCc
Q 032885 32 LVAVASGNSEGDALYALRRSLS-DPDNVLQSWD---PTLVNPCTWFHITCN---------QDNRVTRLDLGNSNLSGRLV 98 (131)
Q Consensus 32 ~~~~~~~~~~~~~L~~~~~~l~-~~~~~l~~W~---~~~~~~C~w~gv~C~---------~~~~v~~l~l~~~~l~G~ip 98 (131)
.+......+|..+|.+||..+. ++.+....|. ....++|.|.|+.|+ ...+|+.|+++++++. .+|
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 3344556788999999999874 5555556783 233678999999995 1367889999888887 788
Q ss_pred hhhcCCcccceeeccCCcccCCCCC------CCceeec
Q 032885 99 PELGKLEHLQYLYVNQNLFLFISFH------NMYILNI 130 (131)
Q Consensus 99 ~~l~~L~~L~~L~L~~N~l~G~~~~------~l~~L~l 130 (131)
+.++++++|++|+|++|.++ .+|. +|+.|||
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 134 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence 88888888888888888887 5543 4455555
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.48 E-value=2.2e-07 Score=65.15 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=51.0
Q ss_pred CCCcccceeeeCCC----------CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeec
Q 032885 67 VNPCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNI 130 (131)
Q Consensus 67 ~~~C~w~gv~C~~~----------~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~l 130 (131)
...|.|.++.|... ..++.|++++|++++..|..+.++++|++|+|++|.+++.. .++|+.|||
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 47899999999642 25788999999999888888888888999999988887632 345677776
Q ss_pred C
Q 032885 131 N 131 (131)
Q Consensus 131 s 131 (131)
+
T Consensus 96 s 96 (229)
T 3e6j_A 96 G 96 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.31 E-value=9.1e-07 Score=59.34 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=21.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|++++..|..+.++++|++|+|++|.+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence 34555555555555555555555555555555555554
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.31 E-value=5.5e-07 Score=73.20 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF 122 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~ 122 (131)
++.|++++|+++|.+|.++++++.|+.|+|++|.++|.+|
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 4445555555555555555555555555555555554444
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.27 E-value=1.2e-06 Score=60.15 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=41.0
Q ss_pred CcccceeeeCCC----------CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 69 PCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 69 ~C~w~gv~C~~~----------~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.|.|.++.|... ..++.|++++|++++..+..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 467888888532 24677888888777554445677777777777777777632 2345666653
No 10
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.2e-06 Score=64.56 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEEecCC-CCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 83 VTRLDLGN-SNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 83 v~~l~l~~-~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
++.|+|++ |.+++..|..+++|++|+.|+|++|+|+|.
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee
Confidence 55556654 555555555555666666666666666553
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.25 E-value=1.5e-06 Score=58.15 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|++++..+..+.++++|++|++++|.+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE
Confidence 35555666555554333344555555555555555554
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.16 E-value=1.8e-06 Score=66.99 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=24.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
.++.+++++|++++..|..+.++++|++|++++|.+++.
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc
Confidence 466666666666666666666666666666666666653
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.15 E-value=3.1e-06 Score=57.70 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=35.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|++++|.+++..|..+.++++|++|+|++|.+++..+ ++|+.|||+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 56777777777777777777777788888888887777432 455666664
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.10 E-value=5.2e-06 Score=56.76 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=27.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeec
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~l 130 (131)
.++.|++++|.+++..+..+.++++|++|+|++|.+++..+ ++|+.|+|
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35555566666655444556666666666666666665332 34455554
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.06 E-value=5.1e-06 Score=57.81 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=22.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+++..|..+.++++|++|+|++|.+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 34555555555555555556666666666666666654
No 16
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.05 E-value=7.2e-06 Score=55.18 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.|++++|++++..|..+.++++|++|+|++|.+++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 4455555555555555555555555555555555554
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.01 E-value=5.7e-06 Score=61.05 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|++++..+..+.++++|++|++++|.+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 45555555555554433345555555555555555554
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=6e-06 Score=56.23 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
..++.|++++|++++..|..+.++++|++|+|++|.++|..| ++|+.|+|+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 367888899999888888778888999999999998888544 355666664
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.95 E-value=5.1e-06 Score=58.66 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=21.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+++..|..+.++++|++|++++|.+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 35555555555555444445555556666666655554
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.95 E-value=4.8e-06 Score=59.38 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=39.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.|++++|++.+..+..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3677888888888666667999999999999999988632 3567888775
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.87 E-value=1.5e-05 Score=60.42 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=34.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC-------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS-------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~-------~~~l~~L~ls 131 (131)
+++.|++++|.+++..|..+.++++|++|++++|.+.+.+ .++|+.|||+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 5777888888777777777777777777777777766533 2445666654
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.86 E-value=8.6e-06 Score=59.43 Aligned_cols=43 Identities=28% Similarity=0.263 Sum_probs=38.4
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFH 123 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~ 123 (131)
..++.+++++|.++|.+|..+.++++|++|++++|.++|.+|.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 3688899999999999999999999999999999999997764
No 23
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.85 E-value=1.8e-05 Score=54.06 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=26.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+++..|..+.++++|++|+|++|.+++
