Your job contains 1 sequence.
>032892
MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK
YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQI
KADGMEGEAAP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032892
(131 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164585 - symbol:AT5G56940 species:3702 "Arabi... 558 5.5e-54 1
TAIR|locus:2139624 - symbol:SSR16 "small subunit ribosoma... 374 1.7e-34 1
TIGR_CMR|SPO_3253 - symbol:SPO_3253 "ribosomal protein S1... 239 3.5e-20 1
UNIPROTKB|F1SU70 - symbol:LOC100739849 "Uncharacterized p... 232 1.9e-19 1
RGD|1582995 - symbol:Mrps16 "mitochondrial ribosomal prot... 226 8.3e-19 1
UNIPROTKB|P82915 - symbol:MRPS16 "28S ribosomal protein S... 225 1.1e-18 1
UNIPROTKB|Q9Y3D3 - symbol:MRPS16 "28S ribosomal protein S... 224 1.4e-18 1
UNIPROTKB|J9NS54 - symbol:MRPS16 "Uncharacterized protein... 223 1.7e-18 1
UNIPROTKB|E1C907 - symbol:MRPS16 "Uncharacterized protein... 221 2.8e-18 1
UNIPROTKB|P66444 - symbol:rpsP "30S ribosomal protein S16... 221 2.8e-18 1
MGI|MGI:1913492 - symbol:Mrps16 "mitochondrial ribosomal ... 221 2.8e-18 1
TIGR_CMR|ECH_0192 - symbol:ECH_0192 "ribosomal protein S1... 216 9.5e-18 1
ASPGD|ASPL0000067200 - symbol:AN7701 species:162425 "Emer... 213 2.0e-17 1
SGD|S000005934 - symbol:MRPS16 "Mitochondrial ribosomal p... 209 5.3e-17 1
ZFIN|ZDB-GENE-041010-123 - symbol:mrps16 "mitochondrial r... 207 8.6e-17 1
TIGR_CMR|NSE_0123 - symbol:NSE_0123 "ribosomal protein S1... 206 1.1e-16 1
UNIPROTKB|A6ND22 - symbol:MRPS16 "28S ribosomal protein S... 204 1.8e-16 1
UNIPROTKB|B4E032 - symbol:MRPS16 "cDNA FLJ58442, highly s... 204 1.8e-16 1
TIGR_CMR|APH_0054 - symbol:APH_0054 "ribosomal protein S1... 198 7.7e-16 1
POMBASE|SPBC354.06 - symbol:mrps16 "mitochondrial ribosom... 197 9.8e-16 1
TIGR_CMR|CBU_0445 - symbol:CBU_0445 "ribosomal protein S1... 188 8.8e-15 1
TIGR_CMR|BA_3982 - symbol:BA_3982 "ribosomal protein S16"... 187 1.1e-14 1
UNIPROTKB|P66435 - symbol:rpsP "30S ribosomal protein S16... 180 6.2e-14 1
TIGR_CMR|CHY_1433 - symbol:CHY_1433 "ribosomal protein S1... 180 6.2e-14 1
TIGR_CMR|CPS_4069 - symbol:CPS_4069 "ribosomal protein S1... 180 6.2e-14 1
CGD|CAL0001930 - symbol:orf19.7012 species:5476 "Candida ... 178 1.0e-13 1
TIGR_CMR|DET_0568 - symbol:DET_0568 "ribosomal protein S1... 178 1.0e-13 1
UNIPROTKB|Q9KUG0 - symbol:rpsP "30S ribosomal protein S16... 176 1.6e-13 1
TIGR_CMR|VC_0561 - symbol:VC_0561 "ribosomal protein S16"... 176 1.6e-13 1
UNIPROTKB|P0A7T3 - symbol:rpsP "30S ribosomal subunit pro... 171 5.6e-13 1
FB|FBgn0033907 - symbol:mRpS16 "mitochondrial ribosomal p... 171 5.6e-13 1
TIGR_CMR|SO_1357 - symbol:SO_1357 "ribosomal protein S16"... 171 5.6e-13 1
TIGR_CMR|GSU_0643 - symbol:GSU_0643 "ribosomal protein S1... 168 1.2e-12 1
WB|WBGene00018961 - symbol:mrps-16 species:6239 "Caenorha... 158 1.3e-11 1
UNIPROTKB|F1PT11 - symbol:F1PT11 "Uncharacterized protein... 156 2.2e-11 1
TIGR_CMR|CJE_0810 - symbol:CJE_0810 "ribosomal protein S1... 156 2.2e-11 1
UNIPROTKB|P0C473 - symbol:rps16 "30S ribosomal protein S1... 134 4.7e-09 1
UNIPROTKB|P0C474 - symbol:rps16 "30S ribosomal protein S1... 134 4.7e-09 1
