BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032886
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
Subtilis At 1.9a Resolution
pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
Length = 208
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 86 PGNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVEYNPV 131
P V V D + G L+LS +AF +I ++ GK+ +++ V
Sbjct: 61 PKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVV 106
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 33 KPPYSHSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVV 92
KPP+S GN ++++G+ CG + ++C + P C G VVV
Sbjct: 49 KPPFSGMTGCGNT-----------PIFKSGRGCGSCFEIKCTK-----PEACS-GEPVVV 91
Query: 93 KVVDYCRQPCNGI-LNLSQDAFNEIA 117
+ D +P +LS AF +A
Sbjct: 92 HITDDNEEPIAPYHFDLSGHAFGAMA 117
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 34 PPYSHSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVK 93
PPYS GN ++++G+ CG Y VRC P GN V V
Sbjct: 50 PPYSGMTACGNV-----------PIFKDGKGCGSCYEVRCKE------KPECSGNPVTVY 92
Query: 94 VVDYCRQPCNGI-LNLSQDAFNEIA 117
+ D +P +LS AF +A
Sbjct: 93 ITDMNYEPIAPYHFDLSGKAFGSLA 117
>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
Bacillus Subtilis At 2.5 Angstrom
Length = 208
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 86 PGNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVEY 128
P V V D + G L+LS +AF +I + GK+ +++
Sbjct: 61 PKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNXKDGKINIKW 103
>pdb|2HRA|A Chain A, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HRA|B Chain B, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
Length = 209
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 88 NSVVVKVVDYCRQPCNGILNLSQDAFNEIA 117
NS+ +K+VD + P + + ++D FN+I
Sbjct: 49 NSIAIKLVDDKKAPAAKLDDATEDVFNKIT 78
>pdb|2HRK|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSM|A Chain A, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 207
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 88 NSVVVKVVDYCRQPCNGILNLSQDAFNEIA 117
NS+ +K+VD + P + + ++D FN+I
Sbjct: 47 NSIAIKLVDDKKAPAAKLDDATEDVFNKIT 76
>pdb|1OTC|B Chain B, The O. Nova Telomere End Binding Protein Complexed With
Single Strand Dna
pdb|1JB7|B Chain B, Dna G-Quartets In A 1.86 A Resolution Structure Of An
Oxytricha Nova Telomeric Protein-Dna Complex
Length = 260
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 DNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGI 105
DN ++ V+DA + G+ + +G + K GN+ +K+ D Q
Sbjct: 167 DNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFSFKEGNTATLKIADIFVQEK--- 223
Query: 106 LNLSQDAFNEIAD 118
+DA N+ AD
Sbjct: 224 ---GKDALNKAAD 233
>pdb|2I0Q|B Chain B, Crystal Structure Of A Telomere Single-Strand Dna-Protein
Complex From O. Nova With Full-Length Alpha And Beta
Telomere Proteins
Length = 385
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 46 DNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGI 105
DN ++ V+DA + G+ + +G + K GN+ +K+ D Q
Sbjct: 167 DNLVDISKVADAAGKKGKVDAGIVKASASKGDEFSDFSFKEGNTATLKIADIFVQEKG-- 224
Query: 106 LNLSQDAFNEIAD 118
+DA N+ AD
Sbjct: 225 ----KDALNKAAD 233
>pdb|1GFF|1 Chain 1, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 426
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 31 YYKPPYSHSACYGNQDNGP 49
Y+KPP+S Y N N P
Sbjct: 134 YFKPPWSDDLTYANPSNMP 152
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 30 VYYKPPYSHSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRG 76
VY H G+ + P G ++W Q G R + CIRG
Sbjct: 13 VYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRG 59
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Hydroxamic Acid Inhbitor
Length = 413
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 30 VYYKPPYSHSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRG 76
VY H G+ + P G ++W Q G R + CIRG
Sbjct: 13 VYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRG 59
>pdb|3R67|A Chain A, Crystal Structure Of A Putative Glycosidase (Bt_4094) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.30 A
Resolution
pdb|3R67|B Chain B, Crystal Structure Of A Putative Glycosidase (Bt_4094) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.30 A
Resolution
pdb|3R67|C Chain C, Crystal Structure Of A Putative Glycosidase (Bt_4094) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.30 A
Resolution
pdb|3R67|D Chain D, Crystal Structure Of A Putative Glycosidase (Bt_4094) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.30 A
Resolution
Length = 356
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 79 QAPHPCKPGNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVEY 128
Q P P S V YC + + S D FN A + GKV+V Y
Sbjct: 18 QRPEGINPIVSPDTTTVFYCPXRQDSVAWESSDTFNPAATIYDGKVVVLY 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,300
Number of Sequences: 62578
Number of extensions: 157534
Number of successful extensions: 267
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 16
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)