BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032890
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 225 bits (573), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 106/131 (80%), Positives = 114/131 (87%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSL
Sbjct: 1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVE 120
APTGLHLGGTKYMVIQGEPGAVIR QALI GIYDEPLTPGQCNMIVE
Sbjct: 61 APTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKRTGQALIIGIYDEPLTPGQCNMIVE 120
Query: 121 RLGDYLIDQGL 131
RLGDYL+DQGL
Sbjct: 121 RLGDYLLDQGL 131
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 208 bits (529), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 2/133 (1%)
Query: 1 MSWQTYVDDHLMCDIDGH--HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPG 58
MSWQTYVD+HLMCDIDG L ++AIVGHDGSVWAQSS+FPQFKP+EI IMKDFEEPG
Sbjct: 1 MSWQTYVDEHLMCDIDGQGEELAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60
Query: 59 SLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMI 118
LAPTGLHLGG KYMVIQGE GAVIR QAL+FGIY+EP+TPGQCNM+
Sbjct: 61 HLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
Query: 119 VERLGDYLIDQGL 131
VERLGDYLIDQGL
Sbjct: 121 VERLGDYLIDQGL 133
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 103/131 (78%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
MSWQ+YVDDHLMCD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI I KDFEEPG L
Sbjct: 1 MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVE 120
APTGL LGG KYMVIQGE GAVIR QAL+FG YDEP+T GQCN++VE
Sbjct: 61 APTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVE 120
Query: 121 RLGDYLIDQGL 131
RLGDYLI+ L
Sbjct: 121 RLGDYLIESEL 131
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/130 (66%), Positives = 99/130 (76%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQ+YVDDHL CD++G+HLT+AAI+G DGSVWAQS+ FPQ KP+EI I KDFEEPG LA
Sbjct: 1 SWQSYVDDHLXCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLA 60
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVER 121
PTGL LGG KY VIQGE GAVIR QAL+FG YDEP T GQCN++VER
Sbjct: 61 PTGLFLGGEKYXVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPXTGGQCNLVVER 120
Query: 122 LGDYLIDQGL 131
LGDYLI+ L
Sbjct: 121 LGDYLIESEL 130
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L+ +T AAI+GHDG+ WA S+ F P AA+ F++ ++
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAIIGHDGNTWATSAGFA-VSPANGAALANAFKDATAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVER 121
G L GT+Y+ I+ + +V +A++ G+Y+E + PG +VE+
Sbjct: 57 SNGFELAGTRYVTIRADDRSVY-GKKGSAGVITVKTSKAILIGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L+ +T AAI+G DG+ WA S+ F P + + F ++
Sbjct: 1 SWQTYVDTNLVGT---GAVTQAAILGLDGNTWATSAGFA-VTPAQGTTLAGAFNNADAIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVER 121
G L G Y+ ++ + + I +A++ G+Y+E + PG +VE+
Sbjct: 57 AGGFDLAGVHYVTLRADDRS-IYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLA 61
SWQTYVD +L + +T AAI+G DG+ WA S+ F P + + F +
Sbjct: 1 SWQTYVDTNL---VGTGAVTQAAILGLDGNTWATSAGFA-VTPAQGQTLASAFNNADPIR 56
Query: 62 PTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVER 121
+G L G Y+ ++ + + I ++++ G+Y+E + PG +VE+
Sbjct: 57 ASGFDLAGVHYVTLRADDRS-IYGKKGSAGVITVKTSKSILVGVYNEKIQPGTAANVVEK 115
Query: 122 LGDYLIDQGL 131
L DYLI QG
Sbjct: 116 LADYLIGQGF 125
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGS 59
MSWQ YVD L+ + AAIV G SVWA S+ F P+EI + F++P S
Sbjct: 1 MSWQAYVDTSLLGT---GKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPS 56
Query: 60 LAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIV 119
+ TG+ L G KY+ I+ E G I ++ Y E PG+ I
Sbjct: 57 MFGTGIILAGQKYITIRAE-GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKIT 115
Query: 120 ERLGDYLIDQG 130
E L DYL+ G
Sbjct: 116 EALADYLVGVG 126
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSL 60
SWQ Y D+ I + A I G +VWA S +P EI I++ F+ P L
Sbjct: 1 SWQAYTDNL----IGTGKVDKAVIYSRAGDAVWATSGGLS-LQPNEIGEIVQGFDNPAGL 55
Query: 61 APTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVE 120
GLH+ G K+M+++ + + I Q +I Y + G+ IVE
Sbjct: 56 QSNGLHIQGQKFMLLRADDRS-IYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVE 114
Query: 121 RLGDYLI 127
+L DYLI
Sbjct: 115 QLADYLI 121
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 27 GHDGSVWAQSSNF-PQFKPEEIAAIMKDFEEPGSLAPTGLHLGG 69
GH S W + N+ PQ E +A ++++ PG+ G+ LGG
Sbjct: 115 GHGHSAWREDGNYSPQLNSETLAPVLREL-APGAEFVVGMSLGG 157
>pdb|3A9G|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Apo-Form
pdb|3A9H|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Holo-Form
Length = 354
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
Query: 41 QFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVI 83
+FK E+A+ D E P S+AP LGG +Y+V + PG ++
Sbjct: 18 KFKISEVAS---DLEVPWSIAP----LGGGRYLVTE-RPGRLV 52
>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1128
Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 24 AIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGL 65
A V H GS+ + F + +E+A ++ D +PG L P L
Sbjct: 330 AAVSHAGSMHRERRKFLRSALKELATVLSD--QPGLLGPKAL 369
>pdb|3NEC|A Chain A, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|B Chain B, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|C Chain C, Crystal Structure Of Toxoplasma Gondii Profilin
pdb|3NEC|D Chain D, Crystal Structure Of Toxoplasma Gondii Profilin
Length = 166
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 48 AAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80
A+ +K + GS AP G+ +GG KY V++ E G
Sbjct: 73 ASTIKAAVDDGS-APNGVWIGGQKYKVVRPEKG 104
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 26.2 bits (56), Expect = 6.1, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 13 CDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLG 68
C +DG AA++G + F + + + +K EP +AP G +G
Sbjct: 328 CHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVG 383
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|B Chain B, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|C Chain C, Crystal Structure Of Isochorismatase Family Protein
pdb|2A67|D Chain D, Crystal Structure Of Isochorismatase Family Protein
Length = 167
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 15 IDGHHLTSAAIVGHDGSVWA 34
+D HLT+A I+ H ++WA
Sbjct: 139 LDNGHLTAAQIIQHHEAIWA 158
>pdb|4EXL|A Chain A, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|B Chain B, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|C Chain C, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|D Chain D, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1) From
Streptococcus Pneumoniae Canada Mdr_19a
Length = 265
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 5 TYVDDHLMC-DIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF 54
TY+DD + ++G+ L+ I ++ +W+ + +P E+AA +F
Sbjct: 176 TYIDDSVKSMKLNGYDLSPENISSNNWPLWSYEHMYTLGQPNELAAEFLNF 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,231,280
Number of Sequences: 62578
Number of extensions: 145406
Number of successful extensions: 326
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 16
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)