Query 032886
Match_columns 131
No_of_seqs 138 out of 1109
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 1.3E-37 2.9E-42 220.8 13.7 121 7-130 5-125 (125)
2 PLN00193 expansin-A; Provision 100.0 3E-31 6.5E-36 207.5 14.0 109 21-131 27-156 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 9.7E-31 2.1E-35 203.7 12.4 103 21-131 22-139 (247)
4 PLN00050 expansin A; Provision 100.0 1.1E-30 2.4E-35 203.5 10.9 105 22-131 23-148 (247)
5 smart00837 DPBB_1 Rare lipopro 99.9 1.4E-24 3E-29 145.5 7.2 74 51-128 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.9 2.3E-23 5E-28 136.3 7.5 76 51-128 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.5 2.9E-13 6.3E-18 100.8 10.4 119 1-131 1-130 (232)
8 TIGR00413 rlpA rare lipoprotei 99.3 3.2E-11 6.9E-16 91.8 10.8 87 27-130 1-90 (208)
9 COG0797 RlpA Lipoproteins [Cel 99.3 4.2E-11 9E-16 92.6 10.3 93 23-131 81-175 (233)
10 PF00967 Barwin: Barwin family 99.2 1.8E-11 3.9E-16 85.2 3.5 57 62-131 57-117 (119)
11 PRK10672 rare lipoprotein A; P 99.1 1.8E-09 4E-14 88.2 11.7 90 25-130 79-170 (361)
12 PF07249 Cerato-platanin: Cera 98.9 1.5E-08 3.3E-13 71.4 9.0 67 48-131 42-112 (119)
13 PF02015 Glyco_hydro_45: Glyco 95.1 0.035 7.6E-07 42.4 4.3 41 63-111 82-123 (201)
14 PF15240 Pro-rich: Proline-ric 75.6 1.8 3.9E-05 32.6 1.6 16 5-20 1-16 (179)
15 COG5216 Uncharacterized conser 64.8 3.1 6.7E-05 26.0 0.7 28 62-103 24-51 (67)
16 PF04202 Mfp-3: Foot protein 3 58.4 13 0.00028 23.6 2.7 25 9-37 9-33 (71)
17 PF07172 GRP: Glycine rich pro 57.2 9.8 0.00021 25.7 2.2 20 1-20 1-21 (95)
18 PRK15205 long polar fimbrial p 50.4 18 0.00038 26.5 2.8 41 1-42 1-44 (176)
19 PRK15289 lpfA fimbrial protein 48.9 22 0.00048 26.3 3.2 20 22-42 21-40 (190)
20 PRK15307 major fimbrial protei 47.7 24 0.00052 26.5 3.2 40 1-41 1-42 (201)
21 PRK08061 rpsN 30S ribosomal pr 47.0 14 0.0003 23.0 1.5 37 91-128 17-61 (61)
22 PRK15300 fimbrial protein StiA 45.2 19 0.00041 26.4 2.3 40 1-41 1-42 (179)
23 PF15284 PAGK: Phage-encoded v 45.1 22 0.00048 22.2 2.2 20 1-20 1-22 (61)
24 TIGR02645 ARCH_P_rylase putati 43.8 94 0.002 27.1 6.6 54 62-127 26-79 (493)
25 KOG2923 Uncharacterized conser 43.3 9.9 0.00021 24.0 0.4 37 64-114 26-64 (67)
26 PRK15209 long polar fimbrial p 41.4 32 0.0007 24.9 3.0 20 22-42 21-40 (174)
27 PRK15239 putative fimbrial pro 40.4 28 0.0006 26.2 2.6 20 22-42 20-39 (197)
28 PRK15241 putative fimbrial pro 37.7 44 0.00095 25.2 3.3 39 1-41 1-39 (188)
29 PF11912 DUF3430: Protein of u 37.6 39 0.00085 25.0 3.0 18 1-18 1-18 (212)
30 TIGR01165 cbiN cobalt transpor 31.9 45 0.00099 22.4 2.3 13 1-13 1-13 (91)
31 PF03058 Sar8_2: Sar8.2 family 31.7 27 0.00058 23.6 1.1 24 1-24 1-26 (93)
32 PRK15187 fimbrial protein BcfA 30.2 64 0.0014 23.7 3.1 53 1-54 1-58 (180)
33 PRK09733 putative fimbrial pro 30.0 60 0.0013 23.7 2.9 20 22-42 21-40 (181)
34 PRK15194 type-1 fimbrial prote 29.2 74 0.0016 23.3 3.3 17 25-42 31-47 (185)
35 COG0199 RpsN Ribosomal protein 29.1 32 0.00069 21.4 1.1 40 88-128 14-61 (61)
36 PRK06911 rpsN 30S ribosomal pr 28.7 37 0.00079 23.1 1.4 42 86-128 51-100 (100)
37 PF13719 zinc_ribbon_5: zinc-r 26.7 54 0.0012 17.9 1.7 16 97-113 4-19 (37)
38 PRK12750 cpxP periplasmic repr 26.4 53 0.0012 24.3 2.1 28 1-28 1-29 (170)
39 PF13956 Ibs_toxin: Toxin Ibs, 25.9 45 0.00097 15.9 1.0 6 15-20 11-16 (19)
40 CHL00074 rps14 ribosomal prote 24.7 27 0.00058 23.8 0.2 42 86-128 51-100 (100)
41 PF00879 Defensin_propep: Defe 24.4 74 0.0016 19.2 2.0 16 3-18 1-16 (52)
42 PF06873 SerH: Cell surface im 24.2 61 0.0013 27.5 2.3 18 1-18 1-18 (403)
43 PF14369 zf-RING_3: zinc-finge 23.4 75 0.0016 17.3 1.8 9 97-106 23-31 (35)
44 PF10913 DUF2706: Protein of u 23.2 1E+02 0.0022 18.8 2.5 20 1-20 1-20 (60)
45 KOG4063 Major epididymal secre 23.1 86 0.0019 23.2 2.6 13 118-130 127-139 (158)
46 KOG1690 emp24/gp25L/p24 family 23.0 2.3E+02 0.005 21.9 5.0 33 29-61 20-54 (215)
47 PRK14758 hypothetical protein; 22.6 1.1E+02 0.0024 15.8 2.2 17 3-19 5-21 (27)
48 TIGR03327 AMP_phos AMP phospho 22.6 3.5E+02 0.0075 23.7 6.5 52 62-126 27-79 (500)
49 PHA03298 envelope glycoprotein 22.4 1.9E+02 0.0041 21.0 4.1 20 1-20 1-20 (167)
50 PRK11657 dsbG disulfide isomer 22.3 1.5E+02 0.0033 23.0 4.0 36 87-130 117-154 (251)
51 PRK15262 putative fimbrial pro 22.1 92 0.002 23.4 2.7 19 22-41 23-41 (197)
52 PRK08881 rpsN 30S ribosomal pr 21.8 35 0.00076 23.2 0.3 42 86-128 52-101 (101)
53 PRK15306 putative fimbrial pro 21.8 64 0.0014 24.1 1.8 41 1-42 1-44 (190)
54 PRK11367 hypothetical protein; 21.6 47 0.001 28.7 1.1 24 1-27 2-25 (476)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=100.00 E-value=1.3e-37 Score=220.75 Aligned_cols=121 Identities=41% Similarity=0.825 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhcccceeeEEEEEECCCCCCCCCCCCCCCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCC
Q 032886 7 IFMMISIVLCLCSAAVHAAQGNAVYYKPPYSHSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKP 86 (131)
Q Consensus 7 ~~~~~~~~~~l~s~~~~~~~G~aT~Y~~~~~~gaC~~~~~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~ 86 (131)
++|++-++.+|+|+ +...+|+||||++ ++++|||++.+++.++||+|+.+|++|+.||+||||+|.+.....+++|+
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~G~AT~Y~~-~~~gAC~~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~- 81 (125)
T PLN03024 5 ILIFSTVLVFLFSV-SYATPGIATFYTS-YTPSACYRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT- 81 (125)
