Query 032889
Match_columns 131
No_of_seqs 167 out of 1035
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 5.7E-28 1.9E-32 171.6 10.1 98 31-129 16-113 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.9 2E-22 6.9E-27 139.0 9.6 78 41-119 13-90 (96)
3 1th7_A SnRNP-2, small nuclear 99.9 2.7E-22 9.3E-27 134.1 9.2 77 33-117 3-80 (81)
4 3s6n_G Small nuclear ribonucle 99.9 1.7E-22 5.7E-27 133.8 7.6 70 39-116 5-74 (76)
5 4emh_A Probable U6 snRNA-assoc 99.9 2.6E-22 9E-27 140.8 8.8 85 37-130 14-99 (105)
6 4emg_A Probable U6 snRNA-assoc 99.9 5E-22 1.7E-26 136.4 9.7 80 36-115 6-91 (93)
7 4emk_A U6 snRNA-associated SM- 99.9 7.6E-22 2.6E-26 136.0 10.4 73 37-116 18-91 (94)
8 1i4k_A Putative snRNP SM-like 99.9 6.8E-22 2.3E-26 130.7 9.5 71 40-118 5-76 (77)
9 1i8f_A Putative snRNP SM-like 99.9 8.4E-22 2.9E-26 131.7 9.1 71 38-117 10-81 (81)
10 3s6n_F Small nuclear ribonucle 99.9 7.4E-22 2.5E-26 133.7 8.9 76 36-119 3-79 (86)
11 1h64_1 SnRNP SM-like protein; 99.9 1.1E-21 3.7E-26 129.2 9.4 69 40-116 5-74 (75)
12 1d3b_B Protein (small nuclear 99.9 1.1E-21 3.7E-26 133.5 9.2 78 40-117 6-85 (91)
13 1ljo_A Archaeal SM-like protei 99.9 2.5E-21 8.6E-26 128.1 9.5 70 39-116 5-76 (77)
14 1mgq_A SM-like protein; LSM, R 99.8 6.6E-21 2.3E-25 128.0 9.6 70 37-114 13-83 (83)
15 4emk_B U6 snRNA-associated SM- 99.8 3.5E-21 1.2E-25 127.0 7.8 69 40-116 5-74 (75)
16 2fwk_A U6 snRNA-associated SM- 99.8 2.2E-21 7.4E-26 138.9 6.3 83 37-119 26-116 (121)
17 3s6n_E Small nuclear ribonucle 99.8 4.1E-21 1.4E-25 131.8 7.0 78 32-116 9-91 (92)
18 1d3b_A Protein (small nuclear 99.8 2.4E-20 8.3E-25 123.2 9.9 70 39-116 5-75 (75)
19 1n9r_A SMF, small nuclear ribo 99.8 1.3E-20 4.4E-25 129.5 8.3 72 37-116 19-92 (93)
20 3pgw_B SM B; protein-RNA compl 99.8 1.8E-20 6.3E-25 146.7 10.1 76 41-116 7-84 (231)
21 1b34_B Protein (small nuclear 99.8 3.9E-20 1.3E-24 131.8 8.4 80 37-116 25-113 (118)
22 1b34_A Protein (small nuclear 99.8 2.6E-19 9E-24 127.7 9.5 68 42-117 6-73 (119)
23 2y9a_D Small nuclear ribonucle 99.8 1.1E-18 3.9E-23 125.8 7.8 78 39-126 5-83 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 2.7E-18 9.1E-23 124.5 8.0 65 42-118 4-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.0 8.3E-10 2.8E-14 74.6 6.9 68 38-119 7-75 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.6 0.00086 2.9E-08 45.1 9.9 73 44-116 9-83 (88)
27 2fb7_A SM-like protein, LSM-14 96.5 0.012 4.3E-07 40.0 7.5 73 44-116 15-89 (95)
28 2qtx_A Uncharacterized protein 95.9 0.019 6.4E-07 37.1 5.6 34 45-78 22-55 (71)
29 1u1s_A HFQ protein; SM-like ba 95.8 0.011 3.7E-07 39.3 4.1 30 47-76 18-47 (82)
30 2ylb_A Protein HFQ; RNA-bindin 95.7 0.013 4.4E-07 38.1 4.1 29 48-76 21-49 (74)
31 3ahu_A Protein HFQ; SM-like mo 95.6 0.02 6.7E-07 37.7 4.8 32 47-78 22-53 (78)
32 3sb2_A Protein HFQ; SM-like, R 95.5 0.017 5.9E-07 38.0 4.1 29 47-75 19-47 (79)
33 4a53_A EDC3; RNA binding prote 95.2 0.03 1E-06 39.8 4.9 39 41-80 5-45 (125)
34 1kq1_A HFQ, HOST factor for Q 95.2 0.036 1.2E-06 36.2 5.0 32 47-78 18-49 (77)
35 2y90_A Protein HFQ; RNA-bindin 94.8 0.033 1.1E-06 38.5 4.1 30 47-76 20-49 (104)
36 1ycy_A Conserved hypothetical 94.4 0.26 8.9E-06 31.2 7.3 59 43-114 11-69 (71)
37 2vc8_A Enhancer of mRNA-decapp 93.8 0.14 4.9E-06 33.9 5.4 62 44-116 5-68 (84)
38 1y96_B Gemin7, SIP3, GEM-assoc 93.2 0.43 1.5E-05 31.7 7.0 59 43-114 24-83 (85)
39 3hfo_A SSR3341 protein; HFQ, S 90.8 0.29 9.9E-06 31.4 3.9 40 37-76 8-49 (70)
40 3hfn_A ASL2047 protein; HFQ, S 90.3 0.25 8.6E-06 31.8 3.2 39 38-76 11-51 (72)
41 3rux_A BIRA bifunctional prote 89.8 0.43 1.5E-05 37.3 4.9 34 46-79 222-255 (270)
42 1ib8_A Conserved protein SP14. 89.0 0.35 1.2E-05 35.3 3.6 34 42-76 98-135 (164)
43 2xk0_A Polycomb protein PCL; t 87.6 1.6 5.6E-05 27.8 5.5 42 44-85 14-57 (69)
44 2eay_A Biotin [acetyl-COA-carb 84.2 0.74 2.5E-05 35.0 3.3 31 47-79 187-217 (233)
45 1bia_A BIRA bifunctional prote 82.5 2.7 9.1E-05 33.2 6.0 33 46-79 271-303 (321)
46 2ej9_A Putative biotin ligase; 80.4 3.4 0.00011 31.3 5.7 32 46-78 190-221 (237)
47 2rm4_A CG6311-PB, DM EDC3; enh 74.9 14 0.00048 25.0 6.8 63 44-116 8-71 (103)
48 2dxu_A Biotin--[acetyl-COA-car 72.2 2.9 9.8E-05 31.8 3.3 30 47-78 188-217 (235)
49 2e12_A SM-like motif, hypothet 71.3 4.2 0.00014 27.3 3.5 18 49-66 29-46 (101)
50 3rkx_A Biotin-[acetyl-COA-carb 69.7 5.2 0.00018 31.7 4.4 32 46-78 277-308 (323)
51 3bfm_A Biotin protein ligase-l 69.0 6.5 0.00022 29.5 4.6 28 46-78 192-219 (235)
52 4hcz_A PHD finger protein 1; p 63.4 10 0.00036 23.2 3.9 38 47-84 6-46 (58)
53 2j3t_D Trafficking protein par 62.0 2.6 8.9E-05 32.3 1.2 60 9-69 3-67 (219)
54 2eqj_A Metal-response element- 49.6 23 0.00079 22.2 3.9 37 47-83 16-55 (66)
55 4a8c_A Periplasmic PH-dependen 47.2 25 0.00085 28.7 4.8 31 49-79 88-118 (436)
56 1ky9_A Protease DO, DEGP, HTRA 46.5 26 0.00088 28.8 4.8 32 49-80 111-142 (448)
57 3fb9_A Uncharacterized protein 44.0 28 0.00096 23.0 3.8 33 42-76 19-55 (90)
58 2qqr_A JMJC domain-containing 42.8 28 0.00094 24.1 3.8 23 47-69 8-30 (118)
59 3j21_c 50S ribosomal protein L 39.2 31 0.0011 22.7 3.4 53 17-69 4-61 (87)
60 1sqr_A 50S ribosomal protein L 39.1 22 0.00074 23.8 2.7 55 17-71 4-63 (95)
61 3stj_A Protease DEGQ; serine p 38.0 37 0.0013 26.8 4.4 31 49-79 88-118 (345)
62 3sti_A Protease DEGQ; serine p 35.9 40 0.0014 25.3 4.1 31 49-79 88-118 (245)
63 2m0o_A PHD finger protein 1; t 35.8 25 0.00086 22.7 2.5 40 45-84 26-69 (79)
64 3pv2_A DEGQ; trypsin fold, PDZ 34.7 35 0.0012 28.1 3.8 31 49-79 102-132 (451)
65 1x4r_A PARP14 protein; WWE dom 32.9 3.1 0.00011 28.2 -2.4 19 62-80 34-52 (99)
66 3lgi_A Protease DEGS; stress-s 32.9 59 0.002 23.8 4.5 32 49-80 77-108 (237)
67 3tee_A Flagella basal BODY P-r 32.4 31 0.0011 25.8 3.0 22 46-67 169-190 (219)
68 3tjo_A Serine protease HTRA1; 32.1 61 0.0021 23.7 4.5 33 48-80 86-118 (231)
69 1te0_A Protease DEGS; two doma 31.7 59 0.002 25.0 4.5 32 49-80 66-97 (318)
70 1lcy_A HTRA2 serine protease; 31.4 59 0.002 25.1 4.5 32 49-80 71-102 (325)
71 1y8t_A Hypothetical protein RV 31.1 52 0.0018 25.3 4.1 33 48-80 63-95 (324)
72 1sg5_A ORF, hypothetical prote 28.5 23 0.00077 23.1 1.3 55 46-116 23-77 (86)
73 2xdp_A Lysine-specific demethy 26.9 72 0.0024 22.1 3.8 23 47-69 67-89 (123)
74 2e5p_A Protein PHF1, PHD finge 26.6 95 0.0033 19.4 3.9 38 47-84 12-52 (68)
75 3qx1_A FAS-associated factor 1 26.5 41 0.0014 20.9 2.3 22 49-70 8-29 (84)
76 2e5q_A PHD finger protein 19; 26.4 99 0.0034 19.1 3.9 38 47-84 10-50 (63)
77 2qqr_A JMJC domain-containing 25.5 79 0.0027 21.7 3.8 23 47-69 66-88 (118)
78 3qo6_A Protease DO-like 1, chl 24.1 85 0.0029 24.5 4.3 32 49-80 77-108 (348)
79 3num_A Serine protease HTRA1; 23.8 1.2E+02 0.004 23.4 5.0 31 49-79 70-100 (332)
80 4fln_A Protease DO-like 2, chl 23.4 70 0.0024 27.3 3.8 31 49-79 97-128 (539)
81 2wr8_A Putative uncharacterize 22.6 71 0.0024 24.7 3.4 20 58-77 171-190 (259)
82 2zbv_A Uncharacterized conserv 21.6 74 0.0025 24.6 3.4 20 58-77 167-186 (263)
