BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032889
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 76/100 (76%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYK 63
Query: 92 TTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA 131
T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q A
Sbjct: 64 LTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 75/96 (78%)
Query: 32 KMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLK 91
K +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E++RD DD K
Sbjct: 4 KEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYK 63
Query: 92 TTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 127
T+ TRQLGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 64 LTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium
discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 73/90 (81%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
+KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+ EF+RDA+DPL TTD+
Sbjct: 8 KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPF 125
R LGL+VCRG++VM+V PT+G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ 95
RKE++LDL+++ D+ +Q TGGRQ+TG LKG+DQL+NLVLD+ E LR+ +D K T
Sbjct: 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPED-GKLTGA 79
Query: 96 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQ 127
R+LGL+V RGT ++L++P DG++EI NPF+Q
Sbjct: 80 IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQ 111
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Query: 36 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT--- 92
++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ VE++ + DD T
Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELI 82
Query: 93 TDQTRQLGLIVCRGTAVMLVSPTDGTD 119
+ R+LGL V RGT ++ +S +G+D
Sbjct: 83 SKNARKLGLTVIRGTILVSLSSAEGSD 109
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 8/75 (10%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK + +KL G R+V+G L+G+D +N+V+DEAVE+ +D + LG+
Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGG--------SVNLGM 59
Query: 102 IVCRGTAVMLVSPTD 116
V RG +V+++ P +
Sbjct: 60 TVIRGNSVVIMEPKE 74
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLVS 113
+V RG +++++
Sbjct: 60 VVIRGNSIIMLE 71
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLVS 113
+V RG +++++
Sbjct: 60 VVIRGNSIIMLE 71
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3 SV=1
Length = 76
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF+DK + +KL GGR V G L+G+D +NLV+DE VE + T+ Q +G+
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59
Query: 102 IVCRGTAVMLVS 113
+V RG +++++
Sbjct: 60 VVIRGNSIIMLE 71
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=2
SV=2
Length = 76
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L KF DK +KL GGR V G L+G+D +NLV+DE VE + T+ Q + +G+
Sbjct: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
Query: 102 IVCRGTAVMLVS 113
+ RG +++++
Sbjct: 60 VEIRGNSIIMLE 71
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana
GN=At2g23930 PE=2 SV=1
Length = 80
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D VE + D+T +G+
Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 59
Query: 102 IVCRGTAVMLV 112
+V RG +++ V
Sbjct: 60 VVIRGNSIVTV 70
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 8/75 (10%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
++ K++DK + +KL GGR VTG L+G+D +N+VLD+ VE +D + +G+
Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKD--------NTKNNIGM 59
Query: 102 IVCRGTAVMLVSPTD 116
+V RG ++++V D
Sbjct: 60 VVIRGNSIVMVEALD 74
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 10/82 (12%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MS R VL+ A ++ V V+L GGR+ G L+GYD +NLVLD A E LK
Sbjct: 1 MSQRPLDVLNEA--LNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEE--------LKE 50
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
+ +R+LG I+ RG V+ VSP
Sbjct: 51 NEASRKLGTIIVRGDTVVYVSP 72
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
+L K++DK + + + G R+V G L+GYD LN+VLD+A+E + +DP QLGL
Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGL 59
Query: 102 -IVCRGTAVMLVSPTDG 117
V RG +++ + D
Sbjct: 60 QTVIRGNSIISLEALDA 76
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K +DK + +KL G R V G L+G+D +N+ L + VE + + + ++G+
Sbjct: 10 DLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVV--------SPTEKYEIGM 61
Query: 102 IVCRGTAVMLVSPTD 116
++ RG +++L+ P +
Sbjct: 62 VIIRGNSILLMEPLE 76