T ss_pred eHHHHHHHHHHhhh-hcccceEEEEeCC-CCCccccCCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-
Confidence 44555557788888 9999999999997 57899988888899999999999999999999999999764333456898
Q ss_pred CCeEEEEEEeccCCCCCCcEEcCHHHHHhhcCCCCcEEEEEEEE
Q 032886 87 GNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVEYNP 130 (131)
Q Consensus 87 g~~v~v~V~D~Cp~~C~~~lDLS~~aF~~la~~~~G~v~v~w~~ 130 (131)
+++|+|+|+|+||.+|+.|||||++||++||+++.|+|+|+|.+
T Consensus 82 gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 82 GKSVTVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 89999999999995589999999999999999999999999974
No 2
>PLN00193 expansin-A; Provisional
Probab=99.97 E-value=3e-31 Score=207.50 Aligned_cols=109 Identities=28% Similarity=0.568 Sum_probs=94.7
Q ss_pred ccceeeEEEEEECCCCC----CCCC-CCCC---CCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEE
Q 032886 21 AVHAAQGNAVYYKPPYS----HSAC-YGNQ---DNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVV 92 (131)
Q Consensus 21 ~~~~~~G~aT~Y~~~~~----~gaC-~~~~---~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v 92 (131)
.++|.+++||||+.+++ +||| |++. +++.++||+|+.+|++|..||+||||+|... ..++.|.+|++|+|
T Consensus 27 ~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~--~~~~~C~~g~sV~V 104 (256)
T PLN00193 27 PSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQ--ADSRWCIKGASVTI 104 (256)
T ss_pred CCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCC--CCCccccCCCeEEE
Confidence 45799999999997643 6999 8865 4688999999999999999999999999531 13668976789999
Q ss_pred EEEeccCCC----------CC---CcEEcCHHHHHhhcCCCCcEEEEEEEEC
Q 032886 93 KVVDYCRQP----------CN---GILNLSQDAFNEIADLDAGKVIVEYNPV 131 (131)
Q Consensus 93 ~V~D~Cp~~----------C~---~~lDLS~~aF~~la~~~~G~v~v~w~~V 131 (131)
+|||+||.. |. .|||||..||.+||....|+|+|+||||
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRV 156 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRV 156 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEe
Confidence 999999941 85 7999999999999999999999999997
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=99.97 E-value=9.7e-31 Score=203.73 Aligned_cols=103 Identities=38% Similarity=0.625 Sum_probs=92.4
Q ss_pred ccceeeEEEEEECCCC----CCCCC-CCCC---CCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEE
Q 032886 21 AVHAAQGNAVYYKPPY----SHSAC-YGNQ---DNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVV 92 (131)
Q Consensus 21 ~~~~~~G~aT~Y~~~~----~~gaC-~~~~---~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v 92 (131)
.++|.+++||||++++ .+||| |++. .++..+||+| .+|++|..||+||||+|.+ ++.|. +++|+|
T Consensus 22 ~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-----~~~C~-~~~v~V 94 (247)
T PLN03023 22 SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-----PNLCS-DDGVNV 94 (247)
T ss_pred cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-----CCccC-CCCeEE
Confidence 4789999999999987 37899 8876 3578899998 9999999999999999964 66898 679999
Q ss_pred EEEeccCCCCCCcEEcCHHHHHhhcCC-------CCcEEEEEEEEC
Q 032886 93 KVVDYCRQPCNGILNLSQDAFNEIADL-------DAGKVIVEYNPV 131 (131)
Q Consensus 93 ~V~D~Cp~~C~~~lDLS~~aF~~la~~-------~~G~v~v~w~~V 131 (131)
+|||.|| ++..|||||..||.+||.+ ..|+|+|+||||
T Consensus 95 ~iTd~~~-~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRV 139 (247)
T PLN03023 95 VVTDYGE-GDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRI 139 (247)
T ss_pred EEEeCCC-CCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEE
Confidence 9999999 7789999999999999984 569999999997
No 4
>PLN00050 expansin A; Provisional
Probab=99.97 E-value=1.1e-30 Score=203.48 Aligned_cols=105 Identities=31% Similarity=0.615 Sum_probs=93.4
Q ss_pred cceeeEEEEEECCCCC----CCCC-CCCC---CCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEE
Q 032886 22 VHAAQGNAVYYKPPYS----HSAC-YGNQ---DNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVK 93 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~----~gaC-~~~~---~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~ 93 (131)
.+|..++||||+.+++ +||| |++. +.+.++||+|+.+|++|..||+||||+|.+. +..|. +++|+|+
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~----~~~C~-~gsV~V~ 97 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND----NIWCL-PGSIIIT 97 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC----CcccC-CCcEEEE
Confidence 6899999999998754 6999 8875 4688999999999999999999999999652 45787 5699999
Q ss_pred EEeccCC----------CCC---CcEEcCHHHHHhhcCCCCcEEEEEEEEC
Q 032886 94 VVDYCRQ----------PCN---GILNLSQDAFNEIADLDAGKVIVEYNPV 131 (131)
Q Consensus 94 V~D~Cp~----------~C~---~~lDLS~~aF~~la~~~~G~v~v~w~~V 131 (131)
|||+||+ .|. .|||||+.||.+||....|+|+|+||||
T Consensus 98 itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRV 148 (247)
T PLN00050 98 ATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRV 148 (247)
T ss_pred EecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEe
Confidence 9999994 184 9999999999999999999999999997
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.91 E-value=1.4e-24 Score=145.51 Aligned_cols=74 Identities=42% Similarity=0.852 Sum_probs=66.2
Q ss_pred EEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCC----------CC---CcEEcCHHHHHhhc
Q 032886 51 VTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQP----------CN---GILNLSQDAFNEIA 117 (131)