UNIPROTKB|P12151 - symbol:rps16 "30S ribosomal protein S1... 134 4.7e-09 1
UNIPROTKB|Q6ENJ5 - symbol:rps16 "30S ribosomal protein S1... 134 4.7e-09 1
>TAIR|locus:2164585 [details] [associations]
symbol:AT5G56940 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0009536
"plastid" evidence=IDA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0005739
EMBL:CP002688 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB024035 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 OMA:YNIVVAH
HSSP:P80379 EMBL:AY034927 EMBL:AY059147 IPI:IPI00524534
RefSeq:NP_200504.1 UniGene:At.7092 ProteinModelPortal:Q9LTS6
SMR:Q9LTS6 STRING:Q9LTS6 PRIDE:Q9LTS6 EnsemblPlants:AT5G56940.1
GeneID:835796 KEGG:ath:AT5G56940 TAIR:At5g56940 InParanoid:Q9LTS6
PhylomeDB:Q9LTS6 ProtClustDB:CLSN2687373 ArrayExpress:Q9LTS6
Genevestigator:Q9LTS6 Uniprot:Q9LTS6
Length = 135
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 106/135 (78%), Positives = 118/135 (87%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
MVVRIRL+RFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQD GKRMGL FDR+K
Sbjct: 1 MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60
Query: 61 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLE---KPTNA 117
YWLSVGAQPSDPVQR+LFR+GLLPPPPMVAMGRKGG RDTRPVDPMTGR ++ K NA
Sbjct: 61 YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120
Query: 118 K--QIKADGMEGEAA 130
Q K + E ++A
Sbjct: 121 NDNQPKEEDTEAKSA 135
>TAIR|locus:2139624 [details] [associations]
symbol:SSR16 "small subunit ribosomal protein 16"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS;TAS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP;RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0009941 GO:GO:0009793
GO:GO:0005840 GO:GO:0003735 EMBL:AL161585 EMBL:AL023094
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:FSKAGIM EMBL:AY045607 EMBL:AY048218
EMBL:AY052220 EMBL:AF412081 EMBL:AY086956 EMBL:AY143795
IPI:IPI00529246 PIR:T05282 RefSeq:NP_195188.1 UniGene:At.22916
HSSP:P80379 ProteinModelPortal:O65686 SMR:O65686 STRING:O65686
PaxDb:O65686 PRIDE:O65686 ProMEX:O65686 EnsemblPlants:AT4G34620.1
GeneID:829614 KEGG:ath:AT4G34620 TAIR:At4g34620 InParanoid:O65686
PhylomeDB:O65686 ProtClustDB:CLSN2916103 ArrayExpress:O65686
Genevestigator:O65686 Uniprot:O65686
Length = 113
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 67/112 (59%), Positives = 88/112 (78%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRLAR GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++ R+ L FDR+K
Sbjct: 1 MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60
Query: 61 YWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPMTGRVL 111
YWLSVGAQP+D V+ +LFRAGL+PP PMV +G K G + T + V P+TG +L
Sbjct: 61 YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112
>TIGR_CMR|SPO_3253 [details] [associations]
symbol:SPO_3253 "ribosomal protein S16" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_168456.1
ProteinModelPortal:Q5LNF2 SMR:Q5LNF2 GeneID:3195394
KEGG:sil:SPO3253 PATRIC:23379951 OMA:GSWNPML Uniprot:Q5LNF2
Length = 121
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 46/83 (55%), Positives = 64/83 (77%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ +RV+
Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60
Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
YWLS GAQ +D V R+L AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83
>UNIPROTKB|F1SU70 [details] [associations]
symbol:LOC100739849 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:YNKRARD EMBL:CU639423 EMBL:FP476096 RefSeq:XP_003133122.1
RefSeq:XP_003483547.1 Ensembl:ENSSSCT00000011270
Ensembl:ENSSSCT00000024853 GeneID:100516466 GeneID:100739849
KEGG:ssc:100516466 KEGG:ssc:100739849 Uniprot:F1SU70
Length = 135
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 42/85 (49%), Positives = 59/85 (69%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA S+ PRDG+ +E LG Y+PLP K + LNFDR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIG 78
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GA S PV+++L +G P PM+
Sbjct: 79 CGAHLSKPVEKLLGLSGFYPLHPMM 103
>RGD|1582995 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 RGD:1582995
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 EMBL:CH474061
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD OrthoDB:EOG4D7Z73
IPI:IPI00362092 RefSeq:NP_001102988.1 UniGene:Rn.8846
Ensembl:ENSRNOT00000009207 GeneID:688912 KEGG:rno:688912
UCSC:RGD:1582995 NextBio:737514 Uniprot:D4A7X1
Length = 135
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GAQ S P++++L +G P PM+
Sbjct: 79 CGAQLSKPMEKLLGLSGFFPLHPMM 103
>UNIPROTKB|P82915 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9913 "Bos taurus" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
EMBL:BC118470 IPI:IPI00699568 RefSeq:NP_001068942.1
UniGene:Bt.88967 ProteinModelPortal:P82915 IntAct:P82915
STRING:P82915 PRIDE:P82915 Ensembl:ENSBTAT00000001255 GeneID:510899
KEGG:bta:510899 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 InParanoid:P82915 OMA:YNKRARD OrthoDB:EOG4D7Z73
NextBio:20869667 Uniprot:P82915
Length = 135
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+P+P K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GA S PV+++L +G P PMV
Sbjct: 79 CGAHLSKPVEKLLGLSGFFPLHPMV 103
>UNIPROTKB|Q9Y3D3 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 GermOnline:ENSG00000182180 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 CTD:51021
HOVERGEN:HBG017758 OrthoDB:EOG4D7Z73 EMBL:AF151890 EMBL:AB049948
EMBL:BC021106 EMBL:AB051351 IPI:IPI00032872 RefSeq:NP_057149.1
UniGene:Hs.180312 ProteinModelPortal:Q9Y3D3 SMR:Q9Y3D3
IntAct:Q9Y3D3 STRING:Q9Y3D3 PhosphoSite:Q9Y3D3 DMDM:13633952
PaxDb:Q9Y3D3 PRIDE:Q9Y3D3 DNASU:51021 Ensembl:ENST00000372945
GeneID:51021 KEGG:hsa:51021 UCSC:uc001jts.1 GeneCards:GC10M075008
HGNC:HGNC:14048 MIM:609204 MIM:610498 neXtProt:NX_Q9Y3D3
Orphanet:254920 PharmGKB:PA31000 InParanoid:Q9Y3D3 GenomeRNAi:51021
NextBio:53544 ArrayExpress:Q9Y3D3 Bgee:Q9Y3D3 CleanEx:HS_MRPS16
Genevestigator:Q9Y3D3 Uniprot:Q9Y3D3
Length = 137
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GA S P++++L AG P PM+
Sbjct: 79 CGAHLSKPMEKLLGLAGFFPLHPMM 103
>UNIPROTKB|J9NS54 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
GeneTree:ENSGT00390000014309 EMBL:AAEX03002830
Ensembl:ENSCAFT00000049758 Uniprot:J9NS54
Length = 199
