Query 032890
Match_columns 131
No_of_seqs 104 out of 432
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9y_A Profilin; yeast, actin- 100.0 4.9E-51 1.7E-55 282.3 14.3 126 1-131 1-127 (127)
2 3nul_A Profilin I; cytoskeleto 100.0 1.8E-49 6.2E-54 275.4 17.3 130 2-131 1-130 (130)
3 1acf_A Profilin I; protein bin 100.0 1.3E-48 4.3E-53 269.5 14.3 125 2-131 1-125 (125)
4 1ypr_A Profilin; actin-binding 100.0 1.8E-48 6.3E-53 268.7 14.2 124 2-131 1-125 (125)
5 2v8f_A Profilin-2, profilin II 100.0 4.7E-46 1.6E-50 261.0 13.7 125 1-131 1-140 (140)
6 3nec_A Profilin, inflammatory 100.0 8.3E-45 2.8E-49 260.6 9.8 126 1-131 4-166 (166)
7 2pbd_P Profilin-1, profilin I; 100.0 1.3E-43 4.6E-48 248.3 14.0 124 2-131 1-139 (139)
8 2jkg_A Profilin; proline-rich 100.0 1.8E-44 6E-49 259.1 9.4 126 1-131 5-171 (179)
9 3leq_A Uncharacterized protein 95.4 0.11 3.6E-06 34.8 8.1 107 9-127 10-121 (126)
10 1vet_B P14, late endosomal/lys 94.2 0.23 7.7E-06 33.2 7.2 99 19-128 18-117 (125)
11 1j3w_A Giding PROTEIN-MGLB; gl 92.1 0.57 2E-05 32.6 6.8 104 10-128 22-135 (163)
12 3kye_A Roadblock/LC7 domain, R 86.6 0.74 2.5E-05 31.8 3.9 98 19-126 40-138 (150)
13 3t12_B Gliding protein MGLB; G 58.4 23 0.00078 23.6 5.3 100 19-128 25-132 (136)
14 2jmk_A Hypothetical protein TA 48.1 39 0.0013 21.4 4.7 38 91-131 67-105 (111)
15 4g29_A Secreted effector prote 41.4 20 0.00068 25.3 2.8 21 111-131 38-58 (186)
16 3rfo_A Methionyl-tRNA formyltr 39.2 1.2E+02 0.0042 22.8 7.4 37 38-78 216-252 (317)
17 2bln_A Protein YFBG; transfera 35.8 1E+02 0.0036 23.0 6.4 38 38-78 209-246 (305)
18 2c71_A Glycoside hydrolase, fa 35.1 53 0.0018 23.0 4.4 28 104-131 153-180 (216)
19 3tqq_A Methionyl-tRNA formyltr 34.8 1.1E+02 0.0038 23.0 6.4 37 38-78 214-250 (314)
20 1p3h_A 10 kDa chaperonin; beta 32.9 25 0.00087 22.3 2.1 18 61-78 74-91 (99)
21 1pcq_O Groes protein; chaperon 32.3 27 0.00091 22.1 2.1 18 61-78 72-89 (97)
22 1fmt_A Methionyl-tRNA FMet for 32.1 1.6E+02 0.0055 22.0 7.4 37 38-78 215-251 (314)
23 3q0i_A Methionyl-tRNA formyltr 31.8 1.2E+02 0.0041 22.8 6.2 37 38-78 219-255 (318)
24 3nx6_A 10KDA chaperonin; bacte 31.5 37 0.0013 21.3 2.7 18 61-78 71-88 (95)
25 2z8u_A Tata-box-binding protei 29.1 79 0.0027 22.2 4.4 37 91-131 60-96 (188)
26 3eik_A Tata-box-binding protei 28.3 81 0.0028 22.8 4.4 36 92-131 91-126 (218)
27 2k49_A UPF0339 protein SO_3888 27.4 1.3E+02 0.0044 19.5 5.8 52 25-78 19-73 (118)
28 2wj8_A Nucleoprotein; RNA bind 26.8 22 0.00074 27.5 1.1 29 102-130 333-361 (391)
29 2e5z_A SFRS8 protein, splicing 26.4 47 0.0016 20.6 2.5 20 111-130 20-39 (90)
30 1we3_O CPN10(groes); chaperoni 25.0 35 0.0012 21.7 1.7 18 61-78 76-93 (100)
31 2cc0_A Acetyl-xylan esterase; 24.9 76 0.0026 21.6 3.7 19 113-131 159-177 (195)
32 1z7e_A Protein aRNA; rossmann 24.7 2.4E+02 0.0081 23.0 7.2 38 38-78 209-246 (660)
33 4evm_A Thioredoxin family prot 23.9 1.1E+02 0.0036 18.3 4.0 34 19-54 104-137 (138)
34 2eap_A Lymphocyte cytosolic pr 23.6 25 0.00086 22.0 0.8 12 120-131 25-36 (90)
35 2d0s_A Cytochrome C, cytochrom 22.5 73 0.0025 17.9 2.8 20 37-56 58-77 (79)
36 1mp9_A Tata-binding protein; t 22.3 1.9E+02 0.0066 20.3 5.4 36 92-131 61-96 (198)
37 2w3z_A Putative deacetylase; P 22.0 1.5E+02 0.005 22.1 5.0 31 100-131 275-305 (311)
38 1ais_A TBP, protein (tata-bind 21.9 1.3E+02 0.0045 20.8 4.4 37 91-131 56-92 (182)
39 1ytb_A Protein (tata binding p 21.6 1.4E+02 0.005 20.6 4.6 36 92-131 53-88 (180)
40 1zgh_A Methionyl-tRNA formyltr 20.4 2.6E+02 0.0088 20.5 6.5 38 38-78 203-241 (260)
No 1
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=4.9e-51 Score=282.25 Aligned_cols=126 Identities=40% Similarity=0.726 Sum_probs=122.5
Q ss_pred CChHHHhhccccccccccccceeEEEcCCC-CeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCC
Q 032890 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (131)
Q Consensus 1 MSW~~yv~~~L~~~~~g~~~~~aaI~g~dG-~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~ 79 (131)
||||+|||++|++ ++ ++++|||+|+|| ++||+|++| +++|+|++.|++.|+||+.++.+||+|+|+||+++|.|
T Consensus 1 MSWq~Yvd~~L~~--~~-~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d- 75 (127)
T 3d9y_A 1 MSWQAYVDTSLLG--TG-KIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE- 75 (127)
T ss_dssp -CHHHHHHTTTGG--GS-SCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-
T ss_pred CCHHHHHHHhhcc--cC-ceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-
Confidence 9999999999999 98 999999999999 799999999 99999999999999999888899999999999999999
Q ss_pred CceEEEEcCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 80 GAVIRGKKGSGGVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 80 ~~~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+++||+||+++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 76 ~~~i~~kkg~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 76 GRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp SSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEcCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999999999999999999999998
No 2