Q Consensus 51 ~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~----------C~---~~lDLS~~aF~~la 117 (131)
+||+|+.+|++|+.||+||||+|.+ .|+.|.++++|+|+|||+||.. |. .|||||+.||.+||
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~----~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA 76 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD----SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA 76 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC----CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh
Confidence 4899999999999999999999964 3667876679999999999942 64 89999999999999
Q ss_pred CCCCcEEEEEE
Q 032886 118 DLDAGKVIVEY 128 (131)
Q Consensus 118 ~~~~G~v~v~w 128 (131)
.++.|+|+|+|
T Consensus 77 ~~~~Gvi~v~y 87 (87)
T smart00837 77 QYKAGIVPVKY 87 (87)
T ss_pred hhcCCEEeeEC
Confidence 99999999997
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.89 E-value=2.3e-23 Score=136.33 Aligned_cols=76 Identities=43% Similarity=0.759 Sum_probs=61.0
Q ss_pred EEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCC-CeEEEEEEeccCCCCC-CcEEcCHHHHHhhcCCCCcEEEEEE
Q 032886 51 VTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPG-NSVVVKVVDYCRQPCN-GILNLSQDAFNEIADLDAGKVIVEY 128 (131)
Q Consensus 51 ~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g-~~v~v~V~D~Cp~~C~-~~lDLS~~aF~~la~~~~G~v~v~w 128 (131)
+||++..+|++|..||+|+++++.......+ .|..+ |+|+|+|+|+|| +|. +|||||+.||++|++++.|+++|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~-~~~~~~ksV~v~V~D~Cp-~~~~~~lDLS~~aF~~la~~~~G~i~V~w 78 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATG-TCKVGNKSVTVTVVDRCP-GCPPNHLDLSPAAFKALADPDAGVIPVEW 78 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT---BESEECEEEEEEEEE-T-TSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccc-eEEecCCeEEEEEEccCC-CCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence 6899999999999999999999954432111 16622 999999999999 899 9999999999999999999999999
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-13 Score=100.78 Aligned_cols=119 Identities=25% Similarity=0.379 Sum_probs=93.4
Q ss_pred CchhHHHHHHHHHHHHHhhc---ccce---eeEEEEEECCCCCCCCC-CCCCCCCceEEEeccccccCC----cCCCCeE
Q 032886 1 MGIEMRIFMMISIVLCLCSA---AVHA---AQGNAVYYKPPYSHSAC-YGNQDNGPMVTGVSDALWRNG----QACGKRY 69 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~---~~~~---~~G~aT~Y~~~~~~gaC-~~~~~~~~~~aA~s~~~~~~g----~~CG~c~ 69 (131)
|+..++.+.--+++--.+.+ .+.| +.|.|||-+..+.+||= ..+.+.+..+.|++..+.+-| +.-|..+
T Consensus 1 ~~~~~s~~~g~v~~~~~~~s~q~s~awd~~f~G~ATyTgsGYsGGAflLDPI~sd~eITAlNPaqlNlGGipAAmAGaYL 80 (232)
T COG4305 1 MKKIMSAFVGMVLLTIFCFSPQASAAWDDLFEGYATYTGSGYSGGAFLLDPIPSDMEITALNPAQLNLGGIPAAMAGAYL 80 (232)
T ss_pred CccHHHHHHHHhhhhhhccCCCcccccccccceeEEEecccccCceEEecCcCCcceeeecCHHHcccCCchhhhccceE
Confidence 56666666544443333322 2234 67999998888888888 677788889999998887754 5689999
Q ss_pred EEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCCCcEEcCHHHHHhhcCCCCcEEEEEEEEC
Q 032886 70 RVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVEYNPV 131 (131)
Q Consensus 70 ~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~~~lDLS~~aF~~la~~~~G~v~v~w~~V 131 (131)
||.. |..+.+|.|+|+-|++-.+.||||+.||.+|++..+|+|+|+||-|
T Consensus 81 rVqG------------PKG~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qGrIpvqWrvv 130 (232)
T COG4305 81 RVQG------------PKGKTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQGRIPVQWRVV 130 (232)
T ss_pred EEEC------------CCCceEEEEecccccccccccccChHHHhhhcchhcCccceeEEEe
Confidence 9986 4677899999999944449999999999999999999999999975
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.30 E-value=3.2e-11 Score=91.84 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=72.6
Q ss_pred EEEEEECCCCC--CCCCCCCCCCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCC-
Q 032886 27 GNAVYYKPPYS--HSACYGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCN- 103 (131)
Q Consensus 27 G~aT~Y~~~~~--~gaC~~~~~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~- 103 (131)
|.|+||++... ..|.+.......++||+.+- +.|..++|++.. + |++|+|+|+|++| -=+
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y~~~~~tAAHktL------PlgT~V~VtNl~---------n-grsviVrVnDRGP-f~~g 63 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVYNMKALTAAHKTL------PFNTYVKVTNLH---------N-NRSVIVRINDRGP-FSDD 63 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeecCCCccccccccC------CCCCEEEEEECC---------C-CCEEEEEEeCCCC-CCCC
Confidence 68999998654 45555556778899998743 689999999875 5 8999999999999 444
Q ss_pred CcEEcCHHHHHhhcCCCCcEEEEEEEE
Q 032886 104 GILNLSQDAFNEIADLDAGKVIVEYNP 130 (131)
Q Consensus 104 ~~lDLS~~aF~~la~~~~G~v~v~w~~ 130 (131)
..||||+.|+++|+-.+.|+.+|+.+.
T Consensus 64 RiIDLS~aAA~~Lg~~~~G~a~V~vev 90 (208)
T TIGR00413 64 RIIDLSHAAAREIGLISRGVGQVRIEV 90 (208)
T ss_pred CEEECCHHHHHHcCCCcCceEEEEEEE
Confidence 899999999999999999998888765
No 9
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=4.2e-11 Score=92.59 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=74.5
Q ss_pred ceeeEEEEEECCCCCCCCC-CCC-CCCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCC
Q 032886 23 HAAQGNAVYYKPPYSHSAC-YGN-QDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQ 100 (131)
Q Consensus 23 ~~~~G~aT~Y~~~~~~gaC-~~~-~~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~ 100 (131)
....|.|+|||...++.-- .|+ .+...++||+.+- .-|..++||+.+ | |++|+|+|.|++|.