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L K++DK +Q+ L R + GTL+G+DQ +NLV+D VE ++ +G++
Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEV---------NGNEKNDIGMV 60
Query: 103 VCRGTAVMLVS 113
V RG +V+ V
Sbjct: 61 VIRGNSVVTVE 71
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Query: 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGL 101
DL K++D+ V V+L G R+V G L+GYD LN+VL++++E K + ++G
Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE--------EKVDGEKVKIGS 59
Query: 102 IVCRGTAVMLVSPTD 116
+ RG +V+++ D
Sbjct: 60 VAIRGNSVIMIETLD 74
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 51 VQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVM 110
V V+L G R+ G L+GYD +NLVLDEA E LK + R++G +V RG V+
Sbjct: 17 VIVRLKGAREFRGVLQGYDVHMNLVLDEAEE--------LKDGEIVRKIGGVVIRGDNVV 68
Query: 111 LVSP 114
VSP
Sbjct: 69 YVSP 72
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E L+
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE--------LRE 50
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
+ + G +V RG V+ VSP
Sbjct: 51 GEVVSKFGSVVIRGDNVVYVSP 72
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L + + V V+L GGR+ GTL GYD +NLVL +A E ++ + R++G +
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEE--------IQNGEVVRKVGSV 60
Query: 103 VCRGTAVMLVSPTDGTD 119
V RG V+ VSP G +
Sbjct: 61 VIRGDTVVFVSPAPGGE 77
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQT 96
ET LDL K +D+ V +KL G R + GTL+ +D N+VL +AVE + ++ + ++
Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-ELSESE 60
Query: 97 RQLGLIVCRGTAVMLVS-PTDGTD 119
R+ ++ RG V L+S P++ D
Sbjct: 61 RRCEMVFIRGDTVTLISTPSEDDD 84
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 41 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFL-------RDADDPLKT 92
LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E + D D LKT
Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
+ ++ RG +V+L++P
Sbjct: 71 I--RKHYEMLFVRGDSVILIAP 90
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos taurus
GN=NAA38 PE=3 SV=3
Length = 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E + + ++ LGL
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV----VLGLY 60
Query: 103 VCRGTAVMLVSPTD 116
+ RG V ++ D
Sbjct: 61 IVRGDNVAVIGEID 74
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E LRD
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE-LRDG------ 51
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
+ + +V RG V+ VSP
Sbjct: 52 -EVVSKFSSVVIRGDNVVYVSP 72
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0339 PE=3 SV=1
Length = 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E L+
Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEE--------LRE 50
Query: 93 TDQTRQLGLIVCRGTAVMLVSP 114
+ + +V RG V+ VSP
Sbjct: 51 GEVVSKFSSVVIRGDNVVYVSP 72
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCR 105
+VD V VKL G ++ G LK YDQ LN++L +A E R+LGL + R
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEI---------GETSIRRLGLTLVR 66
Query: 106 GTAVMLVSP 114
G +V++++P
Sbjct: 67 GDSVVVITP 75
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L ++ V +KL G R+ G LK +D +NLVL++A E L+ + TR+LG +
Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE--------LEDGEVTRRLGTV 69
Query: 103 VCRGTAVMLVSP 114
+ RG ++ +SP
Sbjct: 70 LIRGDNIVYISP 81
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLG 100
+ LA F+++ VQV GR V G+LKG+D NL+L ++ E + D ++T LG
Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETI----PLG 56
Query: 101 LIVCRGTAVMLV 112
+ + RG V +V
Sbjct: 57 VYLLRGENVAMV 68
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 45 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVC 104
K +++ V + L R+ GTL G+D +N++L++AVE+L D +D + + G ++
Sbjct: 14 KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLL 73
Query: 105 RGTAVMLVSP 114
G + ++ P
Sbjct: 74 SGNNIAILVP 83
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium
discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 SGRKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
G E LDL + +D+ + VK+ R++ G L YDQ LN++L + E ++ + +T
Sbjct: 6 EGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEET 65
Query: 93 TDQ-----TRQLGLIVCRGTAVMLVSP 114
++ R + ++ RG V+L+SP
Sbjct: 66 DEEIIRNIKRNIKMLFVRGDGVILISP 92
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L++ + V V+L G + G L+ D +N+VLDE EF+ DQ R G +
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFV--------GGDQARNYGDV 72
Query: 103 VCRGTAVMLVS 113
RG V+ +S
Sbjct: 73 FIRGNNVLYIS 83
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3 SV=1