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=1.8e-49 Score=275.36 Aligned_cols=130 Identities=77% Similarity=1.329 Sum_probs=123.9
Q ss_pred ChHHHhhccccccccccccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCCc
Q 032890 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (131)
Q Consensus 2 SW~~yv~~~L~~~~~g~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~~ 81 (131)
|||+|||++|+++.+|+++++|||+|+||++||+|++|++++|+|++.|++.|+||+.++.+||+|+|+||+++|.|+++
T Consensus 1 SWq~YVd~~L~~~~~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~ 80 (130)
T 3nul_A 1 SWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGA 80 (130)
T ss_dssp CHHHHHHHTTSCCBTTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTT
T ss_pred CHHHHHHhhhcccccCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCCc
Confidence 89999998899843334899999999999999999999999999999999999999999999999999999999998778
Q ss_pred eEEEEcCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 82 VIRGKKGSGGVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 82 ~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+||+||+++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 81 ~i~~kkg~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 81 VIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999998
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=1.3e-48 Score=269.50 Aligned_cols=125 Identities=41% Similarity=0.791 Sum_probs=122.4
Q ss_pred ChHHHhhccccccccccccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCCc
Q 032890 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (131)
Q Consensus 2 SW~~yv~~~L~~~~~g~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~~ 81 (131)
|||+|||++|++ +| ++++|||+++||++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| ++
T Consensus 1 SWq~yvd~~L~~--~g-~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~ 75 (125)
T 1acf_A 1 SWQTYVDTNLVG--TG-AVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR 75 (125)
T ss_dssp CHHHHHHTTTGG--GT-SCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred ChHHHHHhhhhh--CC-CcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-Cc
Confidence 899999988999 99 999999999999999999999 99999999999999999888899999999999999999 99
Q ss_pred eEEEEcCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 82 VIRGKKGSGGVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 82 ~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+||+|++++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 76 ~i~~kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 76 SIYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp EEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999998
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=1.8e-48 Score=268.69 Aligned_cols=124 Identities=35% Similarity=0.722 Sum_probs=121.4
Q ss_pred ChHHHhhccccccccccccceeEEEcCCC-CeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCC
Q 032890 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (131)
Q Consensus 2 SW~~yv~~~L~~~~~g~~~~~aaI~g~dG-~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~ 80 (131)
|||+|||+ |++ +| ++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++.+||+|+|+||+++|.| +
T Consensus 1 SWq~yvd~-L~~--~g-~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~ 74 (125)
T 1ypr_A 1 SWQAYTDN-LIG--TG-KVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D 74 (125)
T ss_dssp CHHHHHHH-HHH--TS-SCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred ChHHHHHH-Hhc--CC-CccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-C
Confidence 89999996 999 99 999999999999 999999999 99999999999999999888899999999999999999 9
Q ss_pred ceEEEEcCCCcEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 81 AVIRGKKGSGGVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 81 ~~i~~kk~~~G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
++||+||+++|++++||+++||||+|+++++|++|+++||+|||||+++||
T Consensus 75 ~~i~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 75 RSIYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp SEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999998
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=4.7e-46 Score=260.97 Aligned_cols=125 Identities=38% Similarity=0.644 Sum_probs=119.7
Q ss_pred CC-hHHHhhccccccccccccceeEEEcCCC--CeEEecCC--CCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEE
Q 032890 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVI 75 (131)
Q Consensus 1 MS-W~~yv~~~L~~~~~g~~~~~aaI~g~dG--~~wA~s~~--f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~ 75 (131)
|| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+||+|+|+||+++
T Consensus 1 MS~Wq~yvd~-L~~--~g-~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~i 74 (140)
T 2v8f_A 1 MAGWQSYVDN-LMC--DG-CCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVI 74 (140)
T ss_dssp -CTTHHHHHH-HHT--TS-CEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEE
T ss_pred CchHHHHHHH-Hhc--cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEE
Confidence 99 9999996 999 99 999999999999 99999999 9899999999999 7 899888899999999999999
Q ss_pred Ee----CCCce--EEEEcCCCc----EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 76 QG----EPGAV--IRGKKGSGG----VTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 76 r~----d~~~~--i~~kk~~~G----~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
|. |++++ +|+|++++| ++++||+++|||++|+++++|++|+++||+|||||+++||
T Consensus 75 r~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 75 RDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp EEETTSTTTCEEEEEECCCSSSCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ecccccCCCceEEEEEecCCCCCceeEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99 76788 999999999 9999999999999999999999999999999999999998
No 6
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=100.00 E-value=8.3e-45 Score=260.65 Aligned_cols=126 Identities=27% Similarity=0.509 Sum_probs=117.8
Q ss_pred CC-hHHHhhccccccccccccceeEEEc-CCCCeEEecCCC------------------------CCCCHHHHHHHHHHc
Q 032890 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNF------------------------PQFKPEEIAAIMKDF 54 (131)
Q Consensus 1 MS-W~~yv~~~L~~~~~g~~~~~aaI~g-~dG~~wA~s~~f------------------------~~i~~~E~~~i~~~f 54 (131)
|| ||+|||++|++ +| +|++|||+| .||++||+|++| ++++|+|+++|+++|
T Consensus 4 MS~Wq~YVd~~L~~--~g-~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f 80 (166)
T 3nec_A 4 MSDWDPVVKEWLVD--TG-YCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAV 80 (166)
T ss_dssp -CCCHHHHHHHHTT--TS-SCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred ccHHHHHHHHHhhc--cC-ceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHh
Confidence 99 99999989999 88 999999999 699999999998 367999999999999
Q ss_pred CCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEEcCCCcEEEEecCc-EEEEEEeCCC--CCcchHHHHHHHHH
Q 032890 55 EEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKGSGGVTVKKTGQ-ALIFGIYDEP--LTPGQCNMIVERLG 123 (131)
Q Consensus 55 ~~~~~~~~~gi~~~g~KY~v~r~d~~--------~~i~~kk~~~G~~i~kt~~-~ivI~~~~~~--~~~~~~~~~v~~lA 123 (131)
+++ ++++||+|+|+||+++|.|++ +++++||+++|++++||++ +||||+|+++ ++|++|+++|++||
T Consensus 81 ~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~la 158 (166)
T 3nec_A 81 DDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFA 158 (166)
T ss_dssp HHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHH
T ss_pred hcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHH
Confidence 884 478999999999999999843 6799999999999999999 9999999999 89999999999999
Q ss_pred HHHHhCCC
Q 032890 124 DYLIDQGL 131 (131)
Q Consensus 124 ~yL~~~gy 131 (131)
|||+++||
T Consensus 159 dYL~~~GY 166 (166)
T 3nec_A 159 EYLHQSGY 166 (166)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99999998
No 7
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=100.00 E-value=1.3e-43 Score=248.29 Aligned_cols=124 Identities=33% Similarity=0.539 Sum_probs=118.7
Q ss_pred C-hHHHhhccccccccccccceeEEEcCCC--CeEEecCC--CCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEE
Q 032890 2 S-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQ 76 (131)
Q Consensus 2 S-W~~yv~~~L~~~~~g~~~~~aaI~g~dG--~~wA~s~~--f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r 76 (131)
| ||+|||+ |++ +| +|++|||+|+|| ++||+|++ |++++|+|++.|+ . +||+.++.+|++|+|+||+++|
T Consensus 1 s~Wq~Yvd~-L~~--~g-~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir 74 (139)
T 2pbd_P 1 AGWNAYIDN-LMA--DG-TCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIR 74 (139)
T ss_dssp CCSHHHHHH-HHT--TS-CEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEE
T ss_pred CchHHHHHH-Hhc--cC-CcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEe
Confidence 5 9999996 999 98 999999999999 99999999 9899999999999 6 7888888999999999999999
Q ss_pred e----CCCceE--EEEcCCCc----EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 77 G----EPGAVI--RGKKGSGG----VTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 77 ~----d~~~~i--~~kk~~~G----~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
. |+++++ ++|++++| ++++||+++|||++|+++++|++|+++|++|||||+++||
T Consensus 75 ~~~~~d~~~~id~~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 75 DSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EETTCTTTCEEEEEECCSTTCCCCEEEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCcEEeeeeccCCCCCceEEEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9 757788 99999999 9999999999999999999999999999999999999998
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=100.00 E-value=1.8e-44 Score=259.09 Aligned_cols=126 Identities=29% Similarity=0.519 Sum_probs=118.3
Q ss_pred CChHHHhhccccccccccccceeEEEcC-CCCeEEecC------------------CCC-CC----------CHHHHHHH
Q 032890 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSS------------------NFP-QF----------KPEEIAAI 50 (131)
Q Consensus 1 MSW~~yv~~~L~~~~~g~~~~~aaI~g~-dG~~wA~s~------------------~f~-~i----------~~~E~~~i 50 (131)
||||+|||++|++ +| +|+.|||++. ||++||+|+ +|+ ++ +|+|+.+|
T Consensus 5 mSWq~YVd~~Ll~--tG-~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I 81 (179)