T Consensus 81 ~~~~G~ASwYg~~fhgr~TA~Ge~~n~~~~tAAH~TL------P~~t~v~VtNl~---------N-grsvvVRINDRGPf 144 (233)
T COG0797 81 FEQVGYASWYGEKFHGRKTANGERYDMNALTAAHKTL------PLPTYVRVTNLD---------N-GRSVVVRINDRGPF 144 (233)
T ss_pred ccccceeeeeccccCCccccCcccccccccccccccC------CCCCEEEEEEcc---------C-CcEEEEEEeCCCCC
Confidence 3467999999976654444 343 4678999999854 458999999987 6 99999999999994
Q ss_pred CCCCcEEcCHHHHHhhcCCCCcEEEEEEEEC
Q 032886 101 PCNGILNLSQDAFNEIADLDAGKVIVEYNPV 131 (131)
Q Consensus 101 ~C~~~lDLS~~aF~~la~~~~G~v~v~w~~V 131 (131)
.=+..||||..|+++|+....|+.+|+.+++
T Consensus 145 ~~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l 175 (233)
T COG0797 145 VSGRIIDLSKAAADKLGMIRSGVAKVRIEVL 175 (233)
T ss_pred CCCcEeEcCHHHHHHhCCccCceEEEEEEEe
Confidence 3338899999999999999999888777653
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.18 E-value=1.8e-11 Score=85.15 Aligned_cols=57 Identities=39% Similarity=0.693 Sum_probs=43.1
Q ss_pred CcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCCCcEEcCHHHHHhhcC----CCCcEEEEEEEEC
Q 032886 62 GQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGILNLSQDAFNEIAD----LDAGKVIVEYNPV 131 (131)
Q Consensus 62 g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~~~lDLS~~aF~~la~----~~~G~v~v~w~~V 131 (131)
...||+|++||++. + |.+++|+|||+|+. ++|||.+.+|++|-. ...|.+.|+|++|
T Consensus 57 q~~CGkClrVTNt~---------t-ga~~~~RIVDqCsn---GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV 117 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA---------T-GAQVTVRIVDQCSN---GGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFV 117 (119)
T ss_dssp GGGTT-EEEEE-TT---------T---EEEEEEEEE-SS---SSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE
T ss_pred cccccceEEEEecC---------C-CcEEEEEEEEcCCC---CCcccChhHHhhhccCCcccccceEEEEEEEE
Confidence 35899999999864 4 89999999999994 689999999999953 2469999999987
No 11
>PRK10672 rare lipoprotein A; Provisional
Probab=99.08 E-value=1.8e-09 Score=88.25 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=72.5
Q ss_pred eeEEEEEECCCCCCCCC--CCCCCCCceEEEeccccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCC
Q 032886 25 AQGNAVYYKPPYSHSAC--YGNQDNGPMVTGVSDALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPC 102 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC--~~~~~~~~~~aA~s~~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C 102 (131)
..|.|+|||....+..- +..++...++||+.+- ..|..++||+.+ | ||+|+|+|+|++|..=
T Consensus 79 ~~G~ASwYg~~f~G~~TA~Ge~~~~~~~tAAH~tL------Plps~vrVtNl~---------n-grsvvVrVnDRGP~~~ 142 (361)
T PRK10672 79 QAGLAAIYDAEAGSNLTASGERFDPNALTAAHPTL------PIPSYVRVTNLA---------N-GRMIVVRINDRGPYGP 142 (361)
T ss_pred eEEEEEEeCCccCCCcCcCceeecCCcCeeeccCC------CCCCEEEEEECC---------C-CcEEEEEEeCCCCCCC
Confidence 37999999997654433 4445778999998753 579999999976 5 9999999999999432
Q ss_pred CCcEEcCHHHHHhhcCCCCcEEEEEEEE
Q 032886 103 NGILNLSQDAFNEIADLDAGKVIVEYNP 130 (131)
Q Consensus 103 ~~~lDLS~~aF~~la~~~~G~v~v~w~~ 130 (131)
+.-||||..|+++|+-...++|.|+.-.
T Consensus 143 gRiiDLS~aAA~~Lg~~~~~~V~ve~i~ 170 (361)
T PRK10672 143 GRVIDLSRAAADRLNTSNNTKVRIDPII 170 (361)
T ss_pred CCeeEcCHHHHHHhCCCCCceEEEEEEe
Confidence 3899999999999998777888887643
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.89 E-value=1.5e-08 Score=71.40 Aligned_cols=67 Identities=30% Similarity=0.605 Sum_probs=50.6
Q ss_pred CceEEEecc-ccccCCcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCCCcEEcCHHHHHhhcC---CCCcE
Q 032886 48 GPMVTGVSD-ALWRNGQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGILNLSQDAFNEIAD---LDAGK 123 (131)
Q Consensus 48 ~~~~aA~s~-~~~~~g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~~~lDLS~~aF~~la~---~~~G~ 123 (131)
-..+.+.+. .-|+ .+.||.|+|++. + |++|.+..+|.-+ ..|++|.+||++|++ .+.|+
T Consensus 42 Fp~IGg~~~V~gWn-S~~CGtC~~lty-----------~-g~si~vlaID~a~----~gfnis~~A~n~LT~g~a~~lG~ 104 (119)
T PF07249_consen 42 FPYIGGAPAVAGWN-SPNCGTCWKLTY-----------N-GRSIYVLAIDHAG----GGFNISLDAMNDLTNGQAVELGR 104 (119)
T ss_dssp TTSEEEETT--STT--TTTT-EEEEEE-----------T-TEEEEEEEEEE-S----SSEEE-HHHHHHHHTS-CCCC-E
T ss_pred CCeeccccccccCC-CCCCCCeEEEEE-----------C-CeEEEEEEEecCC----CcccchHHHHHHhcCCcccceeE
Confidence 345666654 3574 578999999998 4 8999999999988 789999999999986 46899
Q ss_pred EEEEEEEC
Q 032886 124 VIVEYNPV 131 (131)
Q Consensus 124 v~v~w~~V 131 (131)
|+++|++|
T Consensus 105 V~a~~~qV 112 (119)
T PF07249_consen 105 VDATYTQV 112 (119)
T ss_dssp EE-EEEEE
T ss_pred EEEEEEEc
Confidence 99999986
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=95.13 E-value=0.035 Score=42.45 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=28.2
Q ss_pred cCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCC-CcEEcCHH
Q 032886 63 QACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCN-GILNLSQD 111 (131)
Q Consensus 63 ~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~-~~lDLS~~ 111 (131)
..|++||+++-++.. - .||+.+|+|++.-- .=. +||||.-+
T Consensus 82 ~~Cc~Cy~LtFt~g~------l-~GKkmiVQ~tNtG~-dlg~n~FDl~iP 123 (201)
T PF02015_consen 82 SWCCACYELTFTSGP------L-KGKKMIVQVTNTGG-DLGSNQFDLAIP 123 (201)
T ss_dssp HHTT-EEEEEE-SST------T-TT-EEEEEEEEE-T-TTTTTEEEEE-T
T ss_pred CcccceEEEEEcCCC------c-CCCEeEEEecccCC-CCCCCeEEEEeC
Confidence 579999999998642 1 39999999999886 333 99999743
No 14
>PF15240 Pro-rich: Proline-rich
Probab=75.60 E-value=1.8 Score=32.62 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 032886 5 MRIFMMISIVLCLCSA 20 (131)
Q Consensus 5 ~~~~~~~~~~~~l~s~ 20 (131)
|+|+|+.+.||+|.||
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 6788888888888877
No 15
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=3.1 Score=26.00 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=19.6
Q ss_pred CcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCC
Q 032886 62 GQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCN 103 (131)
Q Consensus 62 g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~ 103 (131)
--+||..++|.-.+-. + |. ++-+|| +|.
