Your job contains 1 sequence.
>032889
MQAFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQ
VTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDE
IANPFMQPDGA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032889
(131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 453 7.3e-43 1
FB|FBgn0261068 - symbol:LSm7 species:7227 "Drosophila mel... 311 8.2e-28 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 307 2.2e-27 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 303 5.7e-27 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 298 1.9e-26 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 288 2.2e-25 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 288 2.2e-25 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 275 5.3e-24 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 274 6.8e-24 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 269 2.3e-23 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 248 3.9e-21 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 248 3.9e-21 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 213 2.0e-17 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 142 6.6e-10 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 142 6.6e-10 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 142 6.6e-10 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 142 6.6e-10 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 142 6.6e-10 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 141 8.4e-10 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 141 8.4e-10 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 137 2.2e-09 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 135 3.6e-09 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 127 2.6e-08 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 127 2.6e-08 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 126 3.3e-08 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 126 3.3e-08 1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot... 124 5.3e-08 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 123 6.8e-08 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 122 8.7e-08 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 119 1.8e-07 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 119 1.8e-07 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 116 3.8e-07 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 111 1.3e-06 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 111 1.3e-06 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 111 1.3e-06 1
POMBASE|SPBC9B6.05c - symbol:lsm3 "U6 snRNP-associated pr... 109 2.1e-06 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 108 2.6e-06 1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 106 4.3e-06 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 105 5.5e-06 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 103 9.0e-06 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 102 1.1e-05 1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 100 1.9e-05 1
ASPGD|ASPL0000075585 - symbol:AN10561 species:162425 "Eme... 102 2.0e-05 1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme... 97 3.9e-05 1
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 97 3.9e-05 1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 97 3.9e-05 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 97 3.9e-05 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 97 3.9e-05 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 97 3.9e-05 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 97 3.9e-05 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 97 3.9e-05 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 97 3.9e-05 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 96 5.0e-05 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 96 5.0e-05 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 94 8.1e-05 1
DICTYBASE|DDB_G0272320 - symbol:snrpb "putative small nuc... 96 0.00021 1
UNIPROTKB|G4MST0 - symbol:MGG_04539 "Uncharacterized prot... 88 0.00035 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 93 0.00056 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 85 0.00072 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 85 0.00072 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 85 0.00072 1
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 89/94 (94%), Positives = 93/94 (98%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60