83 3frn_A Flagellar protein FLGA; 20.5 72 0.0024 25.1 3.1 22 46-67 238-260 (278)
84 2w5e_A Putative serine proteas 20.2 1.8E+02 0.0061 20.3 5.0 29 49-79 43-71 (163)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.95 E-value=5.7e-28 Score=171.61 Aligned_cols=98 Identities=51% Similarity=0.894 Sum_probs=58.5
Q ss_pred cccccCccCcccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEE
Q 032889 31 LKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVM 110 (131)
Q Consensus 31 ~~m~~~~~~~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv 110 (131)
....++++..++|.+|++++|+|+|+|||+|+|+|+|||+||||||+||+|++..++.. +.....+.+|+++|||++|+
T Consensus 16 ~~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~-~~~~~~r~lG~v~IRG~nIv 94 (113)
T 4emk_C 16 PTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLV 94 (113)
T ss_dssp ----------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------CCEEEEEEEEECTTTEE
T ss_pred CccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCc-ccccceeEccEEEECCCeEE
Confidence 34556788889999999999999999999999999999999999999999998643211 12246899999999999999
Q ss_pred EEeeCCCCccccCCCCCCC
Q 032889 111 LVSPTDGTDEIANPFMQPD 129 (131)
Q Consensus 111 ~I~~~d~~~~~~~p~~~~~ 129 (131)
+|+++|+.++++|||.+++
T Consensus 95 ~I~~~d~~ee~~~p~~~~~ 113 (113)
T 4emk_C 95 LIAPMDGSEEIPNPFVQAE 113 (113)
T ss_dssp EEEECC-------------
T ss_pred EEEecCccccccCccccCC
Confidence 9999999999999998864
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2e-22 Score=138.97 Aligned_cols=78 Identities=31% Similarity=0.474 Sum_probs=65.0
Q ss_pred ccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCCCCc
Q 032889 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTD 119 (131)
Q Consensus 41 l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~~~ 119 (131)
..|.++++++|+|+|+|||.|+|+|+|||+||||+|+||+|++..++++. .....+.+|.++|||++|++|.+++..+
T Consensus 13 ~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~-~~~~~r~lG~v~IRG~nVv~I~~~d~~~ 90 (96)
T 3bw1_A 13 DLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEE-LSESERRCEMVFIRGDTVTLISTPSEDD 90 (96)
T ss_dssp HHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTC-CCEEEEEEEEEEECGGGEEEEECCC---
T ss_pred HHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccc-cCcceeEcCEEEECCCEEEEEEecCccc
Confidence 35689999999999999999999999999999999999999987543211 1245789999999999999999988544
No 3
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.87 E-value=2.7e-22 Score=134.07 Aligned_cols=77 Identities=42% Similarity=0.607 Sum_probs=65.7
Q ss_pred cccCccCccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEE
Q 032889 33 MSGRKETVLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVML 111 (131)
Q Consensus 33 m~~~~~~~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~ 111 (131)
|+.-+..|.. |.++++++|+|+|+|||+|+|+|.|||+|||++|+||+|++.+ ...+.+|.++|||++|++
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~ 74 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD--------GSGKKLGTIVIRGDNVIL 74 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS--------SCEEEEEEEEECGGGEEE
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC--------CceeECCEEEECCCEEEE
Confidence 4444445655 5799999999999999999999999999999999999999753 357899999999999999
Q ss_pred EeeCCC
Q 032889 112 VSPTDG 117 (131)
Q Consensus 112 I~~~d~ 117 (131)
|.++++
T Consensus 75 i~~~~~ 80 (81)
T 1th7_A 75 ISPLQT 80 (81)
T ss_dssp EEEC--
T ss_pred EEecCC
Confidence 998863
No 4
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.87 E-value=1.7e-22 Score=133.81 Aligned_cols=70 Identities=39% Similarity=0.786 Sum_probs=53.0
Q ss_pred CcccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 39 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 39 ~~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.+..|.+++|++|+|+|+|||+|+|+|.|||+||||+|+||+|++.. ...+.+|.++|||++|++|++.|
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~--------~~~~~lg~v~iRG~~I~~i~~~d 74 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS--------GQQNNIGMVVIRGNSIIMLEALE 74 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------CBSSEEECSSSEEEEEC--
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC--------CcEeEcCEEEECCCeEEEEEecc
Confidence 55689999999999999999999999999999999999999998753 24688999999999999999876
No 5
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.87 E-value=2.6e-22 Score=140.79 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=55.5
Q ss_pred ccCcccH-hhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeC
Q 032889 37 KETVLDL-AKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPT 115 (131)
Q Consensus 37 ~~~~l~L-~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~ 115 (131)
+..|+.+ .+++|++|+|+|++|++|+|+|.|||+||||+|+||+|...++ ...+.+|.++|||++|++|..+
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg-------~~~~~lg~v~IRG~nI~~I~~p 86 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDG-------DKFFRLPECYIRGNNIKYLRIQ 86 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS-------CEEEEEEEEEECGGGEEEEEC-
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCC-------ceeeEcCeEEEeCCeEEEEecC
Confidence 4556664 6899999999999999999999999999999999999986432 2478899999999999999999
Q ss_pred CCCccccCCCCCCCC
Q 032889 116 DGTDEIANPFMQPDG 130 (131)
Q Consensus 116 d~~~~~~~p~~~~~~ 130 (131)
| +.+++|+++...
T Consensus 87 d--~l~d~p~~~~~~ 99 (105)
T 4emh_A 87 D--EVLSQVAKQQAQ 99 (105)
T ss_dssp ---------------
T ss_pred H--HHhhhhhhhhhc
Confidence 8 566899988653
No 6
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.87 E-value=5e-22 Score=136.41 Aligned_cols=80 Identities=34% Similarity=0.561 Sum_probs=63.2
Q ss_pred CccCcccHhhh-cCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCC-----ccCcceEEeceEEEeCCcE
Q 032889 36 RKETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL-----KTTDQTRQLGLIVCRGTAV 109 (131)
Q Consensus 36 ~~~~~l~L~~~-l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~-----~~~~~~r~lg~v~IRG~~I 109 (131)
....|++|.+. ++++|+|+|+|||.|+|+|.|||+||||+|+||+|++....+.. ......+.+|+++|||++|
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGE
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeE
Confidence 45678898654 99999999999999999999999999999999999986422111 1123578999999999999
Q ss_pred EEEeeC
Q 032889 110 MLVSPT 115 (131)
Q Consensus 110 v~I~~~ 115 (131)
++|+++
T Consensus 86 v~I~p~ 91 (93)
T 4emg_A 86 ILIAPP 91 (93)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999975
No 7
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=7.6e-22 Score=135.99 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=63.9
Q ss_pred ccCcccH-hhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeC
Q 032889 37 KETVLDL-AKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPT 115 (131)
Q Consensus 37 ~~~~l~L-~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~ 115 (131)