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN +R+++W+
Sbjct: 83 IRLALSGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIG 142
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GA S PV+R+L +G P PM+
Sbjct: 143 CGAHLSKPVERLLGLSGFFPLHPMM 167
>UNIPROTKB|E1C907 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AADN02040962
IPI:IPI00589221 RefSeq:XP_001233312.1 RefSeq:XP_003642554.1
RefSeq:XP_003643364.1 UniGene:Gga.10148 Ensembl:ENSGALT00000000703
GeneID:100858706 GeneID:769996 KEGG:gga:100858706 KEGG:gga:769996
NextBio:20920220 Uniprot:E1C907
Length = 136
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 44/86 (51%), Positives = 57/86 (66%)
Query: 3 VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
V IR A GC N+PFYR++AA S+ RDGK+LE LG +PLP K GLN +R+++W
Sbjct: 17 VVIRFALGGCTNRPFYRIVAAHSKRARDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHW 76
Query: 63 LSVGAQPSDPVQRILFRAGLLPPPPM 88
L GAQ S P +++L AG LP PM
Sbjct: 77 LGCGAQLSRPAEKLLGLAGFLPLHPM 102
>UNIPROTKB|P66444 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:170187
"Streptococcus pneumoniae TIGR4" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AE005672 GenomeReviews:AE005672_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:FSKAGIM PIR:H95089 RefSeq:NP_345273.1
ProteinModelPortal:P66444 EnsemblBacteria:EBSTRT00000025469
GeneID:930725 KEGG:spn:SP_0775 PATRIC:19705913 Uniprot:P66444
Length = 90
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 45/83 (54%), Positives = 58/83 (69%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRL R G K KPFYR+ ADSRSPRDG+ +E +G YNPL ++ ++ L DRV
Sbjct: 1 MAVKIRLTRMGSKKKPFYRINVADSRSPRDGRFIETVGTYNPLVAEN---QVTLKEDRVL 57
Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
WL+ GAQPSD V+ IL + G+L
Sbjct: 58 AWLANGAQPSDTVRNILSKEGVL 80
>MGI|MGI:1913492 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 MGI:MGI:1913492 GO:GO:0005739 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 OMA:YNKRARD OrthoDB:EOG4D7Z73 EMBL:AB049949
EMBL:AK019243 EMBL:AK005206 EMBL:BC024656 IPI:IPI00132147
RefSeq:NP_079716.1 UniGene:Mm.23747 ProteinModelPortal:Q9CPX7
SMR:Q9CPX7 STRING:Q9CPX7 PhosphoSite:Q9CPX7 PaxDb:Q9CPX7
PRIDE:Q9CPX7 Ensembl:ENSMUST00000061444 GeneID:66242 KEGG:mmu:66242
UCSC:uc007sjp.1 InParanoid:Q9CPX7 NextBio:321067 Bgee:Q9CPX7
CleanEx:MM_MRPS16 Genevestigator:Q9CPX7
GermOnline:ENSMUSG00000049960 Uniprot:Q9CPX7
Length = 135
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMV 89
GA S P++++L +G P PM+
Sbjct: 79 CGAHLSKPMEKLLGLSGFFPLHPMM 103
>TIGR_CMR|ECH_0192 [details] [associations]
symbol:ECH_0192 "ribosomal protein S16" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:YP_507016.1
ProteinModelPortal:Q2GHR7 SMR:Q2GHR7 STRING:Q2GHR7 GeneID:3927148
KEGG:ech:ECH_0192 PATRIC:20575921
BioCyc:ECHA205920:GJNR-192-MONOMER Uniprot:Q2GHR7
Length = 87
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 42/83 (50%), Positives = 59/83 (71%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRLARFG K +PFYRV+ ADSR RDGK +E LG+YNP+ ++ + + DR+K
Sbjct: 1 MSVKIRLARFGAKKRPFYRVVVADSRVARDGKFIESLGFYNPMLPKEHELFVKVKVDRLK 60
Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
YWLSVGAQ +D + + + G++