Query: 93 TDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFM 126
TDQTR+LGLIVCRGTAVMLVSPTDGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94
>FB|FBgn0261068 [details] [associations]
symbol:LSm7 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0022008 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 GeneTree:ENSGT00510000047872 HSSP:O29885 EMBL:AY113637
RefSeq:NP_001246045.1 RefSeq:NP_609807.1 UniGene:Dm.19844
SMR:Q9VJI7 IntAct:Q9VJI7 MINT:MINT-827616 STRING:Q9VJI7
EnsemblMetazoa:FBtr0080934 EnsemblMetazoa:FBtr0308804 GeneID:35003
KEGG:dme:Dmel_CG13277 UCSC:CG13277-RA FlyBase:FBgn0261068
InParanoid:Q9VJI7 OrthoDB:EOG41G1MQ GenomeRNAi:35003 NextBio:791341
Uniprot:Q9VJI7
Length = 110
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 57/96 (59%), Positives = 77/96 (80%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K RKE++LDL+K+++K ++VK GGR+ +G LKGYD LLNLVLD VE+LRD+D+P K
Sbjct: 13 KEKRRKESILDLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYK 72
Query: 92 TTD-QTRQLGLIVCRGTAVMLVSPTDGTDEIANPFM 126
T+ QTR LGL+VCRGTA++L+ P DG + IANPF+
Sbjct: 73 LTEEQTRSLGLVVCRGTALVLICPQDGVESIANPFI 108
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 55/100 (55%), Positives = 76/100 (76%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYK 63
Query: 92 TTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 131
T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q A
Sbjct: 64 LTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/96 (56%), Positives = 75/96 (78%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE++ DL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K T+
Sbjct: 8 KKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQP-DG 130
TRQLGL+VCRGT+V+L+ P DG + I NPF+Q DG
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG 103
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 54/90 (60%), Positives = 73/90 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+RDA+DPL TTD+
Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPF 125
R LGL+VCRG++VM+V PT+G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 52/90 (57%), Positives = 72/90 (80%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE+V+DL +F+DK ++VK GGR+ +G L+G+DQLLN+VLD+ E+LRD +P D+
Sbjct: 9 KKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDE 68
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPF 125
TRQLGLIV RGTA+ +VSP DG ++IANPF
Sbjct: 69 TRQLGLIVARGTAITVVSPADGLEQIANPF 98
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 52/90 (57%), Positives = 72/90 (80%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE+V+DL +F+DK ++VK GGR+ +G L+G+DQLLN+VLD+ E+LRD +P D+
Sbjct: 9 KKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDE 68
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPF 125
TRQLGLIV RGTA+ +VSP DG ++IANPF
Sbjct: 69 TRQLGLIVARGTAITVVSPADGLEQIANPF 98
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 54/94 (57%), Positives = 74/94 (78%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE +LDL K++DK V+VK GGR+V+G LKGYDQL+NLVLD+ E +RD D+ +TT
Sbjct: 46 KKENILDLTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRD-DEGNETT-- 102
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 129
R LGLIV RGT ++L+SP DG+++IANPF+Q +
Sbjct: 103 -RALGLIVARGTLIVLISPADGSEQIANPFVQAE 135
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 53/92 (57%), Positives = 70/92 (76%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE +LDLAK++DK VQVK GGR+V GTLKGYD L+NLVLDE E +RD + +
Sbjct: 54 KKENILDLAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEG----NES 109
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 127
+R LGL+V RGT ++ +SPTDG++ IANPF+Q
Sbjct: 110 SRPLGLVVVRGTLLVAISPTDGSESIANPFLQ 141
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 50/94 (53%), Positives = 73/94 (77%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR+ +D K T
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 79
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPD 129
R+LGL+V RGT ++L++P DG++EI NPF+Q +
Sbjct: 80 IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 44/85 (51%), Positives = 65/85 (76%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
D+ KF+++ ++VK GGR+V GTL G+D + NLVLD+ E++RD +D TD+TR +GL
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 102 IVCRGTAVMLVSPTDGTDEIANPFM 126
IV RGT+V L++P +GT EI+NPF+
Sbjct: 80 IVARGTSVALITPVEGTQEISNPFI 104
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 44/85 (51%), Positives = 65/85 (76%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
D+ KF+++ ++VK GGR+V GTL G+D + NLVLD+ E++RD +D TD+TR +GL
