Citrus Sinensis ID: 032889

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
MQAFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA
cccEEEEcEEEEEEEEEccccccHHHHHHHHHcccccccccHHHHHcccEEEEECcccEEEEEEEEEEccccccccccEEEEEccccccccccccCEEEEEEEEEcccEEEEECccccCCccccccccccc
**AFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIAN*FM*****
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MQAFVEINAVSFFIVCRSARVSFNLGFLKSLKMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Probable U6 snRNA-associated Sm-like protein LSm7 Binds specifically to the 3'-terminal U-tract of U6 snRNA.probableQ54HF6
U6 snRNA-associated Sm-like protein LSm7 Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner.probableO74499
U6 snRNA-associated Sm-like protein LSm7 Binds specifically to the 3'-terminal U-tract of U6 snRNA.probableQ9UK45

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4EMK, chain C
Confidence level:very confident
Coverage over the Query: 47-83,94-114
View the alignment between query and template
View the model in PyMOL