Length = 76
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ K +DK V V L G + G L GYD LN+VL A E L+D + ++ G I
Sbjct: 9 IHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA-ELLQDG-------EVVKKYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SPT+
Sbjct: 61 VIRGDNVLAISPTE 74
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L + + V + + G R+ +G L+GYD +N+VL A E + + + I
Sbjct: 14 LKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGV--------FDRI 65
Query: 103 VCRGTAVMLVSPTDGTDE 120
+ RG V+ VSP+ G +E
Sbjct: 66 LVRGDNVIFVSPSKGDNE 83
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 58 GRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116
G ++ G + G+D+ +N+V+DEAVE ++ D + ++ LG I+ +G + L++ D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ- 95
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 96 ----TRQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ- 95
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 96 ----TRQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 38 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQ- 95
E LDL + +D+ + VK+ R++ G L YDQ LN++L + E + + +T ++
Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74
Query: 96 ----TRQLGLIVCRGTAVMLVSP 114
R + ++ RG V+LV+P
Sbjct: 75 YKSTKRNIPMLFVRGDGVVLVAP 97
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ + +DK V V L G + G L GYD LN+VL +A E ++D + ++ G I
Sbjct: 9 IHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA-EMIQDG-------EVVKRYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SPT+
Sbjct: 61 VIRGDNVLAISPTE 74
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 33 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 92
MSG ++ + ++++ ++V + GR + G +D+ +N+V+ +A EF R +
Sbjct: 1 MSGMPKSS-KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKED 59
Query: 93 TDQTRQLGLIVCRGTAVMLVS 113
++ R LG+I+ RG V+ +S
Sbjct: 60 REEKRTLGMILIRGETVVSMS 80
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ + +DK V V L G + G L GYD LN+VL +A E ++D + ++ G I
Sbjct: 9 IHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA-EMVQDG-------EVVKKYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SPT+
Sbjct: 61 VIRGDNVLAISPTE 74
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3 SV=1
Length = 76
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ K +DK V V L G + G L GYD LN+VL +A E ++D + ++ G I
Sbjct: 9 IHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA-ELIQDG-------EVVKKYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SP +
Sbjct: 61 VIRGDNVLALSPVE 74
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=LSM6 PE=3 SV=1
Length = 85
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L+ + K V VKL G GTL+ D +N+ L +A E+ +P+ ++ +
Sbjct: 17 LSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESD----V 72
Query: 103 VCRGTAVMLVS 113
RGT VM +S
Sbjct: 73 FLRGTQVMYIS 83
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ + +DK V V L G + G L GYD LN+VL A E ++D + ++ G I
Sbjct: 9 IHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGA-EMIQDG-------EVVKKYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SP D
Sbjct: 61 VIRGDNVLAISPVD 74
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L + + V + + G R+ +G L+GYD +N+VL A E + + + +
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDR--------V 65
Query: 103 VCRGTAVMLVSPTDG 117
+ RG V+ VSP+ G
Sbjct: 66 LVRGDNVIFVSPSKG 80
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ + +DK V V L G + G L GYD LN+VL A D ++ + + G I
Sbjct: 9 IHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGA--------DYIQDGEVVKSYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SP D
Sbjct: 61 VVRGDNVLAISPVD 74
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
L +VD+ V V L G+++ G L+ +DQ NL+L +E + DD D+ G+
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIY-VDDMYGDIDR----GVY 70
Query: 103 VCRGTAVMLVSPTD 116
+ RG V+L+ D
Sbjct: 71 IVRGENVVLLGELD 84
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLI 102
+ K +DK V V L G + G L GYD LN+VL +A ++ + + G I
Sbjct: 9 IHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADA--------QLIENGEPKKSYGKI 60
Query: 103 VCRGTAVMLVSPTD 116
V RG V+ +SP +
Sbjct: 61 VIRGDNVLAISPVE 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,793,329
Number of Sequences: 539616
Number of extensions: 1688848
Number of successful extensions: 4529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4449
Number of HSP's gapped (non-prelim): 100
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)