T Consensus 24 PCPCGDRFeIsLeDl~-------~-GE-----~VArCP-SCS 51 (67)
T COG5216 24 PCPCGDRFEISLEDLR-------N-GE-----VVARCP-SCS 51 (67)
T ss_pred cCCCCCEeEEEHHHhh-------C-Cc-----eEEEcC-Cce
Confidence 3479999999865421 2 33 667899 888
No 16
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=58.40 E-value=13 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.479 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhcccceeeEEEEEECCCCC
Q 032886 9 MMISIVLCLCSAAVHAAQGNAVYYKPPYS 37 (131)
Q Consensus 9 ~~~~~~~~l~s~~~~~~~G~aT~Y~~~~~ 37 (131)
|+.++|..++..+++. +-+|++.++
T Consensus 9 LlaLvLIg~fAVqSda----g~~y~p~y~ 33 (71)
T PF04202_consen 9 LLALVLIGSFAVQSDA----GYYYYPGYN 33 (71)
T ss_pred HHHHHHHhhheeeecC----ccccCCCCC
Confidence 3444445555553443 345666554
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.17 E-value=9.8 Score=25.67 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=9.1
Q ss_pred CchhHHHHHHHHH-HHHHhhc
Q 032886 1 MGIEMRIFMMISI-VLCLCSA 20 (131)
Q Consensus 1 m~~~~~~~~~~~~-~~~l~s~ 20 (131)
|+=+..|+|.++| +++|+|+
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 6644444443333 3444554
No 18
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=50.36 E-value=18 Score=26.51 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHHHHHHhhccc---ceeeEEEEEECCCCCCCCCC
Q 032886 1 MGIEMRIFMMISIVLCLCSAAV---HAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~~~---~~~~G~aT~Y~~~~~~gaC~ 42 (131)
|+|+..++.+.++++.+...++ ....|+++|.|.- -...|-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~I-~~~tC~ 44 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITI-KAKACE 44 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEEE-Eeccce
Confidence 7777755544444332332222 2356999998885 367893
No 19
>PRK15289 lpfA fimbrial protein; Provisional
Probab=48.86 E-value=22 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=14.6
Q ss_pred cceeeEEEEEECCCCCCCCCC
Q 032886 22 VHAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~~gaC~ 42 (131)
+...+|+.+|.|.- -..+|-
T Consensus 21 a~a~~G~I~f~G~I-~~~tC~ 40 (190)
T PRK15289 21 ALAEDGVVHFVGEI-VDTTCE 40 (190)
T ss_pred ccccCCEEEEEEEE-ecceeE
Confidence 44568999998885 367893
No 20
>PRK15307 major fimbrial protein StkA; Provisional
Probab=47.68 E-value=24 Score=26.51 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHHHHHhhc--ccceeeEEEEEECCCCCCCCC
Q 032886 1 MGIEMRIFMMISIVLCLCSA--AVHAAQGNAVYYKPPYSHSAC 41 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~--~~~~~~G~aT~Y~~~~~~gaC 41 (131)
|+|+..++..++++++.++. +++...|+.+|.|.- -...|
T Consensus 1 m~~~~~~l~~~~~~~~~~~~~~aa~~~~g~I~F~G~I-~~~tC 42 (201)
T PRK15307 1 MFLKKYGLAAAVAMTLSASSAMAADPDTGTITFHGLV-TNNTC 42 (201)
T ss_pred CchHHHHHHHHHHHHHhhhhhhcccCCCCEEEEEEEE-eccce
Confidence 77776555444443332222 233347999998885 46788
No 21
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=46.98 E-value=14 Score=23.04 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEEEeccCCCCC------CcEEcCHHHHHhhcC--CCCcEEEEEE
Q 032886 91 VVKVVDYCRQPCN------GILNLSQDAFNEIAD--LDAGKVIVEY 128 (131)
Q Consensus 91 ~v~V~D~Cp~~C~------~~lDLS~~aF~~la~--~~~G~v~v~w 128 (131)
.+.+.++|. -|+ ..+.||.-.|.++|. .-.|+..-+|
T Consensus 17 ~~r~~nRC~-~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCE-RCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred Ccccceeee-cCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 367889998 776 678899999999985 4478877776
No 22
>PRK15300 fimbrial protein StiA; Provisional
Probab=45.17 E-value=19 Score=26.38 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHHHHhhc--ccceeeEEEEEECCCCCCCCC
Q 032886 1 MGIEMRIFMMISIVLCLCSA--AVHAAQGNAVYYKPPYSHSAC 41 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~--~~~~~~G~aT~Y~~~~~~gaC 41 (131)
||+++..+++.+.++.+..+ +....+|+.+|.|.- -...|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~f~G~I-~~~tC 42 (179)
T PRK15300 1 MKLSLKTLTVALAAITLSPAALADTAKDGTVHITGLI-KQNAC 42 (179)
T ss_pred CceeehhHHHHHHHHHhCchhhhcccCCCEEEEEEEE-Ecccc
Confidence 77775443333332222211 123358999998885 36789
No 23
>PF15284 PAGK: Phage-encoded virulence factor
Probab=45.07 E-value=22 Score=22.18 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=9.8
Q ss_pred CchhHHHH--HHHHHHHHHhhc
Q 032886 1 MGIEMRIF--MMISIVLCLCSA 20 (131)
Q Consensus 1 m~~~~~~~--~~~~~~~~l~s~ 20 (131)
||+-.+++ +++++...++|+
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSA 22 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhH
Confidence 77444444 444444445555
No 24
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=43.84 E-value=94 Score=27.08 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=37.4
Q ss_pred CcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCCCcEEcCHHHHHhhcCCCCcEEEEE
Q 032886 62 GQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCNGILNLSQDAFNEIADLDAGKVIVE 127 (131)
Q Consensus 62 g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~~~lDLS~~aF~~la~~~~G~v~v~ 127 (131)
|-.=+..++|+. + ++++++.|++.=.--=++.+-||..+|++|.-.+.-.+.|.