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 46667777777776666667777777777777777765
No 24
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.79 E-value=1.8e-05 Score=51.31 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
..++.+++++|.+++. +.++++++|++|++++|.+++.+ .++|+.|+|+
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 4688999999999876 67899999999999999999843 4677888875
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.78 E-value=3e-05 Score=53.88 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=16.3
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.|++++|.+++..|..+.++++|++|+|++|.+++
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence 3344444444444444444444444444444444444
No 26
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.74 E-value=3.4e-05 Score=51.51 Aligned_cols=51 Identities=27% Similarity=0.292 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
..++.|++++|++++..|..+.++++|++|+|++|.+++..+ ++|+.|+|+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 368889999999986555557889999999999999988433 456677764
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.73 E-value=3.6e-05 Score=56.24 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=43.8
Q ss_pred cccceeeeCCC----------CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 70 CTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 70 C~w~gv~C~~~----------~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
|.|..+.|... ..++.+++++|++.+..|..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 67888887531 25778888888887766667888888888888888877743 2455666654
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.73 E-value=3.8e-05 Score=55.39 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=46.5
Q ss_pred CcccceeeeCCC----------CCEEEEecCCCCcceeCchh-hcCCcccceeeccCCcccCC--------CCCCCceee
Q 032885 69 PCTWFHITCNQD----------NRVTRLDLGNSNLSGRLVPE-LGKLEHLQYLYVNQNLFLFI--------SFHNMYILN 129 (131)
Q Consensus 69 ~C~w~gv~C~~~----------~~v~~l~l~~~~l~G~ip~~-l~~L~~L~~L~L~~N~l~G~--------~~~~l~~L~ 129 (131)
.|.|.++.|... ..++.|++++|++. .+|+. +.++++|++|++++|.++.. -.++|+.||
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 377889998642 26888999999988 56654 68899999999999988742 246677777
Q ss_pred cC
Q 032885 130 IN 131 (131)
Q Consensus 130 ls 131 (131)
|+
T Consensus 85 Ls 86 (306)
T 2z66_A 85 LS 86 (306)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.72 E-value=5e-05 Score=55.38 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=44.6
Q ss_pred CcccceeeeCC----------CCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 69 PCTWFHITCNQ----------DNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 69 ~C~w~gv~C~~----------~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.|.+..+.|.. ...++.+++++|++++..+..+.++++|++|++++|.+++..| ++|+.|+|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 35677777753 1256778888888887666678888888888888888877543 455666654
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.71 E-value=2.7e-05 Score=50.49 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=26.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+++.+|..+.++++|++|++++|.+++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCS
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCC
Confidence 56677777777776666666667777777777777666
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.69 E-value=3.7e-05 Score=60.05 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=24.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
.++.|++++|++++..|..+.++++|++|+|++|++++.
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence 455666666666666666666666666666666666653
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.66 E-value=2.9e-05 Score=57.02 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=27.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCCCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFHNM 125 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~~l 125 (131)
.++.+++++|++.+.+|..++++++|++|++++|++.|.+|..+
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 45556666666666666666666666666666666666655444
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.66 E-value=2.5e-05 Score=51.66 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=37.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.+++++|.+++. ..+..+++|++|++++|.+++.+ .++|+.|+|+
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 577888888888765 66888888888888888888843 4567777764
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.65 E-value=5e-05 Score=58.80 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=23.2
Q ss_pred cceeeeCCCCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 72 WFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 72 w~gv~C~~~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+.++.|..-..++.|++++|.+++..|..++++++|++|+|++|.++|
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 333444322334555555555555444445555555555555555554
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.65 E-value=5.4e-05 Score=52.52 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|++++|.+++..|..+.++++|++|+|++|.+++..| ++|+.|+|+
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 46667777777766666667777777777777777776433 445666653
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.64 E-value=6.2e-05 Score=52.22 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=27.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|++++|.++.--+..+.++++|++|+|++|.+++..| ++|+.|+|+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 45666666666663222234566666666666666666432 344555553
No 37
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.64 E-value=5.3e-05 Score=55.60 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=42.1
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCCC-----Cceeec
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFHN-----MYILNI 130 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~~-----l~~L~l 130 (131)
.+++.|+|++|+|+|..|..+.+|++|++|+|++|.|++..+.. |+.|+|
T Consensus 56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence 46899999999999999889999999999999999999854322 556665
No 38
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.63 E-value=6.4e-05 Score=50.45 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.+++.|++++|++++-.+..+.++++|++|+|++|.+++..+ ++|+.|+|+
T Consensus 57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 368899999999987444456899999999999999998433 456777764
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.58 E-value=7.8e-05 Score=58.46 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=21.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
+++.+++++|.+++..|..+.++++|++|+|++|.+++.
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 344555555555555455555555555555555555553
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.58 E-value=6.9e-05 Score=58.49 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=44.3
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC-------CCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF-------HNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~-------~~l~~L~ls 131 (131)
..++.|++++|++++..|..+.++++|++|+|++|++++..| ++|+.|+|+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 368899999999999888889999999999999999999543 567778775
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.58 E-value=9.7e-05 Score=56.26 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=27.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
.++.|++++|++++..|..+.++++|++|+|++|.+++.