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 102 IVCRGTAVMLVSPTDGTDEIANPFM 126
IV RGT+V L++P +GT EI+NPF+
Sbjct: 80 IVARGTSVALITPVEGTQEISNPFI 104
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 44/92 (47%), Positives = 63/92 (68%)
Query: 32 KMSG-RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL 90
K G ++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD
Sbjct: 18 KFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDEN 77
Query: 91 KT---TDQTRQLGLIVCRGTAVMLVSPTDGTD 119
T + R+LGL V RGT ++ +S +G+D
Sbjct: 78 NTELISKNARKLGLTVIRGTILVSLSSAEGSD 109
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++++
Sbjct: 60 VVIRGNSIIML 70
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++++
Sbjct: 60 VVIRGNSIIML 70
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++++
Sbjct: 60 VVIRGNSIIML 70
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++++
Sbjct: 60 VVIRGNSIIML 70
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D VE + D+T +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K++DK +Q+KL R V GTL+G+DQ +NLV+D VE + DD TD +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDDK---TD----IGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK + +KL G R+V+G L+G+D +N+V+DEAVE+ +D LG+
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSV--------NLGM 59
Query: 102 IVCRGTAVMLVSPTD 116
V RG +V+++ P +
Sbjct: 60 TVIRGNSVVIMEPKE 74
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
++ K++DK + +KL GGR VTG L+G+D +N+VLD+ VE +D + +G+
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKD--------NTKNNIGM 59
Query: 102 IVCRGTAVMLVSPTD 116
+V RG ++++V D
Sbjct: 60 VVIRGNSIVMVEALD 74
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF DK +KL GGR V G L+G+D +NLV+DE VE + T+ Q + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 102 IVCRGTAVMLV 112
+ RG +++++
Sbjct: 60 VEIRGNSIIML 70
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK + + + G R+V G L+GYD LN+VLD+A+E + +DP QLGL
Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPANN----HQLGL 59
Query: 102 -IVCRGTAVMLVSPTD 116
V RG +++ + D
Sbjct: 60 QTVIRGNSIISLEALD 75
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+D+ +E + Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIE--------MAPGGQMNTIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++++
Sbjct: 60 VVIRGNSIIML 70
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 35 GRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTD 94
G+ D KF++K +Q+ L G RQV G L+GYD +NLVLD +E +D +
Sbjct: 6 GKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKD--------E 57
Query: 95 QTRQLGLIVCRGTAV 109
Q +G++V RG ++
Sbjct: 58 QI-DIGVVVIRGNSI 71
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
ET LDL K +D+ V +KL G R + GTL+ +D N+VL +AVE + ++ + ++
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-ELSESE 60
Query: 97 RQLGLIVCRGTAVMLVS-PTDGTD 119
R+ ++ RG V L+S P++ D
Sbjct: 61 RRCEMVFIRGDTVTLISTPSEDDD 84
>UNIPROTKB|G4N3U5 [details] [associations]
symbol:MGG_16841 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
KEGG:mgr:MGG_16841 Uniprot:G4N3U5
Length = 95
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE--FLRDADDPLKTTDQTRQLGLIVC 104
+D+ V VKL G R++ G L YD NLVL + E +++D DD + +R+L ++
Sbjct: 20 LDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVSRKLEMLFV 79
Query: 105 RGTAVMLVSPTD 116
RG +V+++SP+D
Sbjct: 80 RGDSVVMISPSD 91
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/84 (32%), Positives = 50/84 (59%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
M+ K+ DL K +DK + +KL G R V G L+G+D +N+ L + VE + P
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVV----SP--- 53
Query: 93 TDQTRQLGLIVCRGTAVMLVSPTD 116
T++ ++G+++ RG +++L+ P +
Sbjct: 54 TEKY-EIGMVIIRGNSILLMEPLE 76
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK V V+L G R+V G ++GYD LN+VL++A E +D + +K +G
Sbjct: 7 ELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEE-KDGGEKVK-------IGT 58
Query: 102 IVCRGTAVMLVSPTD--GTDE 120
+V RG +V+++ + G D+
Sbjct: 59 VVIRGNSVVMLEAMERIGGDD 79
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K++D+ V V+L G R+V G L+GYD LN+VL++++E D + K ++G
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE---KV-----KIGS 59
Query: 102 IVCRGTAVMLVSPTD 116
+ RG +V+++ D
Sbjct: 60 VAIRGNSVIMIETLD 74
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 29 KSLKMSGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL--RD 85
K + +S E LDL + +D+ V VK+ R++ G L+ +DQ LN+VL E E + R+
Sbjct: 6 KEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