T Consensus 26 g~~~~~rv~v~~-----------~-~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v~ 79 (493)
T TIGR02645 26 GFTPQDRVEVRI-----------G-GKSLIAILVGSDTLVEMGEIGLSVSAVETFMAREGDIVTVT 79 (493)
T ss_pred CCCcCCeEEEEe-----------C-CEEEEEEEecccccccCCeeeccHHHHHHcCCCCCCEEEEe
Confidence 445578999986 4 78999988863210112889999999999965544445553
No 25
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.28 E-value=9.9 Score=24.05 Aligned_cols=37 Identities=22% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCCC--CcEEcCHHHHH
Q 032886 64 ACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPCN--GILNLSQDAFN 114 (131)
Q Consensus 64 ~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C~--~~lDLS~~aF~ 114 (131)
+||..++|+-.+=. + |. .+-+|| +|. -.++--+.-|.
T Consensus 26 pCGDrf~It~edL~-------~-ge-----~Va~Cp-sCSL~I~ViYd~edf~ 64 (67)
T KOG2923|consen 26 PCGDRFQITLEDLE-------N-GE-----DVARCP-SCSLIIRVIYDKEDFA 64 (67)
T ss_pred CCCCeeeecHHHHh-------C-CC-----eeecCC-CceEEEEEEeCHHHhh
Confidence 69999999854311 2 44 345799 898 44555555443
No 26
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=41.45 E-value=32 Score=24.93 Aligned_cols=20 Identities=10% Similarity=0.312 Sum_probs=14.5
Q ss_pred cceeeEEEEEECCCCCCCCCC
Q 032886 22 VHAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~~gaC~ 42 (131)
++..+|+.+|.|.-. ..+|-
T Consensus 21 a~~~~g~I~f~G~I~-~~tC~ 40 (174)
T PRK15209 21 AESGDGTVKFTGEIV-DAPCV 40 (174)
T ss_pred cccCCcEEEEEEEEE-cCcce
Confidence 444579999988853 67993
No 27
>PRK15239 putative fimbrial protein StaA; Provisional
Probab=40.43 E-value=28 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=15.1
Q ss_pred cceeeEEEEEECCCCCCCCCC
Q 032886 22 VHAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~~gaC~ 42 (131)
..+..|+++|.|.- -...|-
T Consensus 20 ~a~~~GtI~F~G~I-~d~tC~ 39 (197)
T PRK15239 20 MAVEGGRINFEGLV-SAETCK 39 (197)
T ss_pred hhccCCEEEEEEEE-eeceee
Confidence 44568999999885 377884
No 28
>PRK15241 putative fimbrial protein StaD; Provisional
Probab=37.71 E-value=44 Score=25.16 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=22.9
Q ss_pred CchhHHHHHHHHHHHHHhhcccceeeEEEEEECCCCCCCCC
Q 032886 1 MGIEMRIFMMISIVLCLCSAAVHAAQGNAVYYKPPYSHSAC 41 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~~~~~~~G~aT~Y~~~~~~gaC 41 (131)
|.+...+++.+++ .++++..+....+..+|.|.- -...|
T Consensus 1 M~~~k~~~~~~~~-~~~~~~~~~a~~~~V~f~G~v-va~~C 39 (188)
T PRK15241 1 MKRNKYLLAASVL-AMIFPLTSQAEDINVDFTATV-LATTC 39 (188)
T ss_pred CcchHHHHHHHHH-HHHhhhhhhccceEEEEEEEE-EecCc
Confidence 6554444444443 444444356678999998773 36788
No 29
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=37.64 E-value=39 Score=24.99 Aligned_cols=18 Identities=11% Similarity=0.479 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHHHHHHh
Q 032886 1 MGIEMRIFMMISIVLCLC 18 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~ 18 (131)
||+.+.|+|+++++..+.
T Consensus 1 MKll~~lilli~~~~~~~ 18 (212)
T PF11912_consen 1 MKLLISLILLILLIINFS 18 (212)
T ss_pred CcHHHHHHHHHHHHHhhh
Confidence 666555555544444443
No 30
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=31.88 E-value=45 Score=22.44 Aligned_cols=13 Identities=15% Similarity=0.600 Sum_probs=6.8
Q ss_pred CchhHHHHHHHHH
Q 032886 1 MGIEMRIFMMISI 13 (131)
Q Consensus 1 m~~~~~~~~~~~~ 13 (131)
|.|+..++|++++
T Consensus 1 m~~~~~~~ll~~v 13 (91)
T TIGR01165 1 MSMKKTIWLLAAV 13 (91)
T ss_pred CCcchhHHHHHHH
Confidence 6666655444433
No 31
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=31.68 E-value=27 Score=23.56 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHH--HHHHhhcccce
Q 032886 1 MGIEMRIFMMISI--VLCLCSAAVHA 24 (131)
Q Consensus 1 m~~~~~~~~~~~~--~~~l~s~~~~~ 24 (131)
|-++..|+|.+-+ |+..+|+.+++
T Consensus 1 M~~Ktnlfl~lSLailLmIISSqv~A 26 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMIISSQVDA 26 (93)
T ss_pred CcchhhhHHHHHHHHHHHHHhhHHHH
Confidence 6667777766655 66666764444
No 32
>PRK15187 fimbrial protein BcfA; Provisional
Probab=30.17 E-value=64 Score=23.74 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHH-HHhhc-cc---ceeeEEEEEECCCCCCCCCCCCCCCCceEEEe
Q 032886 1 MGIEMRIFMMISIVL-CLCSA-AV---HAAQGNAVYYKPPYSHSACYGNQDNGPMVTGV 54 (131)
Q Consensus 1 m~~~~~~~~~~~~~~-~l~s~-~~---~~~~G~aT~Y~~~~~~gaC~~~~~~~~~~aA~ 54 (131)
|+++..++++..+++ ...++ ++ ....|+.+|.|.-. ...|--...+.+..+-|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~I~f~G~iv-~~tC~V~~~s~~~~V~L 58 (180)
T PRK15187 1 MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVV-DAACSVSADSVDQTVTL 58 (180)
T ss_pred CchhhHHHHHHHHHHHHHhhhhccccccccCCEEEEEEEEe-cccceEcCCCcceEEEC
Confidence 777644433333332 22223 22 25789999998854 56794333333334444
No 33
>PRK09733 putative fimbrial protein; Provisional
Probab=30.01 E-value=60 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=14.0
Q ss_pred cceeeEEEEEECCCCCCCCCC
Q 032886 22 VHAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~~gaC~ 42 (131)
+....|+.+|.|.- -..+|-
T Consensus 21 a~~~~G~i~f~G~I-~~~tC~ 40 (181)
T PRK09733 21 ADEGHGIVKFKGEV-ISAPCS 40 (181)
T ss_pred hhcCCCEEEEEEEE-Eeccee
Confidence 33347899999884 367893
No 34
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=29.22 E-value=74 Score=23.31 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.7