...|++| .++++++|+|+|++||+|+|+|+|||+||||+|+||+|++... ...+.+|.++|||++|++|.+.
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~-------~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT-------GVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTT-------CCEEEEEEEEECSTTEEEEEEC
T ss_pred cccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCC-------CcEeEcCEEEEcCCEEEEEEeC
Confidence 5667775 6899999999999999999999999999999999999998321 2488999999999999999987
Q ss_pred C
Q 032889 116 D 116 (131)
Q Consensus 116 d 116 (131)
.
T Consensus 91 ~ 91 (94)
T 4emk_A 91 G 91 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 8
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.87 E-value=6.8e-22 Score=130.67 Aligned_cols=71 Identities=44% Similarity=0.698 Sum_probs=63.0
Q ss_pred ccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCCCC
Q 032889 40 VLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGT 118 (131)
Q Consensus 40 ~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~~ 118 (131)
|.. |.++++++|+|+|+|||.|+|+|.|||+|||++|+||+|++.+ ...+.+|.++|||++|++|.++|+.
T Consensus 5 P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG--------EVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp HHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEEEEECC--
T ss_pred HHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC--------CcEeECCEEEECCCEEEEEEeCCCC
Confidence 444 6789999999999999999999999999999999999999753 3588999999999999999998854
No 9
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.86 E-value=8.4e-22 Score=131.74 Aligned_cols=71 Identities=35% Similarity=0.581 Sum_probs=62.7
Q ss_pred cCccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 38 ETVLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 38 ~~~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
..|.. |.++++++|+|+|+|||+|+|+|.|||+||||+|+||+|+ .. ...+.+|.++|||++|++|.++|
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~--------~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID--------GNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET--------TEEEEEEEEEECGGGEEEEEECC
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC--------CcccCCCEEEECCCEEEEEEeCC
Confidence 44555 5789999999999999999999999999999999999999 31 35889999999999999999886
Q ss_pred C
Q 032889 117 G 117 (131)
Q Consensus 117 ~ 117 (131)
+
T Consensus 81 g 81 (81)
T 1i8f_A 81 G 81 (81)
T ss_dssp -
T ss_pred C
Confidence 3
No 10
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.86 E-value=7.4e-22 Score=133.74 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=64.8
Q ss_pred CccCccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEee
Q 032889 36 RKETVLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSP 114 (131)
Q Consensus 36 ~~~~~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 114 (131)
++..|+. |.++++++|+|+|+||+.|+|+|.|||+||||+|+||+|+... ...+.+|.++|||++|++|.+
T Consensus 3 ~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g--------~~~~~lg~v~IRG~nI~~i~~ 74 (86)
T 3s6n_F 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDG--------ALSGHLGEVLIRCNNVLYIRG 74 (86)
T ss_dssp CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEESSEEECGGGEEEEEE
T ss_pred cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCC--------ceeeEccEEEEeCCeEEEEEe
Confidence 3556766 4689999999999999999999999999999999999998631 247899999999999999999
Q ss_pred CCCCc
Q 032889 115 TDGTD 119 (131)
Q Consensus 115 ~d~~~ 119 (131)
+|+.+
T Consensus 75 ~d~~~ 79 (86)
T 3s6n_F 75 VEEEE 79 (86)
T ss_dssp CC---
T ss_pred CCccc
Confidence 98644
No 11
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.86 E-value=1.1e-21 Score=129.21 Aligned_cols=69 Identities=39% Similarity=0.584 Sum_probs=62.0
Q ss_pred ccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 40 VLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 40 ~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
|.. |.++++++|+|+|+|||.|+|+|.|||+|||++|+||+|++.+ ...+.+|.++|||++|++|.+++
T Consensus 5 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG--------EVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp HHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEEEEEC-
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC--------CceeECCEEEECCCEEEEEEeCC
Confidence 444 6789999999999999999999999999999999999999753 35889999999999999999876
No 12
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.86 E-value=1.1e-21 Score=133.50 Aligned_cols=78 Identities=24% Similarity=0.426 Sum_probs=64.7
Q ss_pred cccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCC--CCccCcceEEeceEEEeCCcEEEEeeCCC
Q 032889 40 VLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADD--PLKTTDQTRQLGLIVCRGTAVMLVSPTDG 117 (131)
Q Consensus 40 ~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~--~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~ 117 (131)
...|.++++++|+|+|+|||+|+|+|+|||+||||+|+||+|++..... ..+.....+.+|+++|||++|++|..++.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 3578999999999999999999999999999999999999998643111 01123468899999999999999998763
No 13
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.86 E-value=2.5e-21 Score=128.12 Aligned_cols=70 Identities=34% Similarity=0.589 Sum_probs=62.3
Q ss_pred Cccc-HhhhcCCeEEEEEcCC-cEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 39 TVLD-LAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 39 ~~l~-L~~~l~k~V~V~L~dG-r~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.|.. |.++++++|+|+|+|| ++|+|+|.|||+|||++|+||+|++.. ...+.+|.++|||++|++|.++|
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE--------EKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEEEEEC-
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC--------CcEeECCeEEEeCCeEEEEEeCC
Confidence 3444 6799999999999999 999999999999999999999999742 35889999999999999999886
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.85 E-value=6.6e-21 Score=127.99 Aligned_cols=70 Identities=37% Similarity=0.642 Sum_probs=62.0
Q ss_pred ccCccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEee
Q 032889 37 KETVLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSP 114 (131)
Q Consensus 37 ~~~~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 114 (131)
...|.. |.++++++|+|+|+|||+|+|+|.|||+|||++|+||+|++.+ ...+.+|.++|||++|++|.+
T Consensus 13 ~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 13 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------EVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------EEEEEEEEEEECGGGEEEEEC
T ss_pred CcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC--------CcccCCCEEEECCCEEEEEEC
Confidence 344555 5789999999999999999999999999999999999999743 358899999999999999974
No 15
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.84 E-value=3.5e-21 Score=127.02 Aligned_cols=69 Identities=30% Similarity=0.477 Sum_probs=61.3