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 114 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc
Confidence 567777777777776666677777777777777776663
No 42
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.57 E-value=8.1e-05 Score=49.58 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=32.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.+++++|.+++..+..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 5677777777777655555677777777777777777632 2345566553
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.57 E-value=4e-05 Score=61.12 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCccee-----------------Cchhhc--CCcccceeeccCCcccCCCCC------CCceeecC
Q 032885 81 NRVTRLDLGNSNLSGR-----------------LVPELG--KLEHLQYLYVNQNLFLFISFH------NMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~-----------------ip~~l~--~L~~L~~L~L~~N~l~G~~~~------~l~~L~ls 131 (131)
..++.+++++|.++|. +|+.++ ++++|++|++++|.+.|.+|. +|+.|||+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4678888888888886 888888 888888888888888887764 44566654
No 44
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.56 E-value=5.7e-05 Score=49.87 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=34.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC-------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS-------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~-------~~~l~~L~ls 131 (131)
+++.+++++|.+.+.+|..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 5677778888877777776667777777888777777621 3456666654
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=56.19 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=21.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+.+..|..+.++++|++|+|++|.+++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 34555555555555555555555555555555555554
No 46
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.56 E-value=1.5e-05 Score=63.26 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=40.5
Q ss_pred CCCCCCCCCc-----cccee-eeCCCCCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC--CCCCCCceeecC
Q 032885 61 SWDPTLVNPC-----TWFHI-TCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF--ISFHNMYILNIN 131 (131)
Q Consensus 61 ~W~~~~~~~C-----~w~gv-~C~~~~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G--~~~~~l~~L~ls 131 (131)
+|... .++| .|.|+ .|. .++++.|++++|++++ ||+.+. ++|++|+|++|.++. ..+++|+.|+|+
T Consensus 35 ~W~~~-~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls 108 (571)
T 3cvr_A 35 KWEKQ-ALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLPELPASLEYLDAC 108 (571)
T ss_dssp HHHTT-CCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred HHhcc-CCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccccccCCCCEEEcc
Confidence 35333 4567 58888 564 2467778888887776 776553 566777777776663 123455555553
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.55 E-value=0.00013 Score=51.80 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=24.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+.+..+..+.++++|++|++++|.+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 45666666666665555556666666666666666665
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.52 E-value=9.4e-05 Score=57.79 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=25.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC---CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI---SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~---~~~~l~~L~ls 131 (131)
.++.+++++|.+++..|..+.++++|++|++++|.++.. ..++|+.|||+
T Consensus 77 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls 129 (562)
T 3a79_B 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECC
T ss_pred CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECC
Confidence 355555555555555555555555555555555555531 12345555543
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.51 E-value=9.8e-05 Score=58.41 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=21.0
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
.++.|++++|.+++ +| .++++++|++|+|++|.+++.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 34555555555554 44 555566666666666666554
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.50 E-value=6.8e-05 Score=50.94 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=22.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+++..|..++++++|++|++++|.+++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 35555666666655555555556666666666665554
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.50 E-value=3.1e-05 Score=56.33 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=29.1
Q ss_pred CEEEEecCCCCcceeCchhhcCC-----cccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L-----~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.+++++|.+++. |..++.+ ++|++|++++|.+++.. .++|+.||||
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 456666666666665 5555555 66666666666666643 2345555553
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.49 E-value=0.00012 Score=51.52 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=35.9
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
..++.|++++|++++..+..+.++++|++|+|++|.+++.. .++|+.|+|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 35777888888887665566777888888888888877632 3456666664
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.49 E-value=6.3e-05 Score=54.56 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=24.6
Q ss_pred EEEEecCCCCcceeCchhhcCC---cccceeeccCCcccC---CCCCCCceeecC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKL---EHLQYLYVNQNLFLF---ISFHNMYILNIN 131 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L---~~L~~L~L~~N~l~G---~~~~~l~~L~ls 131 (131)
++.+++++|.+.+.+|+.+..+ ++|++|++++|.++. .++++|+.||||
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls 280 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLS 280 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECC
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECC
Confidence 4455555555555555555444 355555555555553 123344555543
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.48 E-value=0.00014 Score=53.97 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=17.5
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.|++++|++++..|..+.++++|++|+|++|.+++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 3444444444444433444455555555555555444
No 55
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.47 E-value=7.2e-05 Score=54.05 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCEEEEecCCCCcce--eCchhhcCCcccceeeccCCcccCC--C--CC--CCceeecC
Q 032885 81 NRVTRLDLGNSNLSG--RLVPELGKLEHLQYLYVNQNLFLFI--S--FH--NMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G--~ip~~l~~L~~L~~L~L~~N~l~G~--~--~~--~l~~L~ls 131 (131)
..++.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. + .+ +|+.|+|+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~ 228 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECT
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEcc
Confidence 368999999999998 7778888999999999999999983 1 12 66777764
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.43 E-value=0.00017 Score=49.21 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=16.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|++++..+..+.++++|++|++++|.+++
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 4444444444443333334444455555555554444
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.43 E-value=0.00018 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCEEEEecCCCCcceeCchhhc-CCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELG-KLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~-~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
..++.|++++|.+++.+|..+. ++++|++|+|++|.+++. .+++|+.||||
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 3689999999999998888876 788999999999988873 25667777765
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.43 E-value=0.00016 Score=52.01 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=16.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++..|..+.++++|++|++++|.+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 4444444444444444444444444444444444443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.41 E-value=0.00011 Score=53.38 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC-CCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI-SFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~-~~~~l~~L~ls 131 (131)
..++.+++++|.+++..| +..+++|++|++++|.+++. ..++|+.|+++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 357788888888877654 77888888888888888772 23556666553
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=7.6e-05 Score=61.96 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=39.2
Q ss_pred CCEEEEecCCCCcce-----------------eCchhhc--CCcccceeeccCCcccCCCCC------CCceeecC
Q 032885 81 NRVTRLDLGNSNLSG-----------------RLVPELG--KLEHLQYLYVNQNLFLFISFH------NMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G-----------------~ip~~l~--~L~~L~~L~L~~N~l~G~~~~------~l~~L~ls 131 (131)
..++.|++++|.++| .||+.++ ++++|++|+|++|.+.|.+|. +|+.|+|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 467888888888888 4888877 888888888888888887764 45666654
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.38 E-value=9.9e-05 Score=56.89 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC---CCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI---SFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~---~~~~l~~L~ls 131 (131)
.+++.+++++|.+++..|..++++++|++|+|++|.+++. ..++|+.|||+
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~ 98 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLS 98 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECC
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEecc
Confidence 3567777777777777777777777777777777777642 23456666664
No 62
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.36 E-value=0.00022 Score=49.63 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=17.3
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
++.|++++|.+++..+..+..+++|++|+|++|.++
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 444555555554333333444555555555555554
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.33 E-value=0.00033 Score=55.64 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=22.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.+++++|.+++..|..++++++|++|++++|.+++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 35555555555555555555666666666666665554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.32 E-value=0.00027 Score=50.43 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=30.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.+++++|.+++..|..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 4556666666666666666666666666666666666632 2455556553
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.31 E-value=0.00023 Score=53.78 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=15.6
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 3344444444443333344444444444444444443
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.31 E-value=0.0003 Score=51.26 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=42.7
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC---CCCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF---ISFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G---~~~~~l~~L~ls 131 (131)
..++.+++++|.+++..|..+.++++|++|++++|.++. .++++|+.|+|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~ 131 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECC
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECC
Confidence 468899999999999889999999999999999999875 234567777764
