Query 032887
Match_columns 131
No_of_seqs 118 out of 1137
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 11:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032887.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032887hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubp1 d.27.1.1 (P:1-83) Ribo 100.0 1.4E-43 1E-47 246.7 9.5 82 2-85 1-82 (83)
2 d2gy9p1 d.27.1.1 (P:1-78) Ribo 100.0 8.7E-42 6.3E-46 235.4 8.0 77 2-79 1-77 (78)
3 d3bn0a1 d.27.1.1 (A:2-102) Rib 100.0 4.4E-42 3.2E-46 246.4 3.2 82 2-87 1-82 (101)
4 d1vbva1 b.34.17.1 (A:3-97) Hyp 53.8 3.4 0.00025 27.1 2.2 14 13-26 45-58 (95)
5 d1jjcb2 a.6.1.1 (B:400-474) Do 22.0 54 0.004 19.4 3.9 32 50-82 3-34 (75)
6 d1jdpa_ c.93.1.1 (A:) Hormone 21.0 77 0.0056 21.7 5.1 37 4-44 358-394 (401)
7 d1oo2a_ b.3.4.1 (A:) Transthyr 18.7 55 0.004 21.3 3.6 58 3-68 20-77 (116)
8 d1wxxa1 b.122.1.9 (A:1-64) Hyp 17.1 35 0.0026 20.2 2.1 13 31-44 41-53 (64)
9 d1ohpa1 d.17.4.3 (A:1-125) Del 17.1 23 0.0017 21.0 1.2 15 29-43 105-119 (125)
10 d1lg7a_ d.213.1.1 (A:) VSV mat 15.0 3 0.00022 30.4 -4.1 11 13-23 43-53 (170)
No 1
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.4e-43 Score=246.73 Aligned_cols=82 Identities=46% Similarity=0.925 Sum_probs=77.8
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 032887 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g 81 (131)
||+|||+|+|+||+|||||||+|++++|||+|||+||||||+.+. ++.+.||.|||+|||++|||||++|++||+++|
T Consensus 1 MvkIRL~R~G~k~~P~yrIVv~d~r~~rdGk~IE~lG~YnP~~~~--~~~i~l~~eRi~~Wl~~GAqpS~tV~~ll~~~g 78 (83)
T d2uubp1 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTDTARRLLRQAG 78 (83)
T ss_dssp CEEEEEEECSBTTBCCEEEEEEETTSCTTSCCSEEEEEECTTCCS--SCCEEECHHHHHHHHHHTCEECHHHHHHHHHTT
T ss_pred CeEEecccCCCCCCCeEEEEEEecCCCCCCcceeeeeEECCCCCC--CceEEECHHHHHHHHHCCCCCCHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999998643 468999999999999999999999999999999
Q ss_pred CCCC
Q 032887 82 LLPP 85 (131)
Q Consensus 82 ~l~~ 85 (131)
++++
T Consensus 79 i~~~ 82 (83)
T d2uubp1 79 VFRQ 82 (83)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 9986
No 2
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=8.7e-42 Score=235.38 Aligned_cols=77 Identities=40% Similarity=0.810 Sum_probs=73.1
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHH
Q 032887 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFR 79 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~ 79 (131)
||+|||+|+||||+|||||||+|++++|||++||+||+|||+++.. ++.+.||+|||+|||++|||||++|++||++
T Consensus 1 MvkIRL~r~G~k~~P~YrIVv~d~r~~rdgk~iE~lG~YnP~~~~~-~~~i~l~~eri~~Wl~~GAqps~~V~~LLkk 77 (78)
T d2gy9p1 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQGATISDRVAALIKE 77 (78)
T ss_dssp CEEEEEEECCBTTBCCEEEEEEETTSCTTSCCSEECCEECSSCCSC-SCCEECCHHHHHHHTTTTCEECHHHHHHHHH
T ss_pred CeEEecccCCCCCCCeEEEEEeecCCCCCCcceeeeeeECCcCCCC-ccceEecHHHHHHHHHCcCcCCHHHHHHHhh
Confidence 5899999999999999999999999999999999999999998753 5679999999999999999999999999987
No 3
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=4.4e-42 Score=246.39 Aligned_cols=82 Identities=38% Similarity=0.721 Sum_probs=71.1
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 032887 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g 81 (131)
+|+|||+|+||||+|||||||+|+|++|||+|||+||||||..+ +.|.||.|||+|||++|||||+||++||+++|
T Consensus 1 AvkIRL~r~G~k~~p~yrIVv~d~r~~rdGk~iE~lG~ynP~~~----~~i~l~~eri~~Wl~~GAqpS~tV~~lL~~~g 76 (101)
T d3bn0a1 1 AVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRK----VLINVYPEKVKEWVLKGVELSHRAKAILWNHG 76 (101)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETTTT----EEEEECHHHHHHHHHTTCEEEHHHHHHHHHTT
T ss_pred CeEEecccCCCCCCCeeEEEEeecCCCCCCcceeeeeEECCCCc----ccccccHHHHHHHHHcCCCcCHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999742 47999999999999999999999999999999
Q ss_pred CCCCCC
Q 032887 82 LLPPPP 87 (131)
Q Consensus 82 ~l~~~p 87 (131)
+++++.