Q ss_pred ccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 40 VLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 40 ~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
|+. |.+++|++|+|+|+||++|+|+|.|||+|||++|+||+|+... ...+.+|.++|||++|++|++.|
T Consensus 5 P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 5 PNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG--------KKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT--------EEEEEEEEEEEEGGGSSEEEEC-
T ss_pred hHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC--------CcccEecEEEEcCCeEEEEEecC
Confidence 444 5789999999999999999999999999999999999998632 35789999999999999999875
No 16
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.84 E-value=2.2e-21 Score=138.87 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=64.6
Q ss_pred ccCcccH-hhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCC--CCCccCcc-----eEEeceEEEeCCc
Q 032889 37 KETVLDL-AKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDAD--DPLKTTDQ-----TRQLGLIVCRGTA 108 (131)
Q Consensus 37 ~~~~l~L-~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~--~~~~~~~~-----~r~lg~v~IRG~~ 108 (131)
...|++| .++++++|+|+|+|||.|+|+|+|||+||||+|+||+|++...+ +....... .+.+|+++|||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 3456775 68999999999999999999999999999999999999985411 10000112 7889999999999
Q ss_pred EEEEeeCCCCc
Q 032889 109 VMLVSPTDGTD 119 (131)
Q Consensus 109 Iv~I~~~d~~~ 119 (131)
|++|.+.+...
T Consensus 106 Vv~I~~~~~~~ 116 (121)
T 2fwk_A 106 VAMLVPGGDPD 116 (121)
T ss_dssp EEEEESSSCC-
T ss_pred EEEEEecCCCC
Confidence 99999887544
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.84 E-value=4.1e-21 Score=131.78 Aligned_cols=78 Identities=23% Similarity=0.479 Sum_probs=64.6
Q ss_pred ccccCccCcccH-hhhcCCeEEEEE----cCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeC
Q 032889 32 KMSGRKETVLDL-AKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRG 106 (131)
Q Consensus 32 ~m~~~~~~~l~L-~~~l~k~V~V~L----~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG 106 (131)
+|......|++| .++++++++|++ ++||+|+|+|.|||+||||+|+||+|+..++ ...+.+|.++|||
T Consensus 9 ~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~-------~~~~~lg~v~iRG 81 (92)
T 3s6n_E 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT-------KSRKQLGRIMLKG 81 (92)
T ss_dssp -----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSS-------CCEEEEEEEEECG
T ss_pred ccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCC-------CceeEcCeEEEeC
Confidence 333345668886 589999999999 9999999999999999999999999997532 2578999999999
Q ss_pred CcEEEEeeCC
Q 032889 107 TAVMLVSPTD 116 (131)
Q Consensus 107 ~~Iv~I~~~d 116 (131)
++|++|++.+
T Consensus 82 ~nV~~i~~~~ 91 (92)
T 3s6n_E 82 DNITLLQSVS 91 (92)
T ss_dssp GGEEEEEEC-
T ss_pred CEEEEEEeCC
Confidence 9999999875
No 18
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.83 E-value=2.4e-20 Score=123.22 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=62.5
Q ss_pred CcccH-hhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 39 TVLDL-AKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 39 ~~l~L-~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.|.++ .+++|++|.|+|++|++|+|+|.|||+|||++|+||+|+..+ ...+.+|.++|||++|.+|..||
T Consensus 5 ~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~--------~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD--------GRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT--------SCEEEEEEEEECGGGEEEEEECC
T ss_pred CHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC--------CcEEEcCeEEEeCCEEEEEEcCC
Confidence 46664 689999999999999999999999999999999999998632 24789999999999999999875
No 19
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.83 E-value=1.3e-20 Score=129.46 Aligned_cols=72 Identities=31% Similarity=0.343 Sum_probs=60.5
Q ss_pred ccCccc-HhhhcCCeEEEEEcCC-cEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEee
Q 032889 37 KETVLD-LAKFVDKGVQVKLTGG-RQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSP 114 (131)
Q Consensus 37 ~~~~l~-L~~~l~k~V~V~L~dG-r~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 114 (131)
+..|.. |.+++|++|+|+|+|| ++|+|+|.|||+||||+|+||+|++.. ...+.+|.++|||++|++|.+
T Consensus 19 ~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~--------~~~~~lg~v~IRG~nI~~I~~ 90 (93)
T 1n9r_A 19 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG--------VSHGTLGEIFIRCNNVLYIRE 90 (93)
T ss_dssp -------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT--------EEEEECCSEEECGGGEEEEEE
T ss_pred cCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC--------CeEeEcCEEEEcCCeEEEEEe
Confidence 344544 5789999999999999 999999999999999999999999632 357899999999999999998
Q ss_pred CC
Q 032889 115 TD 116 (131)
Q Consensus 115 ~d 116 (131)
++
T Consensus 91 ~~ 92 (93)
T 1n9r_A 91 LP 92 (93)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.83 E-value=1.8e-20 Score=146.73 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=65.0
Q ss_pred ccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecC-CCC-CccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDA-DDP-LKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 41 l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~-~~~-~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.+|.+|++|+|+|+|+|||+|+|+|+|||+||||||+||+|++... ++. .....+++++|+++|||+||++|+..+
T Consensus 7 ~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred HHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 4789999999999999999999999999999999999999997521 111 122457899999999999999999765
No 21
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.82 E-value=3.9e-20 Score=131.77 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=60.7
Q ss_pred ccCcccH-hhhc--CCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCC------ccCcceEEeceEEEeCC
Q 032889 37 KETVLDL-AKFV--DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPL------KTTDQTRQLGLIVCRGT 107 (131)
Q Consensus 37 ~~~~l~L-~~~l--~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~------~~~~~~r~lg~v~IRG~ 107 (131)
...|+++ .+++ +++|+|+|+|||.|.|+|+|||+||||+|+||+|++....+.. +.....|.+|.++|||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 4567775 5778 5999999999999999999999999999999999975421110 11234678999999999
Q ss_pred cEEEEeeCC
Q 032889 108 AVMLVSPTD 116 (131)
Q Consensus 108 ~Iv~I~~~d 116 (131)
+|++|.+.+
T Consensus 105 nVv~I~~~~ 113 (118)
T 1b34_B 105 SVIVVLRNP 113 (118)
T ss_dssp GEEEEEECC
T ss_pred EEEEEEeCc
Confidence 999999876
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.80 E-value=2.6e-19 Score=127.73 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=61.6
Q ss_pred cHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCCC
Q 032889 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDG 117 (131)
Q Consensus 42 ~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~ 117 (131)
.|.++++++|.|+|+||++|+|+|.+||+||||+|+||+|+..+ ...+.+|.++|||++|++|.++|.