T 2jkg_A 5 YSWDSYLNDRLLA--TN-QVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTI 81 (179)
T ss_dssp CCHHHHHHHHTGG--GS-SCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHH
T ss_pred ccHHHHHHHhhhh--cC-CEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHH
Confidence 9999999988999 99 9999999999 999999999 774 57 89999999
Q ss_pred HHHcCCCCCCCccceEEcCeEEEEEEeCCC--------ceEEEEcCCCcEEEEec-CcEEEEEEeCCC--CCcchHHHHH
Q 032890 51 MKDFEEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKGSGGVTVKKT-GQALIFGIYDEP--LTPGQCNMIV 119 (131)
Q Consensus 51 ~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~--------~~i~~kk~~~G~~i~kt-~~~ivI~~~~~~--~~~~~~~~~v 119 (131)
+.+|++ .+.++||+|+|+||+++|.|++ +++|+||+++|++++|| +++||||+|+++ ++|++|+++|
T Consensus 82 ~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~v 159 (179)
T 2jkg_A 82 LVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAA 159 (179)
T ss_dssp HHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHH
T ss_pred HHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHH
Confidence 999987 4678999999999999999977 78999999999999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCC
Q 032890 120 ERLGDYLIDQGL 131 (131)
Q Consensus 120 ~~lA~yL~~~gy 131 (131)
++|||||+++||
T Consensus 160 e~LadYL~~~Gy 171 (179)
T 2jkg_A 160 LTFAKELAESSQ 171 (179)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHcCc
Confidence 999999999997
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=95.44 E-value=0.11 Score=34.78 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=54.2
Q ss_pred ccccccccccccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCCceEEEEcC
Q 032890 9 DHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKG 88 (131)
Q Consensus 9 ~~L~~~~~g~~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~~~i~~kk~ 88 (131)
+.|+.. . +.+.+|++++.||-+.+++.+.+...++-+..+...+-.-......-+..+..+-++++.+ +..++
T Consensus 10 ~~l~~~-v-~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~-~G~l~---- 82 (126)
T 3leq_A 10 TGLVDR-V-AEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG-KGYLI---- 82 (126)
T ss_dssp HHHHHH-C-TTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS-SCEEE----
T ss_pred HHHHhc-C-CCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC-CCEEE----
Confidence 356531 2 3799999999999999988665112344455555555322111222244566677777777 33333
Q ss_pred CCcEEEEecC-cEEEEEEeCCCCCcchHHH----HHHHHHHHHH
Q 032890 89 SGGVTVKKTG-QALIFGIYDEPLTPGQCNM----IVERLGDYLI 127 (131)
Q Consensus 89 ~~G~~i~kt~-~~ivI~~~~~~~~~~~~~~----~v~~lA~yL~ 127 (131)
+..-. .+++....+.+.+.|.... .+++++++|.
T Consensus 83 -----v~~ag~~a~L~vla~~~a~lG~v~~em~~~v~ri~~~L~ 121 (126)
T 3leq_A 83 -----LTAAGPGAHLVVLTRQGADVGVVAYQMNMLVKKIGEHLS 121 (126)
T ss_dssp -----EEESSTTEEEEEEECTTCCHHHHHHHHHHHHHHC-----
T ss_pred -----EEEeCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 22222 3666667778788776544 4555555543
No 10
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=94.22 E-value=0.23 Score=33.16 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=66.4
Q ss_pred ccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHcCCCC-CCCccceEEcCeEEEEEEeCCCceEEEEcCCCcEEEEec
Q 032890 19 HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPG-SLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGVTVKKT 97 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~~~-~~~~~gi~~~g~KY~v~r~d~~~~i~~kk~~~G~~i~kt 97 (131)
.+.++++++.||-+.|++.+ .....+-+..+...+-.-. ....+-+.-++.+.+++..| +..+ ++...
T Consensus 18 gv~~a~lvs~DGllia~s~~-~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~-~G~l---------~i~~a 86 (125)
T 1vet_B 18 GVQSTLLLNNEGSLLAYSGY-GDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCM-EGRV---------AITRV 86 (125)
T ss_dssp TEEEEEEECTTCCEEEEEEC-CSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEET-TEEE---------EEEEE
T ss_pred CceEEEEECCCCCeEEecCC-CCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeC-CCEE---------EEEEc
Confidence 79999999999999998755 3566777777777652100 00000011245666777777 3332 23333
Q ss_pred CcEEEEEEeCCCCCcchHHHHHHHHHHHHHh
Q 032890 98 GQALIFGIYDEPLTPGQCNMIVERLGDYLID 128 (131)
Q Consensus 98 ~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~ 128 (131)
..+++....+.+.+.|.....+.++++||.+
T Consensus 87 ~~a~L~Vla~~~a~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 87 ANLLLCMYAKETVGFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHHhh
Confidence 5677788888889999999999999999865
No 11
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=92.07 E-value=0.57 Score=32.62 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=60.5
Q ss_pred cccccccccccceeEEEcCCCCeEEe-----cCCCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCCceEE
Q 032890 10 HLMCDIDGHHLTSAAIVGHDGSVWAQ-----SSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIR 84 (131)
Q Consensus 10 ~L~~~~~g~~~~~aaI~g~dG~~wA~-----s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~~~i~ 84 (131)
.|+. .. .+.+|++++.||-+.++ +... . ..+-+.++...+-.-......-+.-++.+-++++.+ +..