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.30 E-value=0.00024 Score=54.11 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=32.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|++++|.+.+..|..+.++++|++|++++|.+++..+ ++|+.|||+
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 34566677777777667777777777777777777766432 455666653
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.30 E-value=0.00015 Score=52.57 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=23.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|++.+..|..++++++|++|++++|.++|
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 45666666666665555566666666666666666544
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.30 E-value=0.00027 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=43.1
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC---CCCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF---ISFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G---~~~~~l~~L~ls 131 (131)
..++.+++++|.+.+..|..+.++++|++|++++|.++. .++++|+.|+++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECC
Confidence 468999999999998889999999999999999998875 345677777764
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=0.00013 Score=59.35 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=16.3
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
++.|+|++|.++ .||+.+++|++|++|+|++|.|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 334444444444 44444444444444444444444
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.28 E-value=0.00029 Score=50.11 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=18.2
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|++++..|..+.++++|++|++++|.+++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 4444555555544333344555555555555555544
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=0.00025 Score=56.10 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCEEEEecCCCCcceeC-chhhcCCcccceeeccCCcccCCC---------CCCCceeec
Q 032885 81 NRVTRLDLGNSNLSGRL-VPELGKLEHLQYLYVNQNLFLFIS---------FHNMYILNI 130 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~i-p~~l~~L~~L~~L~L~~N~l~G~~---------~~~l~~L~l 130 (131)
..++.|++++|.+++.. |..++++++|+.|+|++|.++|.. .++|+.|||
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 36889999999999987 999999999999999999999953 366777775
No 73
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.27 E-value=0.00024 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=22.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+.+..+..+.++++|++|+|++|.+++
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 45566666666655544455666666666666666655
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.27 E-value=0.00022 Score=47.51 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=30.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC-------CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI-------SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~-------~~~~l~~L~ls 131 (131)
.++.+++++|.+++..|..+..+++|++|++++|.++.. -.++|+.|+|+
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 566777777777754223347777777777777777531 12355666653
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.27 E-value=5.9e-05 Score=57.94 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=17.5
Q ss_pred CEEEEecCCCCcce--eCchhhcCC-------------cccceeeccCCcccC--CCCCCCceeec
Q 032885 82 RVTRLDLGNSNLSG--RLVPELGKL-------------EHLQYLYVNQNLFLF--ISFHNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G--~ip~~l~~L-------------~~L~~L~L~~N~l~G--~~~~~l~~L~l 130 (131)
.++.+++++|.++| .+|..+.++ ++|+.|++++|.++| .+|++++.|++
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~ 423 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRM 423 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence 56777788888877 777777777 678888888888887 77777777654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.26 E-value=0.0003 Score=50.73 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=33.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
.++.|++++|.+.+..|..+.++++|++|++++|.+++. ..++|+.|||+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECC
Confidence 567777777777777677777777777777777777652 23445555543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.25 E-value=0.00017 Score=52.29 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC----------CCCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF----------ISFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G----------~~~~~l~~L~ls 131 (131)
+++.+++++|.+.+..|..+.++++|++|+|++|.+.| .-.++|+.|+|+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 56777777777777666777777888888888887654 123456666654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.24 E-value=0.00034 Score=49.75 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=17.2
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++..+..+.++++|++|++++|.+++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc
Confidence 4444444444444333334444444444444444444
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.24 E-value=0.00032 Score=54.24 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=22.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+++..|..++++++|++|++++|.+++
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 45556666666655555556666666666666666654
No 80
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.24 E-value=0.00036 Score=51.32 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=31.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.|++++|++++..|..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 4666777777776666666666777777777777666522 2455666553
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.22 E-value=0.00028 Score=55.69 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=38.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC-----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI-----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~-----~~~~l~~L~ls 131 (131)
.++.|++++|.+.+.+|..++++++|+.|+|++|.+++. ..++|+.|+|+
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 567788888888888888888888888888888888772 24567777764
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.21 E-value=0.00031 Score=52.24 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=36.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC-----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI-----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~-----~~~~l~~L~ls 131 (131)
.++.+++++|.+.+..|..+.++++|++|++++|.+++. ..++|+.|+|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 466777888888777777788888888888888877762 24567777764
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.21 E-value=0.00043 Score=49.08 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=22.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 45666666666665555555555555555555555554
No 84
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.21 E-value=0.00023 Score=52.02 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=39.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC----CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF----HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~----~~l~~L~ls 131 (131)
.++.+++++|.+.+..|..+.++++|++|++++|.+++..| ++|+.||++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSS
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehh
Confidence 57778888888888888888888888888888888888543 567777764
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00042 Score=53.32 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEecCCCCcce--eCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSG--RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G--~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|++.+ .+|..+.++++|++|++++|.+++
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 4455555555554 444455555555555555555555
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.18 E-value=0.00053 Score=51.97 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=21.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.|++++|.+.+..+..+.++++|++|+|++|.+++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 34555555555555544555556666666666665554
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.16 E-value=0.00042 Score=54.25 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=21.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+++..|..+.++++|++|++++|.+++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 45555555555555555555555555555555555555
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.16 E-value=0.00036 Score=47.29 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=36.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC-----CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS-----FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~-----~~~l~~L~ls 131 (131)
.++.+++++|.+++..|..+.++++|++|++++|.+.+.+ .++|+.|+|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence 5778888888888888888888888888888888733322 3456666654
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.15 E-value=0.00032 Score=56.95 Aligned_cols=48 Identities=29% Similarity=0.461 Sum_probs=40.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|+|++|.++ .||..+++|++|++|+|++|.|+ .+| ++|+.|+|+
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 6888999999999 89999999999999999999987 444 355677764
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.15 E-value=0.00033 Score=54.87 Aligned_cols=37 Identities=19% Similarity=0.035 Sum_probs=15.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+.+..|..++++++|++|++++|.+++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 3344444444444444444444444444444444443
No 91
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.15 E-value=0.00048 Score=49.06 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=15.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|++.+..|..+.++++|++|++++|.+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 3444444444444333334444444444444444443
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.15 E-value=0.00045 Score=49.83 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=15.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++..+..+..+++|+.|+|++|++++
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 3444444444443322233444444444444444443
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.15 E-value=0.00031 Score=57.67 Aligned_cols=38 Identities=24% Similarity=0.052 Sum_probs=20.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+.+..|..++++++|++|+|++|.+++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 34555555555555555555555555555555555554
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.14 E-value=0.00038 Score=57.12 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=30.0
Q ss_pred CEEEEecCCCCcceeC-chhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRL-VPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~i-p~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.|++++|+..+.| |..+.++++|++|+|++|.+++..| ++|+.|||+
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 4555666666555566 4456777777777777777766433 344555553
No 95
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.14 E-value=0.00043 Score=52.45 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=29.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.|++++|.+++..|..+.++++|+.|++++|.+++.. .++|+.|||+
T Consensus 208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 3455666666666666666666666666666666666532 2445555553
No 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.13 E-value=0.00052 Score=52.35 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=22.6
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
.++.|++++|++++..|..+.++++|++|+|++|.+++.