Q ss_pred eeEEEEEECCCCCCCCCC
Q 032886 25 AQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC~ 42 (131)
..|+.+|.|.-. ..+|-
T Consensus 31 ~~G~I~f~G~I~-~~tC~ 47 (185)
T PRK15194 31 DGGTIHFEGELV-NAACS 47 (185)
T ss_pred CceEEEEEEEEE-eccce
Confidence 469999998853 56893
No 35
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=29.11 E-value=32 Score=21.44 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=30.9
Q ss_pred CeEEEEEEeccCCCCC------CcEEcCHHHHHhhcCC--CCcEEEEEE
Q 032886 88 NSVVVKVVDYCRQPCN------GILNLSQDAFNEIADL--DAGKVIVEY 128 (131)
Q Consensus 88 ~~v~v~V~D~Cp~~C~------~~lDLS~~aF~~la~~--~~G~v~v~w 128 (131)
..--+...++|. -|+ ..|-|+.-.|.++|.. =.|+..-+|
T Consensus 14 ~~~~~r~~nRC~-~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW 61 (61)
T COG0199 14 PKSPGRGRNRCR-RCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61)
T ss_pred CCcccccccccc-ccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence 344556788998 787 5699999999999964 368877776
No 36
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=28.75 E-value=37 Score=23.12 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeccCCCCC------CcEEcCHHHHHhhcC--CCCcEEEEEE
Q 032886 86 PGNSVVVKVVDYCRQPCN------GILNLSQDAFNEIAD--LDAGKVIVEY 128 (131)
Q Consensus 86 ~g~~v~v~V~D~Cp~~C~------~~lDLS~~aF~~la~--~~~G~v~v~w 128 (131)
|..+--+.+.++|- -.+ ..|-||.-.|.++|. .=.|+..-+|
T Consensus 51 Prnss~~R~rNRC~-~TGR~Rgv~r~FgLsRi~~Rela~~G~lPGv~KaSW 100 (100)
T PRK06911 51 PVNSNPVRYVTRCK-QCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 (100)
T ss_pred CCccCcchhhcccC-CCCCCcccccccCchHHHHHHHHHcCCCCCeecccC
Confidence 34566677889997 433 889999999999985 4478887777
No 37
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=26.66 E-value=54 Score=17.89 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=12.6
Q ss_pred ccCCCCCCcEEcCHHHH
Q 032886 97 YCRQPCNGILNLSQDAF 113 (131)
Q Consensus 97 ~Cp~~C~~~lDLS~~aF 113 (131)
.|| .|...+.++.+..
T Consensus 4 ~CP-~C~~~f~v~~~~l 19 (37)
T PF13719_consen 4 TCP-NCQTRFRVPDDKL 19 (37)
T ss_pred ECC-CCCceEEcCHHHc
Confidence 588 8998888888753
No 38
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=26.36 E-value=53 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHHHh-hcccceeeEE
Q 032886 1 MGIEMRIFMMISIVLCLC-SAAVHAAQGN 28 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~-s~~~~~~~G~ 28 (131)
|+|...|+++.+.+.+.. ++.+....|.
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~~sa~a~gg~ 29 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGTASAFAFGGK 29 (170)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 777777777766664444 5534444443
No 39
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=25.90 E-value=45 Score=15.86 Aligned_cols=6 Identities=50% Similarity=0.296 Sum_probs=2.6
Q ss_pred HHHhhc
Q 032886 15 LCLCSA 20 (131)
Q Consensus 15 ~~l~s~ 20 (131)
+++.|.
T Consensus 11 LLliSf 16 (19)
T PF13956_consen 11 LLLISF 16 (19)
T ss_pred HHhccc
Confidence 344444
No 40
>CHL00074 rps14 ribosomal protein S14
Probab=24.67 E-value=27 Score=23.75 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCeEEEEEEeccCCCCC------CcEEcCHHHHHhhcC--CCCcEEEEEE
Q 032886 86 PGNSVVVKVVDYCRQPCN------GILNLSQDAFNEIAD--LDAGKVIVEY 128 (131)
Q Consensus 86 ~g~~v~v~V~D~Cp~~C~------~~lDLS~~aF~~la~--~~~G~v~v~w 128 (131)
|..+--+.|.++|- -++ ..|-||.-.|.++|. .=.|+..-+|
T Consensus 51 pr~ss~tRi~NRC~-~TGR~Rgv~r~F~LsRi~~Re~a~~G~ipGv~KaSW 100 (100)
T CHL00074 51 PRNSAPTRLHNRCF-LTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 (100)
T ss_pred CcccchHHHhcccc-CCCCCCccccCcCchHHHHHHHHHcCCCCCcccccC
Confidence 34566677889997 443 889999999999985 4478877776
No 41
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=24.37 E-value=74 Score=19.20 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHh
Q 032886 3 IEMRIFMMISIVLCLC 18 (131)
Q Consensus 3 ~~~~~~~~~~~~~~l~ 18 (131)
||+..+|..++|++|-
T Consensus 1 MRTL~LLaAlLLlAlq 16 (52)
T PF00879_consen 1 MRTLALLAALLLLALQ 16 (52)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4566666665555554
No 42
>PF06873 SerH: Cell surface immobilisation antigen SerH; InterPro: IPR009670 This entry consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) [].
Probab=24.21 E-value=61 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHHHHHh
Q 032886 1 MGIEMRIFMMISIVLCLC 18 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~ 18 (131)
|+++++|+.++|+++++.
T Consensus 1 M~~k~lii~Lii~~llv~ 18 (403)
T PF06873_consen 1 MQNKILIICLIISSLLVS 18 (403)
T ss_pred CcchhhHHHHHHHHHHHh
Confidence 888888777776544443
No 43
>PF14369 zf-RING_3: zinc-finger
Probab=23.43 E-value=75 Score=17.28 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=6.6
Q ss_pred ccCCCCCCcE
Q 032886 97 YCRQPCNGIL 106 (131)
Q Consensus 97 ~Cp~~C~~~l 106 (131)
.|| .|.++|
T Consensus 23 ~CP-~C~~gF 31 (35)
T PF14369_consen 23 ACP-RCHGGF 31 (35)
T ss_pred CCc-CCCCcE
Confidence 599 888554
No 44
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=23.24 E-value=1e+02 Score=18.75 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHHHHHhhc
Q 032886 1 MGIEMRIFMMISIVLCLCSA 20 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~ 20 (131)
|=+.+.|++++|++.-|.|.