T Consensus 22 ~L~~--v~-Gv~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~-~g~-- 93 (163)
T 1j3w_A 22 ETLR--ET-GARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGE-RMG-- 93 (163)
T ss_dssp HHHH--HH-CCSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECS-SCE--
T ss_pred HHhc--cC-CceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC-CcE--
Confidence 4554 32 68999999999999998 6666 4 666666665544211100111122234444555555 222
Q ss_pred EEcCCCcEEEEecC-cEEEEEEeCCCCCcchH----HHHHHHHHHHHHh
Q 032890 85 GKKGSGGVTVKKTG-QALIFGIYDEPLTPGQC----NMIVERLGDYLID 128 (131)
Q Consensus 85 ~kk~~~G~~i~kt~-~~ivI~~~~~~~~~~~~----~~~v~~lA~yL~~ 128 (131)
+++..-. .++++...+...+.|.. ++++++++++|..
T Consensus 94 -------l~v~~~g~~a~L~Vla~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 94 -------LYVDEAGEHALLVLVFDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp -------EEEEESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------EEEEEeCCCeEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 2333333 47778888888888764 5556666666653
No 12
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=86.64 E-value=0.74 Score=31.78 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=53.0
Q ss_pred ccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHcCCCCCCCccceE-EcCeEEEEEEeCCCceEEEEcCCCcEEEEec
Q 032890 19 HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLH-LGGTKYMVIQGEPGAVIRGKKGSGGVTVKKT 97 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~~~~~~~~gi~-~~g~KY~v~r~d~~~~i~~kk~~~G~~i~kt 97 (131)
.+.+|++++.||- .+.+.+.+...++-+..+...+-.-......-+. -++.+=++++.+ +..++ ++.-.
T Consensus 40 GV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv~VE~~-~G~l~--------v~~aG 109 (150)
T 3kye_A 40 HTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQVVVELD-STLLF--------VSTAG 109 (150)
T ss_dssp TEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEES-SEEEE--------EEEEE
T ss_pred CeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEeC-CcEEE--------EEEcC
Confidence 7999999999999 7777666333344444454433211000011111 345566677776 33333 11122
Q ss_pred CcEEEEEEeCCCCCcchHHHHHHHHHHHH
Q 032890 98 GQALIFGIYDEPLTPGQCNMIVERLGDYL 126 (131)
Q Consensus 98 ~~~ivI~~~~~~~~~~~~~~~v~~lA~yL 126 (131)
..+++...-+.+.+.+...--+.++++.+
T Consensus 110 ~ga~LaVla~~~adlGlv~~em~~lv~ri 138 (150)
T 3kye_A 110 SGTCLAVLAGREADAAVLGYEMAMLVKSV 138 (150)
T ss_dssp TTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34566667777778776555555555444
No 13
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=58.41 E-value=23 Score=23.65 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=54.3
Q ss_pred ccceeEEEcCCCCeEEecCC-C--CCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeCCCceEEEEcCCCcEEEE
Q 032890 19 HLTSAAIVGHDGSVWAQSSN-F--PQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGVTVK 95 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~-f--~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d~~~~i~~kk~~~G~~i~ 95 (131)
.+..+.++|.||-+.++... | .++..+-+..++..--.-. ..-+=.++...+ +.++-.-.++.+++.
T Consensus 25 gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~--~~la~~Lge~~~--------~~l~~eGe~~~i~i~ 94 (136)
T 3t12_B 25 GARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAAT--QALAKLLGEARF--------QEEVHQGERMGLYVD 94 (136)
T ss_dssp CCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHH--HHHHHHTTCSCC--------CCEEEECSSCEEEEE
T ss_pred CCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHH--HHHHHHHCCCch--------hHheEEcCcCCEEEE
Confidence 68999999999988887532 1 1455555655554210000 000000111100 112212223445566
Q ss_pred ecC-cEEEEEEeCCCCCcch----HHHHHHHHHHHHHh
Q 032890 96 KTG-QALIFGIYDEPLTPGQ----CNMIVERLGDYLID 128 (131)
Q Consensus 96 kt~-~~ivI~~~~~~~~~~~----~~~~v~~lA~yL~~ 128 (131)
... .++++..++...+-|- .+++++++++-|.+
T Consensus 95 ~vg~~~iLvvifd~~~~LG~Vrl~~kka~~~l~~il~~ 132 (136)
T 3t12_B 95 EAGEHALLVLVFDETAPLGKVKLHGKAAAAALAAIAEE 132 (136)
T ss_dssp ESSTTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCEEEEEEeCCCCCceEeeehHHHHHHHHHHHHHH
Confidence 664 6999999999988774 56677777766654
No 14
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=48.14 E-value=39 Score=21.40 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=25.1
Q ss_pred cEEEEec-CcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 91 GVTVKKT-GQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 91 G~~i~kt-~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
|+++... |+.+=|.+ .+ .-++..+.++..++-.++.||
T Consensus 67 GFvviN~dKK~mSvsF-sd--~~~~~K~~i~ei~kkykd~Gy 105 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSF-SD--IDENMKKVIKATAEKFKNKGF 105 (111)
T ss_dssp EEEEEETTTTEEEEEE-CS--CCTTHHHHHHHHHHHGGGGCC
T ss_pred EEEEEecCCeEEEEEe-eh--hhhhHHHHHHHHHHHhhcCCc
Confidence 3444433 34444443 33 457888999999999999998
No 15
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=41.45 E-value=20 Score=25.30 Aligned_cols=21 Identities=19% Similarity=0.703 Sum_probs=19.4
Q ss_pred CcchHHHHHHHHHHHHHhCCC
Q 032890 111 TPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 111 ~~~~~~~~v~~lA~yL~~~gy 131 (131)
+.++|..++..++++|++.||
T Consensus 38 P~~~Ce~s~~~V~~~Lk~~gy 58 (186)
T 4g29_A 38 PVGQCESLMTPVSNFMNEKGF 58 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999997
No 16
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=39.22 E-value=1.2e+02 Score=22.81 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+..|+..++++|. |- ..--..++|+++.+.++.