Query: 86 ADDPL--KTTDQTRQL-GLIVCRGTAVMLVSP 114
D+ + QT+++ ++ RG +V+LVSP
Sbjct: 66 VDEDTFEEIYKQTKRVVPMLFVRGDSVILVSP 97
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K+++K V +L G R+V G L+GYD +N+VLDEA E K + +G+
Sbjct: 7 ELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEE--------KPGGEKVAIGM 58
Query: 102 IVCRGTAVMLVSPTDGTDE 120
IV RG +V+++ + E
Sbjct: 59 IVIRGNSVVMLEALERISE 77
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>POMBASE|SPBC9B6.05c [details] [associations]
symbol:lsm3 "U6 snRNP-associated protein Lsm3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] PomBase:SPBC9B6.05c
INTERPRO:IPR001163 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723 GO:GO:0006402
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540
GO:GO:0045292 KO:K12622 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223550 OMA:MVFVRGD PIR:T40786 RefSeq:NP_595747.1
PDB:4EMG PDBsum:4EMG ProteinModelPortal:Q9Y7M4 IntAct:Q9Y7M4
STRING:Q9Y7M4 EnsemblFungi:SPBC9B6.05c.1 GeneID:2540212
KEGG:spo:SPBC9B6.05c OrthoDB:EOG4JQ77D NextBio:20801344
Uniprot:Q9Y7M4
Length = 93
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT--- 96
LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E + DD D+
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70
Query: 97 --RQLGLIVCRGTAVMLVSP 114
+ ++ RG +V+L++P
Sbjct: 71 IRKHYEMLFVRGDSVILIAP 90
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLG 100
+ LA F+++ VQV GR V G+LKG+D NL+L ++ E + D ++T LG
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIP----LG 56
Query: 101 LIVCRGTAVMLV 112
+ + RG V +V
Sbjct: 57 VYLLRGENVAMV 68
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 33 MSGRKE-TV---LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR--D 85
MSG +E TV LDL + +D+ + VKL R++ G L +DQ LN++L + E + +
Sbjct: 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query: 86 ADDP-----LKTTDQTRQLGLIVCRGTAVMLVSP 114
DD ++TT +T + L V RG V+LVSP
Sbjct: 61 IDDETYEEIVRTTKRTIEF-LFV-RGDGVILVSP 92
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 35 GRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTT 93
G E LDL + +D+ + VK+ R++ G L YDQ LN++L + E ++ + +T
Sbjct: 7 GTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD 66
Query: 94 DQT-----RQLGLIVCRGTAVMLVSP 114
++ R + ++ RG V+L+SP
Sbjct: 67 EEIIRNIKRNIKMLFVRGDGVILISP 92
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQL 99
V+D K +++ V + L R+ GTL G+D +N++L++AVE+L D +D + +
Sbjct: 11 VID--KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHH 68
Query: 100 GLIVCRGTAVMLVSP 114
G ++ G + ++ P
Sbjct: 69 GRMLLSGNNIAILVP 83
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 31 LKMSGRKETVLD--LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD 88
+ +G +E L LA ++D+ + V L GR++ GTL+ +DQ N VL+ A E + +
Sbjct: 1 MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60
Query: 89 PLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFM 126
LGL V RG V+L+ D E P M
Sbjct: 61 YCDIP-----LGLYVIRGENVVLIGELDTEREELPPHM 93
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT--- 96
LDL + +D+ V VK+ R++ G L +DQ LN+VL +A E + + +T ++
Sbjct: 19 LDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKT 78
Query: 97 --RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LVSP
Sbjct: 79 AKRTIPMLFVRGDGVILVSP 98
>ASPGD|ASPL0000075585 [details] [associations]
symbol:AN10561 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0003676 GO:GO:0030529 EMBL:BN001303 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
OMA:PIIRPPG EnsemblFungi:CADANIAT00005970 Uniprot:C8V8F9
Length = 196
Score = 102 (41.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 51 VQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR--------DADDPLKTTDQTRQLGLI 102
++V L GRQ+TG + +D+ +NLVL + EF R + PL ++ R LGL
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPGNAPLVEAEEKRTLGLT 60
Query: 103 VCRGTAVMLVSPTDG 117
+ RGT V+ S DG
Sbjct: 61 IVRGTHVVSCS-VDG 74
>ASPGD|ASPL0000060673 [details] [associations]
symbol:AN10007 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
Uniprot:C8VRD4
Length = 96
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE--FLRDADDPLKTTDQT- 96
LDL + +D+ V VKL G R++ G L YD NLVL + E ++ + D+ + +T
Sbjct: 16 LDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRTI 75
Query: 97 -RQLGLIVCRGTAVMLVSP 114
+Q ++ RG +V+L+SP
Sbjct: 76 KKQEEMLFVRGDSVVLISP 94
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQ--LG 100
L +++ V + GR GTLKG+DQ +N+++DE E + TT Q LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERV------FSTTSGIEQIVLG 57
Query: 101 LIVCRGTAVMLVSPTDGT 118