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 71 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe
Confidence 345556666666555555566666666666666655553
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.10 E-value=0.00064 Score=49.38 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=21.8
Q ss_pred EEEEecCCCCcceeCchhhc-CCcccceeeccCCcccC----CCCCCCceeec
Q 032885 83 VTRLDLGNSNLSGRLVPELG-KLEHLQYLYVNQNLFLF----ISFHNMYILNI 130 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~-~L~~L~~L~L~~N~l~G----~~~~~l~~L~l 130 (131)
++.+++++|.+.+..|..+. .+++|++|++++|.+++ ..+++|+.|+|
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence 44444444444444444332 44555555555555443 11344455544
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.09 E-value=0.00057 Score=52.95 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=33.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.+++++|++++..|..+.++++|++|++++|.+++..+ ++|+.|+|+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 46667777777777767777777777777777777776433 344555553
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.09 E-value=0.00047 Score=52.90 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC--CCCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF--ISFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G--~~~~~l~~L~ls 131 (131)
..++.+++++|.+++ +| +++++++|++|++++|.+++ ..+++|+.|+|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~ 181 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECc
Confidence 367888999998887 88 59999999999999999998 445678888775
No 100
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.08 E-value=0.0005 Score=53.86 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=21.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 34555555555555555555555555555555555554
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.07 E-value=0.00057 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=22.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCc-ccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL-FLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~-l~G 119 (131)
.++.+++++|++++..+..+.++++|++|++++|. +++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~ 70 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce
Confidence 45666666666665544456666666666666664 444
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.07 E-value=0.00067 Score=52.92 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEEecCCCCcce--eCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSG--RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G--~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++ .+|..+.++++|++|++++|.+++
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 4445555555443 333444555555555555555554
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.04 E-value=0.00073 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=8.2
Q ss_pred hcCCcccceeeccCCcccC
Q 032885 101 LGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 101 l~~L~~L~~L~L~~N~l~G 119 (131)
+.++++|++|++++|.+++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred ccCCcccceeEecCCcCcE
Confidence 3444444444444444443
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.03 E-value=0.00038 Score=51.35 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=41.3
Q ss_pred cccceeeeCCC----------CCEEEEecCCCCcceeCch-hhcCCcccceeeccCCcccCCCC
Q 032885 70 CTWFHITCNQD----------NRVTRLDLGNSNLSGRLVP-ELGKLEHLQYLYVNQNLFLFISF 122 (131)
Q Consensus 70 C~w~gv~C~~~----------~~v~~l~l~~~~l~G~ip~-~l~~L~~L~~L~L~~N~l~G~~~ 122 (131)
|.+..|.|+.. ..++.|++++|+++ .||+ .+.++++|++|+|++|.+.+.+|
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 66888888531 25789999999998 4565 58999999999999999877544
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.91 E-value=0.00094 Score=52.66 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=24.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI 120 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~ 120 (131)
++.|++++|.+.+..|..++++++|++|+|++|.+++.
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence 44566666666666665666667777777777666663
No 106
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.90 E-value=0.0011 Score=49.37 Aligned_cols=36 Identities=25% Similarity=0.195 Sum_probs=17.9
Q ss_pred EEEEecCCCCcceeCchh-hcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPE-LGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~-l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+. .+|+. +.++++|++|++++|.+++
T Consensus 119 L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc
Confidence 445555555554 33333 3455555555555555554
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.89 E-value=0.00088 Score=44.50 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=20.9
Q ss_pred CEEEEecCCCCcceeCch--hhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVP--ELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~--~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|.+ +.+|+ .+..+++|+.|++++|.++.