T Consensus 216 dw-~~~a~~i~~~iRa~~-p~--Pga~~~~~g~~~ki~~a~ 252 (317)
T 3rfo_A 216 DW-TKTGEEVYNHIRGLN-PW--PVAYTTLAGQVVKVWWGE 252 (317)
T ss_dssp CT-TSCHHHHHHHHHHTT-TT--TCCEEEETTEEEEEEEEE
T ss_pred CH-HHhHHHHHHHHhccC-CC--CceEEEECCeEEEEEEEE
Confidence 47 668899999999994 42 233456899999988764
No 17
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=35.83 E-value=1e+02 Score=22.97 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+..|+..++++|.+|- ...-..++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~iRa~~~p~--Pga~~~~~g~~~ki~~a~ 246 (305)
T 2bln_A 209 EW-HKPASVLHNMVRAVADPW--PGAFSYVGNQKFTVWSSR 246 (305)
T ss_dssp CT-TSBHHHHHHHHHHTCTTS--CCEEEEETTEEEEEEEEE
T ss_pred CC-cCCHHHHHHHHhccCCCC--CceEEEECCEEEEEEEEE
Confidence 47 668899999999997552 233356799999988763
No 18
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=35.11 E-value=53 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=20.9
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 104 GIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 104 ~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
-+++....+.+..++...+-++|++.||
T Consensus 153 L~Hd~~~~~~~t~~al~~ii~~l~~~Gy 180 (216)
T 2c71_A 153 LLHDVQPEPHPTPEALDIIIPTLKSRGY 180 (216)
T ss_dssp EEESCCSSSCCHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCChHHHHHHHHHHHHHHHHCCC
Confidence 3455433345678899999999999998
No 19
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=34.77 E-value=1.1e+02 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+..|+..++++|. | ....-..++|+++.+.++.
T Consensus 214 dw-~~~a~~I~~~iRa~~-P--~Pga~~~~~g~~~ki~~a~ 250 (314)
T 3tqq_A 214 DW-RKSAVEIARQVRAFN-P--TPIAFTYFEGQPMRIWRAT 250 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred cc-cCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 47 668899999999996 3 2233467899999988864
No 20
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=32.94 E-value=25 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.551 Sum_probs=15.5
Q ss_pred CccceEEcCeEEEEEEeC
Q 032890 61 APTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 61 ~~~gi~~~g~KY~v~r~d 78 (131)
..+-+.++|++|+++|.+
T Consensus 74 ~Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 74 GGTEIKYNGEEYLILSAR 91 (99)
T ss_dssp TCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 21
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=32.27 E-value=27 Score=22.07 Aligned_cols=18 Identities=0% Similarity=0.156 Sum_probs=15.5
Q ss_pred CccceEEcCeEEEEEEeC
Q 032890 61 APTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 61 ~~~gi~~~g~KY~v~r~d 78 (131)
..+-+.++|++|+++|.+
T Consensus 72 ~Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 72 GVKSEKIDNEEVLIMSES 89 (97)
T ss_dssp SCEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 22
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=32.06 E-value=1.6e+02 Score=22.05 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+.+|+..++++|. |- ...-..++|+++.+.++.