L + RG + ++ D T
Sbjct: 58 LHIIRGDNIAVIGLIDET 75
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 9 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 68
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 69 YKSTKRNIPMLFVRGDGVVLVAP 91
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 97 -----RQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
LA ++DK + V L GR++ G L+ +DQ N VL+EA E + D D LGL
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGD---LYCDIP--LGLY 69
Query: 103 VCRGTAVMLVSPTD 116
+ RG V+L+ D
Sbjct: 70 IIRGENVVLIGELD 83
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 58 GRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLV 112
G ++ G ++G+D+ +NLV+D+A+E + D T ++ R LG I+ +G V L+
Sbjct: 39 GIRIEGKIRGFDEFMNLVIDDAIEVKQITKD--NTEEKRRPLGQILLKGDNVSLI 91
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLR--DADDP-----LKT 92
LDL + +++ + VKL R++ G L +DQ LN++L + E + + DD ++T
Sbjct: 13 LDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRT 72
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
T +T + + RG V+LVSP
Sbjct: 73 TKRT--VPFLFVRGDGVILVSP 92
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 58 GRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116
G ++ G + G+D+ +N+V+DEAVE ++ D + ++ LG I+ +G + L++ D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>DICTYBASE|DDB_G0272320 [details] [associations]
symbol:snrpb "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] dictyBase:DDB_G0272320 INTERPRO:IPR001163
GO:GO:0005634 GenomeReviews:CM000151_GR GO:GO:0003723
EMBL:AAFI02000008 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P14678 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
RefSeq:XP_645139.1 ProteinModelPortal:Q55A45 SMR:Q55A45
STRING:Q55A45 EnsemblProtists:DDB0233178 GeneID:8618309
KEGG:ddi:DDB_G0272320 OMA:NMPPQGF Uniprot:Q55A45
Length = 274
Score = 96 (38.9 bits), Expect = 0.00021, P = 0.00021
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MSG ++ + ++++ ++V + GR + G +D+ +N+V+ +A EF R +
Sbjct: 1 MSGMPKSS-KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKED 59
Query: 93 TDQTRQLGLIVCRGTAVMLVS 113
++ R LG+I+ RG V+ +S
Sbjct: 60 REEKRTLGMILIRGETVVSMS 80
>UNIPROTKB|G4MST0 [details] [associations]
symbol:MGG_04539 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12627 RefSeq:XP_003713591.1 ProteinModelPortal:G4MST0
EnsemblFungi:MGG_04539T0 GeneID:2678209 KEGG:mgr:MGG_04539
Uniprot:G4MST0
Length = 101
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE-FLRDADDPLKTTDQTRQLGL 101
L +VDK V + T GR + GTL D N++L E + AD + D+ +G
Sbjct: 5 LNSYVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTERHIAPADGDEDSVDRP-SVGT 63
Query: 102 IVCRGTAVMLVSPTD 116
+ RG+ +++V D
Sbjct: 64 EIIRGSTILVVGLVD 78
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 93 (37.8 bits), Expect = 0.00056, P = 0.00056
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQ 98
T + VD+ + V L GR + G L+ +DQ NL+L + VE + +++ K ++ R
Sbjct: 42 TTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEEN-KYAEEDR- 99
Query: 99 LGLIVCRGTAVMLVSPTD 116
G+ + RG V+++ D
Sbjct: 100 -GIFMIRGENVVMLGEVD 116
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++ K V V GR + GTL+G DQ +N+VL++ E + +D+ ++ LG+
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVY-SDEGIEVIP----LGVH 58
Query: 103 VCRGTAVMLVSPTDGTDEI 121
+ +G V ++ D DE+
Sbjct: 59 LIKGDDVAVIGEVD--DEL 75
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 34 SGRKETVLDLAKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDP 89
S T+L L + +DK + K+ +++ GTL G+D +N+VL++ VE+ AD
Sbjct: 6 STNPNTLLPL-ELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGK 64
Query: 90 LKTTDQTRQLGLIVCRGTAV-MLVSPTDGTD 119
T +L I+ G + MLV +G +
Sbjct: 65 RMT-----KLDTILLNGNHITMLVPGGEGPE 90
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 34 SGRKETVLDLAKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDP 89
S T+L L + +DK + K+ +++ GTL G+D +N+VL++ VE+ AD
Sbjct: 6 STNPNTLLPL-ELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGK 64
Query: 90 LKTTDQTRQLGLIVCRGTAV-MLVSPTDGTD 119
T +L I+ G + MLV +G +
Sbjct: 65 RMT-----KLDTILLNGNHITMLVPGGEGPE 90
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 131 131 0.00091 102 3 11 22 0.37 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 61
No. of states in DFA: 482 (51 KB)
Total size of DFA: 97 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.34u 0.10s 11.44t Elapsed: 00:00:00
Total cpu time: 11.34u 0.10s 11.44t Elapsed: 00:00:00
Start: Fri May 10 07:07:45 2013 End: Fri May 10 07:07:45 2013