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 455566666655 34444 45566666666666666553
No 108
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.0011 Score=51.32 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=35.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++.|++++|.+++..|..+.++++|++|++++|.+++.. .++|+.|+|+
T Consensus 53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 5677777777777766667777888888888888777643 3455666654
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.81 E-value=0.00013 Score=49.61 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
..++.+++++|++.+ +| .+.++++|++|++++|.++. +| ++|+.|+|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECc
Confidence 368899999999988 77 89999999999999999984 33 456777764
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.79 E-value=0.0014 Score=46.52 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=28.1
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
.++.+++++|++++ + +.+.++++|+.|++++|.+++. -.++|+.|+|+
T Consensus 107 ~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH 158 (263)
T ss_dssp SCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECT
T ss_pred cccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECC
Confidence 34555666665554 2 3466677777777777776662 23455666553
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.78 E-value=0.00012 Score=58.51 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=25.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC--CCCCCceeec
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI--SFHNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~--~~~~l~~L~l 130 (131)
.++.|++++|+++ .||. .+++|++|+|++|.+++. .+++|+.|+|
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~L 108 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSI 108 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEE
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEEC
Confidence 4566666666665 4554 456666666666666541 2344555554
No 112
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.78 E-value=0.001 Score=52.90 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=34.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCC------CCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISF------HNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~------~~l~~L~ls 131 (131)
.++.+++++|.+++.-+..++++++|++|++++|.+++..| ++|+.|||+
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 56778888887774333357888888888888888776432 456666664
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.78 E-value=0.0014 Score=50.23 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=34.5
Q ss_pred CCEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC---CCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI---SFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~---~~~~l~~L~ls 131 (131)
..++.+++++|++++ +| ++++++|++|++++|.+++. -.++|+.|+|+
T Consensus 64 ~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD 114 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceeecCCCCcCCEEECC
Confidence 357778888888877 33 77888888888888888873 23556777764
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.76 E-value=0.00058 Score=49.51 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=15.5
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQN 115 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N 115 (131)
++.++++++.+++.+|..++++++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 444444444444444444444444444444444
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.74 E-value=0.0017 Score=46.75 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=16.7
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+.+ + +.+.++++|++|++++|.+++
T Consensus 92 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 92 LGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp CCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC
Confidence 4444444444443 1 225555555555555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=96.70 E-value=0.002 Score=45.75 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=32.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC---CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI---SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~---~~~~l~~L~ls 131 (131)
.++.+++++|.+++. |+ +.++++|++|++++|.+++. ..++|+.|+|+
T Consensus 64 ~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~ 114 (263)
T 1xeu_A 64 NLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114 (263)
T ss_dssp TCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred CCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence 577888888887764 33 77888888888888877762 11455555553
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.68 E-value=0.0013 Score=48.67 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=42.1
Q ss_pred CEEEEecCCCCcceeCchhhcCC-----cccceeeccCCcccCCC-----------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKL-----EHLQYLYVNQNLFLFIS-----------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L-----~~L~~L~L~~N~l~G~~-----------~~~l~~L~ls 131 (131)
.++.+++++|.+.+..+..+..+ ++|++|+|++|.+++.. +++|+.|||+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 117 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence 68999999999998888777775 89999999999998743 2788999886
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.65 E-value=0.00087 Score=49.54 Aligned_cols=51 Identities=29% Similarity=0.185 Sum_probs=42.7
Q ss_pred CCEEEEecCCCCcceeCchhhcCC-----cccceeeccCCcccCCC-----------CCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKL-----EHLQYLYVNQNLFLFIS-----------FHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L-----~~L~~L~L~~N~l~G~~-----------~~~l~~L~ls 131 (131)
..++.+++++|.+++..+..++.. ++|++|++++|.+++.. +++|+.|||+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 568999999999998887755554 89999999999998843 5699999986
No 119
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.62 E-value=0.0034 Score=43.45 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=35.7
Q ss_pred CEEEEecCCCC-cceeCchhhcCC-cccceeeccCCcccCCC---CCCCceeecC
Q 032885 82 RVTRLDLGNSN-LSGRLVPELGKL-EHLQYLYVNQNLFLFIS---FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~-l~G~ip~~l~~L-~~L~~L~L~~N~l~G~~---~~~l~~L~ls 131 (131)
.++.+++++|. +++.-+..+.++ ++|++|++++|.+++.. +++++.|+++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECT
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeecc
Confidence 57788888884 775545567788 88888888888887632 4456666653
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.61 E-value=0.0019 Score=51.20 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=17.9
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|++++ ||. +.+ +|++|++++|.+++
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 45556666666555 554 433 45555555555544
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.61 E-value=0.00017 Score=48.94 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=37.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
.++.+++++|.+. .+|..+..+++|++|++++|.+++. -.++|+.|+|+
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 5788888888887 6888788888999999999998872 13456676664
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=96.57 E-value=0.0028 Score=45.56 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=16.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|++.+. +.+..+++|+.|++++|.+++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence 344555555554431 234444444444444444443
No 123
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.57 E-value=0.0026 Score=46.08 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=28.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~ls 131 (131)
.++.|++++|.+.+ + +.+.++++|++|++++|.+++. ..++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 86 KITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137 (308)
T ss_dssp SCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECC
Confidence 45666666666654 2 2466666666666666666652 23556666653
No 124
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.52 E-value=0.0023 Score=50.95 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=18.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.+++. +.+..+++|+.|+|++|.+++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 345555555555543 345555555555555555554
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.44 E-value=0.00095 Score=48.37 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCEEEEecCCCCccee-CchhhcCCcccceeeccCCcccCC------CCCCCceeecC
Q 032885 81 NRVTRLDLGNSNLSGR-LVPELGKLEHLQYLYVNQNLFLFI------SFHNMYILNIN 131 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~-ip~~l~~L~~L~~L~L~~N~l~G~------~~~~l~~L~ls 131 (131)
.+++.++++++.+++. +|..+..+++|++|++++|.+++. -.++|+.|+|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 3578888888888776 777788888888888888888762 24677777764
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.37 E-value=0.0019 Score=47.97 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=25.3
Q ss_pred CEEEEecCCCCcc----eeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLS----GRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~----G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.|++++|.++ +.+|..+..+++|++|+|++|.+++
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 4666677777665 5566666666777777777776665
No 127
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=96.33 E-value=0.0037 Score=49.81 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=21.4
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccCC----CCCCCceeec
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFI----SFHNMYILNI 130 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~----~~~~l~~L~l 130 (131)
++.|++++|.+.+ + +.+..+++|+.|+|++|.+++. ..++|+.|+|
T Consensus 89 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 89 LGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 138 (605)
T ss_dssp CCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEEC
T ss_pred CCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCCccccCCCccCEEEC
Confidence 4444444444443 1 2345555555555555555441 1244555554
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=96.30 E-value=0.00083 Score=49.92 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=26.8
Q ss_pred CCEEEEecCCCCcce----eCchhhcCCcccceeeccCCcccC
Q 032885 81 NRVTRLDLGNSNLSG----RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G----~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
..++.|++++|.+.+ .+|..+.++++|++|+|++|.+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 356777777777766 466667777777777777777653
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.29 E-value=0.0038 Score=47.84 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.7
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFIS 121 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~ 121 (131)
.++.+++++|.+++ +| ++.+++|++|++++|.++|..