T Consensus 77 ~~~~~~ 82 (101)
T d3bn0a1 77 ILKEVV 82 (101)
T ss_dssp HHHHHC
T ss_pred Cccccc
Confidence 998643
No 4
>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia coli [TaxId: 562]}
Probab=53.84 E-value=3.4 Score=27.09 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=11.4
Q ss_pred CCCCeeEEEEeccC
Q 032887 13 KNKPFYRVMAADSR 26 (131)
Q Consensus 13 K~rPfYrIVv~dsr 26 (131)
|++|||+|.|-|..
T Consensus 45 r~QPfYhvLv~~~~ 58 (95)
T d1vbva1 45 RAAPWYHVVMEDDN 58 (95)
T ss_dssp -CCCEEEEEEECSS
T ss_pred CCCCcEEEEEEcCC
Confidence 58999999998764
No 5
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=21.98 E-value=54 Score=19.42 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.8
Q ss_pred cceEEeHHHHHHHHHCCCccCHHHHHHHHHcCC
Q 032887 50 KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGL 82 (131)
Q Consensus 50 k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g~ 82 (131)
+.|.|+.+++..-|+.-- ..+.+.++|++.|+
T Consensus 3 ~~I~l~~~~i~~~lG~~i-~~~~i~~~L~~Lg~ 34 (75)
T d1jjcb2 3 EAIPFRPEYANRLLGTSY-PEAEQIAILKRLGC 34 (75)
T ss_dssp CCEEECHHHHHHHHTCCC-CHHHHHHHHHHTTC
T ss_pred eEEEECHHHHHHHhCCCC-CHHHHHHHHHHcCC
Confidence 579999999999997654 44668999999996
No 6
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.05 E-value=77 Score=21.72 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=24.8
Q ss_pred EEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCC
Q 032887 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP 44 (131)
Q Consensus 4 kIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~ 44 (131)
.|++.-.|-+. .-|.|..+.. ..+|+| +.+|.||+..
T Consensus 358 ~v~fd~~Gdr~-~~~~~~~~~~--~~~g~~-~~Vg~~~~~~ 394 (401)
T d1jdpa_ 358 QVSIDANGDRY-GDFSVIAMTD--VEAGTQ-EVIGDYFGKE 394 (401)
T ss_dssp EEEECTTSBBC-CEEEEEEEEE--TTTTEE-EEEEEEETTT
T ss_pred EEEECCCCCcc-CcEEEEEEEE--CCCCEE-EEEEEEECCC
Confidence 46777778765 4566554433 246887 8899999964
No 7
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=18.67 E-value=55 Score=21.30 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=35.7
Q ss_pred eEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCc
Q 032887 3 VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQ 68 (131)
Q Consensus 3 VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAq 68 (131)
|+++|.|...... +-.+..++.--|||.-| +-.-+... ....+|-++-=.||-++|..
T Consensus 20 v~V~L~~~~~~g~---~~~i~~~~Td~dGRi~~-~~~~~~~~----~G~Yel~F~~~~YF~~~~~~ 77 (116)
T d1oo2a_ 20 VALKVSQKTADGG---WTQIATGVTDATGEIHN-LITEQQFP----AGVYRVEFDTKAYWTNQGST 77 (116)
T ss_dssp CEEEEEEECTTSC---EEEEEEEECCTTSCCTT-CSCGGGCC----SEEEEEEECHHHHHHHTTCC
T ss_pred CEEEEEEECCCCC---eEEEEEEEECCCCcCcc-ccCccccc----CeeEEEEEEhHHHHHhcCCC
Confidence 5677877654433 23466677777999644 33222222 13577777777899888753
No 8
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=17.12 E-value=35 Score=20.16 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.2
Q ss_pred CcceeeeeeecCCC
Q 032887 31 GKHLEVLGYYNPLP 44 (131)
Q Consensus 31 Gk~IE~LG~YdP~~ 44 (131)
|+|| =.|+|||..
T Consensus 41 ~~~l-g~g~~np~S 53 (64)
T d1wxxa1 41 RRFL-ALALYNPHT 53 (64)
T ss_dssp TEEE-EEEEECTTS
T ss_pred CcEE-EEEEECCCC
Confidence 5788 569999964
No 9
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=17.07 E-value=23 Score=21.04 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.7
Q ss_pred CCCcceeeeeeecCC
Q 032887 29 RDGKHLEVLGYYNPL 43 (131)
Q Consensus 29 RdGk~IE~LG~YdP~ 43 (131)
+|||.++.=.||||-
T Consensus 105 ~dGkI~~~~~y~d~~ 119 (125)
T d1ohpa1 105 GAGKVVSMRALFGEK 119 (125)
T ss_dssp TTSCEEEEEEECCGG
T ss_pred CCCeEEEEEEEECHH
Confidence 799999999999993
No 10
>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis virus, VSV [TaxId: 11276]}
Probab=14.95 E-value=3 Score=30.41 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=7.7
Q ss_pred CCCCeeEEEEe
Q 032887 13 KNKPFYRVMAA 23 (131)
Q Consensus 13 K~rPfYrIVv~ 23 (131)
-||||||+++.
T Consensus 43 gKrpFYr~l~~ 53 (170)
T d1lg7a_ 43 GKRPFYKILAF 53 (170)
T ss_dssp GGHHHHHHHHH
T ss_pred CCChHHHHHHH
Confidence 36788888653
Done!