T Consensus 215 dw-~~~a~~i~~~iRa~~-p~--Pga~~~~~g~~~ki~~a~ 251 (314)
T 1fmt_A 215 DW-SLSAAQLERCIRAFN-PW--PMSWLEIEGQPVKVWKAS 251 (314)
T ss_dssp CT-TSBHHHHHHHHHHTT-TT--TCEEEEETTEEEEEEEEE
T ss_pred cc-cccHHHHHHHHhccC-CC--CceEEEECCEEEEEEEEE
Confidence 47 678889999999996 31 233346799999988864
No 23
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=31.80 E-value=1.2e+02 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+..|+..++++|. | ...--..++|+++.+.+++
T Consensus 219 dw-~~~a~~I~~~iRa~~-P--~Pga~~~~~g~~~ki~~a~ 255 (318)
T 3q0i_A 219 NW-SDAATHIERCIRAFN-P--WPMSHFEVAENSIKVWQAR 255 (318)
T ss_dssp CT-TSBHHHHHHHHHHTT-T--TTCCEEEETTEEEEEEEEE
T ss_pred cc-CCCHHHHHHHHhccC-C--CCceEEEECCEEEEEEEEE
Confidence 47 668889999999995 3 2233467899999998874
No 24
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=31.51 E-value=37 Score=21.32 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.5
Q ss_pred CccceEEcCeEEEEEEeC
Q 032890 61 APTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 61 ~~~gi~~~g~KY~v~r~d 78 (131)
..+-+.++|++|+++|.+
T Consensus 71 ~Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 71 AGSSYKSEGVEYKVLRED 88 (95)
T ss_dssp CSEEEEETTEEEEEEEGG
T ss_pred CCeEEEECCEEEEEEEHH
Confidence 356699999999999987
No 25
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=29.12 E-value=79 Score=22.18 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=26.6
Q ss_pred cEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 91 GVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 91 G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
-+.|..+.+.++-|.. ...++..++.++++.|++.||
T Consensus 60 t~lIF~SGKiv~TGAk----S~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 60 ALLIFRSGKVNCTGAK----SKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp EEEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCeEEEecCC----CHHHHHHHHHHHHHHHHhcCC
Confidence 3455555555555443 346899999999999999886
No 26
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=28.32 E-value=81 Score=22.80 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.3
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 92 VTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+.|..+.+.++.|. ....++..++.++++.|++.|+
T Consensus 91 ~LIF~SGKiV~TGA----kS~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 91 ALIFASGKMVITGA----KSEKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp EEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCeEEEEec----CCHHHHHHHHHHHHHHHHHcCC
Confidence 44455555555443 2568899999999999999885
No 27
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=27.39 E-value=1.3e+02 Score=19.48 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=29.0
Q ss_pred EEcCCCCeEEecCCCCCCCHHHHHHHHHHcCC--CC-CCCccceEEcCeEEEEEEeC
Q 032890 25 IVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEE--PG-SLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 25 I~g~dG~~wA~s~~f~~i~~~E~~~i~~~f~~--~~-~~~~~gi~~~g~KY~v~r~d 78 (131)
+...+|.+.++|+++ . +......=+..++. |. ..+.--..-+|+-|+.|++.
T Consensus 19 Lka~NgeiI~sSe~Y-~-sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~ 73 (118)
T 2k49_A 19 LKAGNGEVILTSELY-T-GKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA 73 (118)
T ss_dssp EECSSSCEEEECCCB-S-SHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT
T ss_pred EEECCCCEEEECCCc-C-CHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC
Confidence 333489999999888 3 56655555554432 11 12233334456666666665
No 28
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=26.82 E-value=22 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhCC
Q 032890 102 IFGIYDEPLTPGQCNMIVERLGDYLIDQG 130 (131)
Q Consensus 102 vI~~~~~~~~~~~~~~~v~~lA~yL~~~g 130 (131)
|||+|.+...-.....+.+..|+.|+++|
T Consensus 333 IiG~YrG~~~N~eLf~AA~~YA~~Lkenn 361 (391)
T 2wj8_A 333 IMGEYRGTPRNQDLYDAAKAYAEQLKENG 361 (391)
T ss_dssp CCSSCCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCCCCChHHHHHHHHHHHHHHhcC
Confidence 46788887777778888888888888776
No 29
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.45 E-value=47 Score=20.62 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=17.6
Q ss_pred CcchHHHHHHHHHHHHHhCC
Q 032890 111 TPGQCNMIVERLGDYLIDQG 130 (131)
Q Consensus 111 ~~~~~~~~v~~lA~yL~~~g 130 (131)
.|......++++|+|..++|
T Consensus 20 PPpdir~iIdktA~fVaknG 39 (90)
T 2e5z_A 20 PPPDVQPVIDKLAEYVARNG 39 (90)
T ss_dssp CCTTTHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 45679999999999999987
No 30
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=24.99 E-value=35 Score=21.67 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=15.4
Q ss_pred CccceEEcCeEEEEEEeC
Q 032890 61 APTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 61 ~~~gi~~~g~KY~v~r~d 78 (131)
..+-+.++|++|+++|.+
T Consensus 76 ~Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 76 GGTEIEIDGEEYVILSER 93 (100)
T ss_dssp CSEEEECSSCEEEEECTT
T ss_pred CCeEEEECCEEEEEEEhH
Confidence 356699999999999987
No 31
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=24.86 E-value=76 Score=21.60 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 032890 113 GQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 113 ~~~~~~v~~lA~yL~~~gy 131 (131)
.+..++...+-++|++.||
T Consensus 159 ~~t~~al~~ii~~l~~~Gy 177 (195)
T 2cc0_A 159 ANTLAAIPRIAQTLAGKGL 177 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHHCCC
Confidence 4577899999999999997
No 32
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=24.69 E-value=2.4e+02 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+.+|+..++++|.+| ...--..++|+++.+.++.