T Consensus 213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 46677777777777 55 777777777777777777743
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.26 E-value=0.00065 Score=54.38 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=28.5
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccCCCCC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLFISFH 123 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G~~~~ 123 (131)
.++.|++++|.++ .||+.+.++++|+.|+|++|.++|..|.
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4566677777776 6677777777777777777777774443
No 131
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=96.22 E-value=0.0048 Score=44.66 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=14.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++.. + +.++++|+.|++++|.+++
T Consensus 131 L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 131 LQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCC
Confidence 444444444444321 1 4444444444444444443
No 132
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.12 E-value=0.0056 Score=46.64 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=3.3
Q ss_pred EEecCCCCc
Q 032885 85 RLDLGNSNL 93 (131)
Q Consensus 85 ~l~l~~~~l 93 (131)
.+++++|.+
T Consensus 291 ~L~L~~n~l 299 (466)
T 1o6v_A 291 NLELNENQL 299 (466)
T ss_dssp EEECCSSCC
T ss_pred eEEcCCCcc
Confidence 333333333
No 133
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=96.05 E-value=0.0069 Score=46.13 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=18.4
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.|++++|.+.+.. + +.++++|++|++++|.+++
T Consensus 69 ~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 69 NLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp TCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred CCCEEECCCCccCCch-h-hhccccCCEEECCCCcccc
Confidence 4555555555555432 2 5555555555555555544
No 134
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=95.91 E-value=0.0092 Score=43.33 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=15.9
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|.+++.- + +..+++|++|++++|.+++
T Consensus 223 L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 223 LNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred CCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCC
Confidence 444555555444322 1 4444444444444444443
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.58 E-value=0.0073 Score=45.49 Aligned_cols=38 Identities=34% Similarity=0.423 Sum_probs=28.7
Q ss_pred CEEEEecCCCCcc----eeCchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLS----GRLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~----G~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.+++++|++. +.+|..+.++++|++|++++|.+++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 5778888888777 3567777788888888888887764
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.55 E-value=0.012 Score=42.43 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCEEEEecCCCCcceeCchhhcCCc--ccceeeccCCcccCCC
Q 032885 81 NRVTRLDLGNSNLSGRLVPELGKLE--HLQYLYVNQNLFLFIS 121 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G~ip~~l~~L~--~L~~L~L~~N~l~G~~ 121 (131)
..+..|+|++|.+++. .++..+. +|++|+|++|.+++.+
T Consensus 196 ~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 196 PNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp TTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 3689999999999875 3455555 9999999999999843
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.13 E-value=0.0084 Score=44.84 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=7.8
Q ss_pred cCCcccceeeccCCccc
Q 032885 102 GKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 102 ~~L~~L~~L~L~~N~l~ 118 (131)
..+++|++|+|++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HTCSSCCEEECTTSSCH
T ss_pred hcCCCcCEEeCCCCCCC
Confidence 34444444444444443
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.01 E-value=0.0095 Score=44.85 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=22.9
Q ss_pred CEEEEecCCCCccee----CchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~----ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
.++.+++++|++++. ++..+.++++|++|++++|.+++
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 456666666666543 55555566666666666666643
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.78 E-value=0.037 Score=40.55 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.5
Q ss_pred CEEEEecCCCCcceeCchh-hcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGRLVPE-LGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~-l~~L~~L~~L~L~~N~l~G 119 (131)
++..+++.+++.-+.||+. +.++++|++|++++|+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 4566777766666778764 6889999999999998886
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.53 E-value=0.014 Score=43.62 Aligned_cols=50 Identities=26% Similarity=0.217 Sum_probs=37.6
Q ss_pred CEEEEecCCCCcce----eCchhhcCCcccceeeccCCcccCC----------CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSG----RLVPELGKLEHLQYLYVNQNLFLFI----------SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G----~ip~~l~~L~~L~~L~L~~N~l~G~----------~~~~l~~L~ls 131 (131)
.++.|++++|.+.. .++..+...+.|++|+|++|.++.. ..++|+.|||+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 57788888888764 3455677788999999999998751 13678888875
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.52 E-value=0.01 Score=46.16 Aligned_cols=37 Identities=24% Similarity=0.076 Sum_probs=20.7
Q ss_pred EEEEecCCCCcce-eCchhhcCCcccceeeccCCcccC
Q 032885 83 VTRLDLGNSNLSG-RLVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 83 v~~l~l~~~~l~G-~ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
++.+++++|++++ .++..+..+++|+.|++++|.+++
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 5556666666554 233344556666666666666543
No 142
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.09 E-value=0.039 Score=35.15 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=28.3
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
.++.|+|++|+++.-=+..+..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4778899999887533345677888999999988664
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.28 E-value=0.043 Score=36.76 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=16.5
Q ss_pred CEEEEecCCCCcce----eCchhhcCCcccceeeccCCccc
Q 032885 82 RVTRLDLGNSNLSG----RLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~~l~G----~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
.++.|++++|++.. .+...+...+.|++|+|++|.++