T Consensus 6 ~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~--------~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN--------REPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp HHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT--------SCCEEEEEEEECGGGEEEEECCTT
T ss_pred HHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC--------CceeEcceEEEcCCeEEEEEeccc
Confidence 36789999999999999999999999999999999999998632 236789999999999999999985
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.76 E-value=1.1e-18 Score=125.81 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=65.8
Q ss_pred Cccc-HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCCC
Q 032889 39 TVLD-LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDG 117 (131)
Q Consensus 39 ~~l~-L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~ 117 (131)
.|++ |.++++++|.|+|++|++|+|+|.+||+||||+|+||+|+..++ +...++.++|||++|.+|..+|.
T Consensus 5 ~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g--------~~~~l~~v~IRGnnI~~I~lpd~ 76 (126)
T 2y9a_D 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG--------RVAQLEQVYIRGSKIRFLILPDM 76 (126)
T ss_dssp CSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTS--------CCEEEEEEEECGGGEEEEECCSS
T ss_pred cHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCC--------cEeecccEEEeCCEEEEEEcccc
Confidence 4555 46899999999999999999999999999999999999986331 36789999999999999998874
Q ss_pred CccccCCCC
Q 032889 118 TDEIANPFM 126 (131)
Q Consensus 118 ~~~~~~p~~ 126 (131)
.. ..|++
T Consensus 77 l~--~~~~l 83 (126)
T 2y9a_D 77 LK--NAPML 83 (126)
T ss_dssp CS--SSSHH
T ss_pred cc--chHHh
Confidence 33 44443
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.75 E-value=2.7e-18 Score=124.45 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=59.6
Q ss_pred cHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCCCC
Q 032889 42 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGT 118 (131)
Q Consensus 42 ~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d~~ 118 (131)
.|.+++|++|+|+|+||+.|+|+|.|||+||||+|+||+|+. .+.+|.++|||++|++|.+++..
T Consensus 4 ~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------------~~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------------GEKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------------CCEEEEEEECGGGEEEEEECCCC
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------------CCEeceEEEeCCeEEEEEcCCcc
Confidence 578999999999999999999999999999999999999862 35789999999999999998854
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.01 E-value=8.3e-10 Score=74.64 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred cCcccHhhhcCCeEEEEEcCCcEEEEEEEEEc-CccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 38 ETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 38 ~~~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD-~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
..|++|..++||+|+|+|.||++|+|.|.+|| ...|++|.|+. + ......++|.|..|..|...+
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~----~----------~~~~~~~iI~G~aI~eI~v~~ 72 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL----E----------DGSMSVTGIMGHAVQTVETMN 72 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC----T----------TSCEEEEEECGGGEEEEEEEE
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc----c----------CCeEEEEEEecceEEEEEEec
Confidence 56889999999999999999999999999999 99999999981 1 123478999999999999876
Q ss_pred CCc
Q 032889 117 GTD 119 (131)
Q Consensus 117 ~~~ 119 (131)
..+
T Consensus 73 ~~~ 75 (86)
T 1y96_A 73 EGD 75 (86)
T ss_dssp CCC
T ss_pred chh
Confidence 433
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.61 E-value=0.00086 Score=45.15 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=57.0
Q ss_pred hhhcCCeEEEEEcCCcEEEEEEEEEc-CccceEecceEEEeecCCCC-CccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 44 AKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEAVEFLRDADDP-LKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 44 ~~~l~k~V~V~L~dGr~i~G~L~~fD-~~mNLVL~da~E~~~~~~~~-~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
..|+|+++.+..+.+-.|+|+|...| +..-+.|.+|.-+-.++... ........-+..++.||+.|.-+...+
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 46899999999999999999999999 67789999987765443221 112223445689999999999998876
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.53 E-value=0.012 Score=39.95 Aligned_cols=73 Identities=11% Similarity=0.196 Sum_probs=55.6
Q ss_pred hhhcCCeEEEEEcCCcEEEEEEEEEc-CccceEecceEEEeecCCCC-CccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 44 AKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEAVEFLRDADDP-LKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 44 ~~~l~k~V~V~L~dGr~i~G~L~~fD-~~mNLVL~da~E~~~~~~~~-~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
..|+|+++.+..+.+-.|+|+|..+| +-.-|.|.+|.-+-.++... ........-+..++.||+.|.-+...+
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 57999999999999999999999999 67778999987654332211 112233445689999999999998765
No 28
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.95 E-value=0.019 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred hhcCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 45 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 45 ~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
+--+.+|.|.|.+|-.++|.+.|||+|+=++-.+
T Consensus 22 r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 22 RLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp GGTTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred HHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 4466789999999999999999999998666544
No 29
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.78 E-value=0.011 Score=39.26 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=26.7
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEe
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL 76 (131)
-+.+|.|.|.+|-.++|.+.+||+|+=|+-
T Consensus 18 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 18 ERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 467899999999999999999999986654
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=95.69 E-value=0.013 Score=38.14 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCcEEEEEEEEEcCccceEe
Q 032889 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 48 ~k~V~V~L~dGr~i~G~L~~fD~~mNLVL 76 (131)
+.+|.|.|.+|-.++|++.+||+|+=++-
T Consensus 21 k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 21 RVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 67899999999999999999999985553
No 31
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.60 E-value=0.02 Score=37.66 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=27.6
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
-+.+|.|.|.+|-.++|.+.+||+|+=++-.+
T Consensus 22 ~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 22 ENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp HTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 46789999999999999999999998666433
No 32
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.45 E-value=0.017 Score=38.03 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.7
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceE
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLV 75 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLV 75 (131)
-..+|.|.|.+|-.++|++.+||+|+=++
T Consensus 19 ~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 19 EHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 44679999999999999999999998665
No 33
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.20 E-value=0.03 Score=39.79 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=33.9
Q ss_pred ccHhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEe--cceE
Q 032889 41 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL--DEAV 80 (131)
Q Consensus 41 l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL--~da~ 80 (131)
+++..|+|..|.|+|+||..++|++..+| --+|+| .+|.