T Consensus 1 mlk~lkf~lv~imlaqllsc 20 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSC 20 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcC
Confidence 66778889999998888877
No 45
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=23.07 E-value=86 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=8.9
Q ss_pred CCCCcEEEEEEEE
Q 032886 118 DLDAGKVIVEYNP 130 (131)
Q Consensus 118 ~~~~G~v~v~w~~ 130 (131)
+...+.+.|+|+-
T Consensus 127 ~yP~v~v~iew~L 139 (158)
T KOG4063|consen 127 NYPEVSVIIEWQL 139 (158)
T ss_pred cCCceeEEEEEEE
Confidence 4556777788874
No 46
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=2.3e+02 Score=21.95 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=21.5
Q ss_pred EEEECCCCCCCCC-CCCCCCCceEEE-eccccccC
Q 032886 29 AVYYKPPYSHSAC-YGNQDNGPMVTG-VSDALWRN 61 (131)
Q Consensus 29 aT~Y~~~~~~gaC-~~~~~~~~~~aA-~s~~~~~~ 61 (131)
|-||-...+...| ....|.+.|+.+ ....+|++
T Consensus 20 a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~ 54 (215)
T KOG1690|consen 20 ALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDD 54 (215)
T ss_pred EEEEEecCCcccchhhhCCCCcEEEeeeeeeeecc
Confidence 3444333468999 667798888866 34567765
No 47
>PRK14758 hypothetical protein; Provisional
Probab=22.60 E-value=1.1e+02 Score=15.85 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHhh
Q 032886 3 IEMRIFMMISIVLCLCS 19 (131)
Q Consensus 3 ~~~~~~~~~~~~~~l~s 19 (131)
++|-++|+++.+.+++.
T Consensus 5 YrFEliLivlIlCalia 21 (27)
T PRK14758 5 YRFEFILIILILCALIA 21 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555553
No 48
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=22.56 E-value=3.5e+02 Score=23.74 Aligned_cols=52 Identities=29% Similarity=0.344 Sum_probs=33.9
Q ss_pred CcCCCCeEEEEEccCCCCCCCCCCCCCeEEEEEEeccCCCC-CCcEEcCHHHHHhhcCCCCcEEEE
Q 032886 62 GQACGKRYRVRCIRGANQAPHPCKPGNSVVVKVVDYCRQPC-NGILNLSQDAFNEIADLDAGKVIV 126 (131)
Q Consensus 62 g~~CG~c~~v~~~~~~~~~~~~c~~g~~v~v~V~D~Cp~~C-~~~lDLS~~aF~~la~~~~G~v~v 126 (131)
|-.=+..++|+. + ++++.+++.=. ..-= ++.+-||..+|++|.-.+.-.+.|
T Consensus 27 g~~~~~rv~v~~-----------~-~~~~~a~~~~~-~~~~~~g~~gls~~~~~~l~~~~g~~v~v 79 (500)
T TIGR03327 27 GVHPGDRVRIES-----------G-GKSVVGIVDST-DTLVEKGEIGLSHEVLEELGISEGEVVEV 79 (500)
T ss_pred CCCCCCeEEEEe-----------C-CEEEEEEEEcc-cccccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 334468888886 3 67777665433 2011 288999999999997654445554
No 49
>PHA03298 envelope glycoprotein L; Provisional
Probab=22.36 E-value=1.9e+02 Score=21.04 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHHHhhc
Q 032886 1 MGIEMRIFMMISIVLCLCSA 20 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~ 20 (131)
|++.+.+..-.+-++.|+|+
T Consensus 1 mgagaaia~~aaalial~ss 20 (167)
T PHA03298 1 MGAGAAIAFFAAALIALCSS 20 (167)
T ss_pred CchhHHHHHHHHHHHHHHhh
Confidence 78888888777777888765
No 50
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=22.28 E-value=1.5e+02 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred CCeEEEEEEe-ccCCCCCCcEEcCHHHHHhhcC-CCCcEEEEEEEE
Q 032886 87 GNSVVVKVVD-YCRQPCNGILNLSQDAFNEIAD-LDAGKVIVEYNP 130 (131)
Q Consensus 87 g~~v~v~V~D-~Cp~~C~~~lDLS~~aF~~la~-~~~G~v~v~w~~ 130 (131)
++.+++..+| .|| -|. .+++.+.+ .+.|.|.|.|..
T Consensus 117 ak~~I~vFtDp~Cp-yC~-------kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 117 APRIVYVFADPNCP-YCK-------QFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCeEEEEEECCCCh-hHH-------HHHHHHHHHhhcCceEEEEEe
Confidence 4566666777 699 886 22233332 234667776654
No 51
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=22.05 E-value=92 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=15.1
Q ss_pred cceeeEEEEEECCCCCCCCC
Q 032886 22 VHAAQGNAVYYKPPYSHSAC 41 (131)
Q Consensus 22 ~~~~~G~aT~Y~~~~~~gaC 41 (131)
.....|+.+|.|.- -...|
T Consensus 23 ~~a~~g~I~f~G~I-v~~tC 41 (197)
T PRK15262 23 PAYAGQDVDLTANI-KNSTC 41 (197)
T ss_pred ccccCCEEEEEEEE-EcCCc
Confidence 57778999998875 36788
No 52
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=21.78 E-value=35 Score=23.19 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCeEEEEEEeccCCCCC------CcEEcCHHHHHhhcC--CCCcEEEEEE
Q 032886 86 PGNSVVVKVVDYCRQPCN------GILNLSQDAFNEIAD--LDAGKVIVEY 128 (131)
Q Consensus 86 ~g~~v~v~V~D~Cp~~C~------~~lDLS~~aF~~la~--~~~G~v~v~w 128 (131)
|..+--+.|.++|. -++ ..|-||.-.|.++|. .=.|+..-+|
T Consensus 52 Pr~ss~tRi~NRC~-~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 52 PRNSSPTRLRNRCE-LTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred CcccchHHHhcccc-CCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 34556677888997 433 889999999999985 3478887777
No 53
>PRK15306 putative fimbrial protein StkD; Provisional
Probab=21.76 E-value=64 Score=24.14 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHHHHHhhc---ccceeeEEEEEECCCCCCCCCC
Q 032886 1 MGIEMRIFMMISIVLCLCSA---AVHAAQGNAVYYKPPYSHSACY 42 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~---~~~~~~G~aT~Y~~~~~~gaC~ 42 (131)
|+-.|.++.+.++.+++++. +++..+|+.+|.|.- -..+|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~s~~~~aa~~~~g~I~F~G~I-v~~~C~ 44 (190)
T PRK15306 1 MKRNRLSLPIAALAVMAASGSALAANSTNLDVNFTATI-LETTCD 44 (190)
T ss_pred CccceeehHHHHHHHHHhchhhhhcccCCcEEEEEEEE-ecCCce
Confidence 55555555444444334433 122247999998884 367893
No 54
>PRK11367 hypothetical protein; Provisional
Probab=21.58 E-value=47 Score=28.66 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHHHhhcccceeeE
Q 032886 1 MGIEMRIFMMISIVLCLCSAAVHAAQG 27 (131)
Q Consensus 1 m~~~~~~~~~~~~~~~l~s~~~~~~~G 27 (131)
|+++ ++.+|++++..-..+.|+.|
T Consensus 2 mkKs---a~gVIVaLga~wtGgsWYTG 25 (476)
T PRK11367 2 IRKS---ATGVIVALAVIWGGGTWYTG 25 (476)
T ss_pred Cccc---hhhhhhhhhhhhccccceec
Confidence 6666 45555555544443444444
Done!