T Consensus 209 dw-~~~a~~i~~~ira~~~p--~p~a~~~~~~~~~~i~~~~ 246 (660)
T 1z7e_A 209 EW-HKPASVLHNMVRAVADP--WPGAFSYVGNQKFTVWSSR 246 (660)
T ss_dssp CT-TSBHHHHHHHHHHTCTT--SCCEEEEETTEEEEEEECC
T ss_pred CC-CCCHHHHHHHHhccCCC--CCceEEEECCEEEEEEEEE
Confidence 47 66889999999999755 2233356799999998874
No 33
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.91 E-value=1.1e+02 Score=18.25 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=25.5
Q ss_pred ccceeEEEcCCCCeEEecCCCCCCCHHHHHHHHHHc
Q 032890 19 HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF 54 (131)
Q Consensus 19 ~~~~aaI~g~dG~~wA~s~~f~~i~~~E~~~i~~~f 54 (131)
.+-...|++.+|.+.....+. .+++++..+++.+
T Consensus 104 ~~P~~~lid~~G~i~~~~~g~--~~~~~l~~~l~~l 137 (138)
T 4evm_A 104 SYPTQAFIDKEGKLVKTHPGF--MEKDAILQTLKEL 137 (138)
T ss_dssp SSSEEEEECTTCCEEEEEESC--CCHHHHHHHHHHC
T ss_pred cCCeEEEECCCCcEEEeecCC--CcHHHHHHHHHhh
Confidence 345677899999887776675 5788988887754
No 34
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.62 E-value=25 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCC
Q 032890 120 ERLGDYLIDQGL 131 (131)
Q Consensus 120 ~~lA~yL~~~gy 131 (131)
+.+|+||++.||
T Consensus 25 ~~VadWLkk~g~ 36 (90)
T 2eap_A 25 DSLADYFKKLNY 36 (90)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 568999999887
No 35
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=22.47 E-value=73 Score=17.85 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHHHcCC
Q 032890 37 SNFPQFKPEEIAAIMKDFEE 56 (131)
Q Consensus 37 ~~f~~i~~~E~~~i~~~f~~ 56 (131)
|.|..++++|+..|+.-+..
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 34657899999999987753
No 36
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=22.25 E-value=1.9e+02 Score=20.29 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=24.9
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 92 VTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+.|..+.+.++-| .....++..++.++++.|++.|+
T Consensus 61 ~lIF~SGKiv~TG----akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 61 SLIFKSGKMVVTG----AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp EEECTTSEEEEEC----CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCeEEEec----cCCHHHHHHHHHHHHHHHHHcCC
Confidence 3444444444432 23567899999999999999886
No 37
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=21.95 E-value=1.5e+02 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 100 ALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 100 ~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
..||-+++.. ......++..++-++|++.||
T Consensus 275 g~IIL~Hd~~-g~~~t~~aL~~iI~~Lk~~Gy 305 (311)
T 2w3z_A 275 VQVVLMHDIS-EKTITLASLPQIIRYYKDRGY 305 (311)
T ss_dssp EEEEEEECST-TCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCC-ChhhHHHHHHHHHHHHHHCCC
Confidence 4566677642 234678899999999999998
No 38
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=21.88 E-value=1.3e+02 Score=20.84 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=26.1
Q ss_pred cEEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 91 GVTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 91 G~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
-+.|..+.+.++-|. ....++..++.++++.|++.|+
T Consensus 56 t~lIF~SGKiv~TGa----kS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 56 ALLIFSSGKLVVTGA----KSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp EEEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCeEEEecC----CCHHHHHHHHHHHHHHHHHcCC
Confidence 344555555555443 2457899999999999999885
No 39
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.62 E-value=1.4e+02 Score=20.62 Aligned_cols=36 Identities=8% Similarity=0.262 Sum_probs=25.6
Q ss_pred EEEEecCcEEEEEEeCCCCCcchHHHHHHHHHHHHHhCCC
Q 032890 92 VTVKKTGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 131 (131)
Q Consensus 92 ~~i~kt~~~ivI~~~~~~~~~~~~~~~v~~lA~yL~~~gy 131 (131)
+.|..+.+.++-|.- ...++..++.++++.|++.|+
T Consensus 53 ~lIF~SGKiv~TGak----s~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 53 ALIFASGKMVVTGAK----SEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp EEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCeEEEEecC----CHHHHHHHHHHHHHHHHHcCC
Confidence 445555555554432 457899999999999998775
No 40
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=20.41 E-value=2.6e+02 Score=20.48 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHcC-CCCCCCccceEEcCeEEEEEEeC
Q 032890 38 NFPQFKPEEIAAIMKDFE-EPGSLAPTGLHLGGTKYMVIQGE 78 (131)
Q Consensus 38 ~f~~i~~~E~~~i~~~f~-~~~~~~~~gi~~~g~KY~v~r~d 78 (131)
+| +-+.+|+..++++|. +|- +.--..++|+++.+.++.
T Consensus 203 dw-~~~a~~I~~~IRa~~~~p~--PgA~t~~~g~~~ki~~a~ 241 (260)
T 1zgh_A 203 SP-DFDLEKIYDYIRMLDGEGY--PRAFIKYGKYRLEFSRAS 241 (260)
T ss_dssp CT-TSCHHHHHHHHHHTCSTTC--CCCEEEETTEEEEEEEEE
T ss_pred Cc-ccCHHHHHHHHHhhCCCCC--CcEEEEECCEEEEEEEEE
Confidence 47 668999999999996 342 223346799999998875
Done!