T Consensus 5 ~~~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~ 45 (125)
T 4a53_A 5 MSVADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLAN 45 (125)
T ss_dssp CCHHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETT
T ss_pred ccHHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEeccccc
Confidence 35689999999999999999999999999 456777 8873
No 34
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.19 E-value=0.036 Score=36.25 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
-..+|.|.|.+|-.++|++.+||+|+=++-.+
T Consensus 18 ~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 18 NQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred cCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 36789999999999999999999998665433
No 35
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=94.78 E-value=0.033 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=26.2
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEe
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL 76 (131)
-..+|.|.|.+|-.++|++.+||+|+=++-
T Consensus 20 ~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 20 ERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp TTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 445899999999999999999999986655
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.43 E-value=0.26 Score=31.22 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=42.0
Q ss_pred HhhhcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEee
Q 032889 43 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSP 114 (131)
Q Consensus 43 L~~~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 114 (131)
|.++.|+||-|...+...|+|+|.-||.- -|.|.|+..+.. .+-..++++=+.|-.|..
T Consensus 11 L~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~G------------Nk~k~liv~idDinWimL 69 (71)
T 1ycy_A 11 LKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVIG------------NRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETTE------------EEEEEEEEEGGGEEEEEE
T ss_pred HHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHhc------------cccceeEEEeccceEEEe
Confidence 67899999999999999999999999965 477899887642 222356677676666544
No 37
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.80 E-value=0.14 Score=33.91 Aligned_cols=62 Identities=10% Similarity=0.148 Sum_probs=48.6
Q ss_pred hhhcCCeEEEEEcCCc-EEEEEEEEEcCc-cceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 44 AKFVDKGVQVKLTGGR-QVTGTLKGYDQL-LNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 44 ~~~l~k~V~V~L~dGr-~i~G~L~~fD~~-mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.+|+|+.|.+..+++- .|.|.|..+|.. .||.|.++. ..+ -+.....+.+|+.-|..+..++
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG--------~~~~s~eVtls~~DI~~L~ii~ 68 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNG--------VKCLVPEVTFRAGDITELKILE 68 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETT--------EECSSSEEEEEGGGCSEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCC--------CCCCCcEEEEEecChhheEEEe
Confidence 4799999999999999 999999999965 589999995 221 1223345889999888777654
No 38
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=93.21 E-value=0.43 Score=31.68 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=46.7
Q ss_pred HhhhcCCeEEEEEcCCcEEEEEEEEEc-CccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEee
Q 032889 43 LAKFVDKGVQVKLTGGRQVTGTLKGYD-QLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSP 114 (131)
Q Consensus 43 L~~~l~k~V~V~L~dGr~i~G~L~~fD-~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~ 114 (131)
|....|++|.+.+.++-.+.|++.++| ...|+..++-. . + --.++..++|+..|++++.
T Consensus 24 l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-T---P---------iGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 24 LLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-T---P---------IGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-C---T---------TCCEEEEEEEGGGEEEEEE
T ss_pred HHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-C---C---------cccchhhhhhcCCEEEEEe
Confidence 456689999999999999999999999 66777776632 1 1 1136789999999999875
No 39
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=90.83 E-value=0.29 Score=31.37 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=31.1
Q ss_pred ccCcccHhhhcC--CeEEEEEcCCcEEEEEEEEEcCccceEe
Q 032889 37 KETVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 37 ~~~~l~L~~~l~--k~V~V~L~dGr~i~G~L~~fD~~mNLVL 76 (131)
-.+.-.|+.|+. ..|.|+|.+|..++|++.-+|+++=.+-
T Consensus 8 lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 8 LPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 334445677744 5799999999999999999999875554
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=90.29 E-value=0.25 Score=31.83 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=30.6
Q ss_pred cCcccHhhhcC--CeEEEEEcCCcEEEEEEEEEcCccceEe
Q 032889 38 ETVLDLAKFVD--KGVQVKLTGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 38 ~~~l~L~~~l~--k~V~V~L~dGr~i~G~L~~fD~~mNLVL 76 (131)
.+.-.|+.|+. ..|.|+|.+|..++|++.-+|.++=.+-
T Consensus 11 PsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 11 PSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 33445678865 4689999999999999999999875444
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=89.81 E-value=0.43 Score=37.26 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=30.6
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
++|++|+|.+.+|..++|+..|+|....|+|...
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3789999998889999999999999999999754
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=89.04 E-value=0.35 Score=35.31 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=27.1
Q ss_pred cHhhhcCCeEEEEE----cCCcEEEEEEEEEcCccceEe
Q 032889 42 DLAKFVDKGVQVKL----TGGRQVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 42 ~L~~~l~k~V~V~L----~dGr~i~G~L~~fD~~mNLVL 76 (131)
+..+++|+.|.|++ .+.+.++|+|.++|.- .++|
T Consensus 98 df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 98 AVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp HHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred HHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 35678999999999 4558999999999964 3444
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=87.55 E-value=1.6 Score=27.77 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=30.9
Q ss_pred hhh-cCCeEEEEEcCCcEEEEEEEEEcCccceE-ecceEEEeec
Q 032889 44 AKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLV-LDEAVEFLRD 85 (131)
Q Consensus 44 ~~~-l~k~V~V~L~dGr~i~G~L~~fD~~mNLV-L~da~E~~~~ 85 (131)
.+| +|..|.++-+||+.|-|+++...+..=+| .+|-.|.|..
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 455 89999999999999999997766444333 3666666653
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=84.21 E-value=0.74 Score=34.97 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.7
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
+|++|+|...++ ++|+..|+|....|+|.+.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEEC
Confidence 789999876554 9999999999999999753
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=82.53 E-value=2.7 Score=33.19 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=28.4
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
++|++|+|... +..++|+..|+|....|+|.+.