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34555555555432 12223333344555555555544
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.75 E-value=0.13 Score=32.70 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=31.5
Q ss_pred EEecCCCCcc-eeCchhhcCCcccceeeccCCcccCCC------CCCCceeecC
Q 032885 85 RLDLGNSNLS-GRLVPELGKLEHLQYLYVNQNLFLFIS------FHNMYILNIN 131 (131)
Q Consensus 85 ~l~l~~~~l~-G~ip~~l~~L~~L~~L~L~~N~l~G~~------~~~l~~L~ls 131 (131)
.++-++++|+ ..||..+. .+|++|+|++|+|+..- .++|+.|+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 5677788886 46675433 36899999999998732 3456777764
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.56 E-value=0.024 Score=44.01 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=27.2
Q ss_pred CEEEEecCCCCcceeCchhh-cCCcccceeeccCCcccCC-------CCCCCceeec
Q 032885 82 RVTRLDLGNSNLSGRLVPEL-GKLEHLQYLYVNQNLFLFI-------SFHNMYILNI 130 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l-~~L~~L~~L~L~~N~l~G~-------~~~~l~~L~l 130 (131)
.++.+++++|++++..+..+ ..+++|++|++++|.+++. -.++|+.|+|
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 35556666666555444444 4566666667666666431 1345566655
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.19 E-value=0.073 Score=35.58 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred CEEEEecCCCCccee----CchhhcCCcccceeec--cCCcccCC----------CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLYV--NQNLFLFI----------SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~----ip~~l~~L~~L~~L~L--~~N~l~G~----------~~~~l~~L~ls 131 (131)
.++.|++++|.+... +...+...+.|++|+| ++|.++.. .-++|+.|+|+
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 588999999998743 4566777889999999 78988751 13567888875
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=91.72 E-value=0.063 Score=36.25 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=33.2
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCc-ccC----CC------CCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNL-FLF----IS------FHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~-l~G----~~------~~~l~~L~ls 131 (131)
++++||+++..++-.=-..+.++++|+.|+|+++. ++. .+ .++|+.||||
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC
Confidence 58888888887654323456778888888888874 554 11 2357777764
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.25 E-value=0.069 Score=41.41 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=15.0
Q ss_pred EEEEecCCCCccee----CchhhcCCcccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSGR----LVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G~----ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
++.++++++.+++. ++..+.++++|++|+++.|.++
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 34444444444332 2223334444444444444443
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=90.60 E-value=0.044 Score=42.46 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=35.1
Q ss_pred CEEEEecCCCCcceeCchhhcC-CcccceeeccCCcccCC-------CCCCCceeecC
Q 032885 82 RVTRLDLGNSNLSGRLVPELGK-LEHLQYLYVNQNLFLFI-------SFHNMYILNIN 131 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~-L~~L~~L~L~~N~l~G~-------~~~~l~~L~ls 131 (131)
.++.+++++ ++++..+..++. +++|+.|++++|.+++. -.++|+.|+|+
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 467777766 666655566665 88899999999988762 14778888764
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=88.44 E-value=0.096 Score=39.06 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=7.6
Q ss_pred CcccceeeccCCcccC
Q 032885 104 LEHLQYLYVNQNLFLF 119 (131)
Q Consensus 104 L~~L~~L~L~~N~l~G 119 (131)
+++|++|+|+.|.+++
T Consensus 278 ~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 278 LPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGCSEEECCSSCCBH
T ss_pred CCCCCEEECCCCCCCh
Confidence 4445555555544443
No 151
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.66 E-value=0.53 Score=32.22 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCEEEEecCCCCcce----eCchhhcCCcccceeeccCCcccC----------CCCCCCceeec
Q 032885 81 NRVTRLDLGNSNLSG----RLVPELGKLEHLQYLYVNQNLFLF----------ISFHNMYILNI 130 (131)
Q Consensus 81 ~~v~~l~l~~~~l~G----~ip~~l~~L~~L~~L~L~~N~l~G----------~~~~~l~~L~l 130 (131)
..++.|+|++|.+.. .|-..+..=+.|+.|+|++|.++. .....|+.|+|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 467888888888752 233345555678888888888875 22455666666
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=84.15 E-value=0.26 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=31.6
Q ss_pred CEEEEecCCCCccee----CchhhcCCcccceeeccCCcccC
Q 032885 82 RVTRLDLGNSNLSGR----LVPELGKLEHLQYLYVNQNLFLF 119 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~----ip~~l~~L~~L~~L~L~~N~l~G 119 (131)
+++.|+++.|.+.+. ++..+.++++|+.|+|++|.++.
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 688999999998763 55556778999999999998875
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=78.99 E-value=2.2 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=20.6
Q ss_pred CEEEEecCCCCcceeCch-hhcCCcccceeeccCC
Q 032885 82 RVTRLDLGNSNLSGRLVP-ELGKLEHLQYLYVNQN 115 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~-~l~~L~~L~~L~L~~N 115 (131)
.++.+++++|+++ .||+ .+.++.+|+.|+|.+|
T Consensus 227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT
T ss_pred CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc
Confidence 4667777766665 3333 4666667777776665
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=51.39 E-value=8.3 Score=27.47 Aligned_cols=36 Identities=6% Similarity=0.071 Sum_probs=25.8
Q ss_pred CEEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 82 RVTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 82 ~v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
.++.|+++. ++.--=+..+.+|++|++|++++|.++
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 577788877 665332346888999999999998754
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=27.41 E-value=51 Score=24.39 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=18.5
Q ss_pred EEEEecCCCCcceeCchhhcCCcccceeeccCCccc
Q 032885 83 VTRLDLGNSNLSGRLVPELGKLEHLQYLYVNQNLFL 118 (131)
Q Consensus 83 v~~l~l~~~~l~G~ip~~l~~L~~L~~L~L~~N~l~ 118 (131)
++.+.+++ .+.--=+..+.+|.+|+.+++++|.++
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce
Confidence 44555543 232111234666777777777766544
No 156
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.24 E-value=25 Score=14.81 Aligned_cols=9 Identities=22% Similarity=0.962 Sum_probs=6.9
Q ss_pred CCcccceee
Q 032885 68 NPCTWFHIT 76 (131)
Q Consensus 68 ~~C~w~gv~ 76 (131)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 479998865
Done!