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 37899999875 5589999999999999999753
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=80.42 E-value=3.4 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=28.5
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
++|++|+|...++..++|+..|+|....|+ .+
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 389999999888777999999999999999 64
No 47
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=74.93 E-value=14 Score=25.00 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=47.7
Q ss_pred hhhcCCeEEEEEcCCc-EEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 44 AKFVDKGVQVKLTGGR-QVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 44 ~~~l~k~V~V~L~dGr-~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
.+|+|+-|.|...+.- .|.|.+...|+ -+|.|.++...-.. -+.....|.+|-..|..+..++
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrNGip---------lk~~~~EVtLsa~DI~~L~IIe 71 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRNGVP---------LRKQNAEVVLKCTDIRSIDLIE 71 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEETTEE---------CSCSSSCEEEETTTEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhcCcC---------cCCCCceEEEEecchhheeeec
Confidence 5899999999998876 99999999995 45999998753210 1233456888888888777654
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=72.17 E-value=2.9 Score=31.77 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
+|++|+|...++ ++|+..|+|....|++.+
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999987766 999999999999999975
No 49
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=71.26 E-value=4.2 Score=27.29 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=16.4
Q ss_pred CeEEEEEcCCcEEEEEEE
Q 032889 49 KGVQVKLTGGRQVTGTLK 66 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~ 66 (131)
.+|++.|.||+.+.|++.
T Consensus 29 ~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp CEEEEEETTSCEEEEEES
T ss_pred eEEEEEEcCCCeEeeeec
Confidence 689999999999999974
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.75 E-value=5.2 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.0
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
++|++|+|.. ++..++|+..|+|....|+|++
T Consensus 277 ~~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 3789999976 4668999999999999999974
No 51
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=68.96 E-value=6.5 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.6
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecc
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE 78 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~d 78 (131)
++|++|+| +| ++|+..|+|....|+++.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 37899999 45 999999999999999975
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=63.44 E-value=10 Score=23.21 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.6
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCcc---ceEecceEEEee
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQLL---NLVLDEAVEFLR 84 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~m---NLVL~da~E~~~ 84 (131)
.|..|.+.-+||+-|-|+++.+|+.- =+...|-.+.+.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 57889999999999999999998652 344455555543
No 53
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=62.00 E-value=2.6 Score=32.32 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=40.9
Q ss_pred eEEEEEEecc--cccccccccccccccccCccCcccH-hhhcCCeEEEEE--cCCcEEEEEEEEEc
Q 032889 9 AVSFFIVCRS--ARVSFNLGFLKSLKMSGRKETVLDL-AKFVDKGVQVKL--TGGRQVTGTLKGYD 69 (131)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~~~~~~~~m~~~~~~~l~L-~~~l~k~V~V~L--~dGr~i~G~L~~fD 69 (131)
-+||||+-++ |+-+|... ....+...+-..|+++ .++.++|+.|.. +||.....++.+.+
T Consensus 3 iy~~yi~~~~~~liy~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~n 67 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSY-APRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGHAVLAIN 67 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC-----CEEEEECSSCSSEEEECSSSEEEEECCCTTCCTTCEEEEET
T ss_pred EEEEEEEecCCceEEecccC-CCCcceeeeccCCcceeeeeccceeEEeecccCCccccceeeecC
Confidence 4799999998 66555532 2344444456678887 478999999977 78877777777765
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=49.57 E-value=23 Score=22.16 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=28.2
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCc---cceEecceEEEe
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQL---LNLVLDEAVEFL 83 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~---mNLVL~da~E~~ 83 (131)
.|..|+..-.||+.|.|++..+|+. +=+...|..+.+
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w 55 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSW 55 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEE
Confidence 7889999999999999999999964 333334555444
No 55
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=47.24 E-value=25 Score=28.66 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=28.0
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|.+.||+.+.+++++.|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999999887655
No 56
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=46.48 E-value=26 Score=28.81 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=28.1
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
.++.|.+.||+.+.++++++|....|.|=.+.
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 47999999999999999999999998876543
No 57
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=44.05 E-value=28 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred cHhhhcCCeEEEEEcCCc----EEEEEEEEEcCccceEe
Q 032889 42 DLAKFVDKGVQVKLTGGR----QVTGTLKGYDQLLNLVL 76 (131)
Q Consensus 42 ~L~~~l~k~V~V~L~dGr----~i~G~L~~fD~~mNLVL 76 (131)
+|..++|++|.++.+.|| +-.|+|... |=++-.
T Consensus 19 ~l~~~vG~~V~l~An~GRkK~~er~GvL~et--YPSvFv 55 (90)
T 3fb9_A 19 EIKAHEGQVVEMTLENGRKRQKNRLGKLIEV--YPSLFI 55 (90)
T ss_dssp HHHHTTTSEEEEEECCSSSCCSCEEEEEEEE--CSSEEE
T ss_pred HHHHcCCCEEEEEecCCcccEEEEEEEEEEe--cCcEEE
Confidence 577899999999999998 467988765 444443
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=42.78 E-value=28 Score=24.09 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.4
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYD 69 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD 69 (131)
+|.+|+.+-++||.|.|++++..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 78999999999999999999876
No 59
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=39.21 E-value=31 Score=22.70 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=36.3
Q ss_pred ccccccccccccccccccc--Ccc---CcccHhhhcCCeEEEEEcCCcEEEEEEEEEc
Q 032889 17 RSARVSFNLGFLKSLKMSG--RKE---TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYD 69 (131)
Q Consensus 17 ~~~~~~~~~~~~~~~~m~~--~~~---~~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD 69 (131)
.+.+++|+-+...+.+-.+ +.+ ..-+-.-|+||+|--..+.|+.+-|++.---
T Consensus 4 Kg~~~gykRg~~nQ~~~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~H 61 (87)
T 3j21_c 4 KGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVH 61 (87)
T ss_dssp EEEEEEESCCSSCCCTTCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEEC
T ss_pred eEEEEecccccCcCCCCeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeee
Confidence 4467788877777664332 222 2334456899999988899999999887643
No 60
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=39.11 E-value=22 Score=23.83 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=37.4
Q ss_pred ccccccccccccccccccc--C---ccCcccHhhhcCCeEEEEEcCCcEEEEEEEEEcCc
Q 032889 17 RSARVSFNLGFLKSLKMSG--R---KETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQL 71 (131)
Q Consensus 17 ~~~~~~~~~~~~~~~~m~~--~---~~~~l~L~~~l~k~V~V~L~dGr~i~G~L~~fD~~ 71 (131)
.+.+++|+-+...+..-.+ + ....-+-..|+||+|--.-+.+|.+-|++.---.-
T Consensus 4 Kgv~lgYkRg~~nQ~~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGn 63 (95)
T 1sqr_A 4 KGVVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGT 63 (95)
T ss_dssp EEEEEEEECCSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSS
T ss_pred eEEEEeeccccCcCCCceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCC
Confidence 4566788877766654321 2 22233445689999998889999999998865443
No 61
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=37.97 E-value=37 Score=26.77 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.2
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|.+.||+.+.+++.+.|....|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4789999999999999999999988877554
No 62
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=35.94 E-value=40 Score=25.31 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|.+.||+.+.+.+++.|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4789999999999999999999888876554
No 63
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=35.81 E-value=25 Score=22.72 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.4
Q ss_pred hh-cCCeEEEEEcCCcEEEEEEEEEcCc---cceEecceEEEee
Q 032889 45 KF-VDKGVQVKLTGGRQVTGTLKGYDQL---LNLVLDEAVEFLR 84 (131)
Q Consensus 45 ~~-l~k~V~V~L~dGr~i~G~L~~fD~~---mNLVL~da~E~~~ 84 (131)
+| .|.-|.++-+||+.|-|+++-+|.. +=+..+|-.+.|.
T Consensus 26 ~f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CCCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 44 8899999999999999999998853 3344455555553
No 64
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=34.72 E-value=35 Score=28.05 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|.+.||+.+.++++++|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 5789999999999999999999999887665
No 65
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.91 E-value=3.1 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.8
Q ss_pred EEEEEEEcCccceEecceE
Q 032889 62 TGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 62 ~G~L~~fD~~mNLVL~da~ 80 (131)
.|++.+||+-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 3568999999999999986
No 66
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=32.86 E-value=59 Score=23.80 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.4
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
.++.|.+.+|+.+.+++.++|....|-|=...
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~ 108 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKIN 108 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 57899999999999999999998888775543
No 67
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=32.43 E-value=31 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=17.8
Q ss_pred hcCCeEEEEEcCCcEEEEEEEE
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKG 67 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~ 67 (131)
.+|..|+|++..|+.+.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 5778888888888888888765
No 68
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=32.09 E-value=61 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 48 ~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
..++.|.+.+|+.+.+++.++|....|-|=...
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 357899999999999999999998888775543
No 69
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=31.74 E-value=59 Score=24.99 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=27.4
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
.++.|.+.+|+.+.+++.++|...+|.|=...
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~ 97 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLIIK 97 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEEe
Confidence 36899999999999999999999888876543
No 70
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=31.43 E-value=59 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.3
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
.++.|.+.+|+.+.+++.++|....|-|=...
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~ 102 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEEc
Confidence 47899999999999999999998888775543
No 71
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=31.08 E-value=52 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 48 DKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 48 ~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
..+++|.+.||+.+.+++.++|...+|-|=...
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 357999999999999999999998888775543
No 72
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=28.49 E-value=23 Score=23.06 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=34.1
Q ss_pred hcCCeEEEEEcCCcEEEEEEEEEcCccceEecceEEEeecCCCCCccCcceEEeceEEEeCCcEEEEeeCC
Q 032889 46 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTD 116 (131)
Q Consensus 46 ~l~k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~E~~~~~~~~~~~~~~~r~lg~v~IRG~~Iv~I~~~d 116 (131)
..+.+++|+++||..+.|+.. | +...+-.|+..- ...-+...||=+.|.++.-+.
T Consensus 23 ~~~~~l~l~l~dGe~~~g~a~--D----~~~~~k~E~L~l----------~~~~~~~~irLD~I~s~~~p~ 77 (86)
T 1sg5_A 23 QHHLMLTLELKDGEKLQAKAS--D----LVSRKNVEYLVV----------EAAGETRELRLDKITSFSHPE 77 (86)
T ss_dssp TTTTCEEEECTTTCCEEESSC--E----EECCSSSCEEEE----------EETTEEEEESTTCCSEEEETT
T ss_pred HcCCeEEEEEeCCCEEEEEEE--e----eEEcCceEEEEE----------EcCCCEEEEEchhhhhcCCCC
Confidence 467899999999999988543 2 233333344321 112245568888888885443
No 73
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.86 E-value=72 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.1
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYD 69 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD 69 (131)
.|..|.|.-.||..|.|++.|.-
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 67899999999999999999974
No 74
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.64 E-value=95 Score=19.42 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCc---cceEecceEEEee
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQL---LNLVLDEAVEFLR 84 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~---mNLVL~da~E~~~ 84 (131)
.|.-|...-+||+.|-|+++..|.+ +=+...|..+.+.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv 52 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 52 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeee
Confidence 6788999999999999999999953 3344466666654
No 75
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=26.46 E-value=41 Score=20.93 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=18.6
Q ss_pred CeEEEEEcCCcEEEEEEEEEcC
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQ 70 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~ 70 (131)
.+|+|++.||+.+.+++..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 4789999999999999987664
No 76
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.41 E-value=99 Score=19.07 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.5
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEcCc---cceEecceEEEee
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYDQL---LNLVLDEAVEFLR 84 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD~~---mNLVL~da~E~~~ 84 (131)
.|.-|...-+||+.|-|+++.+|.. +=+...|..+.+.
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv 50 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWV 50 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeEE
Confidence 6788999999999999999999954 4455566666554
No 77
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=25.47 E-value=79 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred cCCeEEEEEcCCcEEEEEEEEEc
Q 032889 47 VDKGVQVKLTGGRQVTGTLKGYD 69 (131)
Q Consensus 47 l~k~V~V~L~dGr~i~G~L~~fD 69 (131)
.|..|.|.-.||..|.|+++|.-
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~~ 88 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVASH 88 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEeeeEEecee
Confidence 67899999999999999999854
No 78
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=24.13 E-value=85 Score=24.46 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.5
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecceE
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAV 80 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da~ 80 (131)
.++.|.+.+|+.+.+.+.++|....|-|=...
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl~ 108 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRID 108 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEECC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEEc
Confidence 57899999999999999999998888775543
No 79
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=23.83 E-value=1.2e+02 Score=23.41 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.0
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 4689999999999999999999888877544
No 80
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=23.37 E-value=70 Score=27.25 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=26.2
Q ss_pred CeEEEEEc-CCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLT-GGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~-dGr~i~G~L~~fD~~mNLVL~da 79 (131)
.++.|++. ||+.+.+++++.|....|-|=.+
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv 128 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEEE
Confidence 46888885 99999999999999988877543
No 81
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=22.57 E-value=71 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.5
Q ss_pred CcEEEEEEEEEcCccceEec
Q 032889 58 GRQVTGTLKGYDQLLNLVLD 77 (131)
Q Consensus 58 Gr~i~G~L~~fD~~mNLVL~ 77 (131)
+..++|.+.-+|.|.|++..
T Consensus 171 ~~~i~g~V~~iD~FGN~iTn 190 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILN 190 (259)
T ss_dssp TTEEEEEEEEECTTCCEEES
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45789999999999999864
No 82
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=21.56 E-value=74 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.5
Q ss_pred CcEEEEEEEEEcCccceEec
Q 032889 58 GRQVTGTLKGYDQLLNLVLD 77 (131)
Q Consensus 58 Gr~i~G~L~~fD~~mNLVL~ 77 (131)
+..++|.+.-+|.|.|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 55789999999999999864
No 83
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=20.55 E-value=72 Score=25.12 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=17.5
Q ss_pred hcCCeEEEE-EcCCcEEEEEEEE
Q 032889 46 FVDKGVQVK-LTGGRQVTGTLKG 67 (131)
Q Consensus 46 ~l~k~V~V~-L~dGr~i~G~L~~ 67 (131)
.+|..|+|+ +..|+.+.|++.+
T Consensus 238 a~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 238 YLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEec
Confidence 588999999 9999999998764
No 84
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=20.20 E-value=1.8e+02 Score=20.31 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=22.6
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCccceEecce
Q 032889 49 KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA 79 (131)
Q Consensus 49 k~V~V~L~dGr~i~G~L~~fD~~mNLVL~da 79 (131)
..++|++ ||+.+.++++ +|+...|.|=..
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv 71 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFITC 71 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEEEC
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEEEe
Confidence 3577888 9999999999 898777665443
Done!