Sbjct: 61 YWLSVGAQATDRISWFI-KKGII 82
>ASPGD|ASPL0000067200 [details] [associations]
symbol:AN7701 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:BN001304 EMBL:AACD01000130 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
OrthoDB:EOG498Z9D RefSeq:XP_680970.1 ProteinModelPortal:Q5AVH9
STRING:Q5AVH9 EnsemblFungi:CADANIAT00000832 GeneID:2869400
KEGG:ani:AN7701.2 OMA:YNIVVAH Uniprot:Q5AVH9
Length = 105
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 47/97 (48%), Positives = 62/97 (63%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSG----------- 49
MVVRIRLARFG K++PFY ++ A +RS R+ K +EV+G NP+P + +
Sbjct: 1 MVVRIRLARFGNKHQPFYNIVVAQARSARNSKPIEVIGTLNPIPQRPTNLSDEEARNARP 60
Query: 50 -KRMGLNFDRVKYWLSVGAQPSDPVQRILFRAGLLPP 85
K + L+ R KYWL VGAQPSD V R+L AGL+ P
Sbjct: 61 YKEISLDRSRAKYWLGVGAQPSDTVWRLLSLAGLVKP 97
>SGD|S000005934 [details] [associations]
symbol:MRPS16 "Mitochondrial ribosomal protein of the small
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005840
"ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0032543 "mitochondrial translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IPI] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IPI] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 SGD:S000005934 EMBL:BK006949
GO:GO:0003735 GO:GO:0032543 EMBL:U33335 GO:GO:0005763
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 OrthoDB:EOG498Z9D
PIR:S59680 RefSeq:NP_015312.1 ProteinModelPortal:Q02608 SMR:Q02608
DIP:DIP-4453N IntAct:Q02608 MINT:MINT-572585 STRING:Q02608
PaxDb:Q02608 PeptideAtlas:Q02608 EnsemblFungi:YPL013C GeneID:856094
KEGG:sce:YPL013C CYGD:YPL013c OMA:PARNNPK NextBio:981128
Genevestigator:Q02608 GermOnline:YPL013C Uniprot:Q02608
Length = 121
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 45/92 (48%), Positives = 61/92 (66%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRM--G------ 53
+VRIRLARFG KN P Y ++ A+SR RD K +EVLG Y P+P + + + G
Sbjct: 5 LVRIRLARFGRKNSPVYNIVVANSRKARDAKPIEVLGTYVPVPSPVTKRELKRGVVPIKD 64
Query: 54 --LNFDRVKYWLSVGAQPSDPVQRILFRAGLL 83
L+FDR KYW+ VGAQPS+ V ++L +AG+L
Sbjct: 65 VKLDFDRTKYWIGVGAQPSETVTKLLRKAGIL 96
>ZFIN|ZDB-GENE-041010-123 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein S16"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 ZFIN:ZDB-GENE-041010-123 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 CTD:51021 HOVERGEN:HBG017758 EMBL:BC083390
IPI:IPI00507006 RefSeq:NP_001006030.1 UniGene:Dr.13763
ProteinModelPortal:Q5XJB4 PRIDE:Q5XJB4 GeneID:450009
KEGG:dre:450009 InParanoid:Q5XJB4 NextBio:20832992
ArrayExpress:Q5XJB4 Bgee:Q5XJB4 Uniprot:Q5XJB4
Length = 129
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 3 VRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYW 62
V IRLA G N+PFYR++AA ++ RDGK+LE +G Y+PLP + K + N++R+K+W
Sbjct: 17 VVIRLALGGATNRPFYRIVAAYNKRARDGKYLEQVGSYDPLPNIHNEKLVAFNYERIKHW 76
Query: 63 LSVGAQPSDPVQRILFRAGLLPPPPM 88
++ GA + PV ++L AG P PM
Sbjct: 77 IACGAHTTKPVAKLLGLAGFFPLHPM 102
>TIGR_CMR|NSE_0123 [details] [associations]
symbol:NSE_0123 "ribosomal protein S16" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:DSRNSRD RefSeq:YP_506023.1 ProteinModelPortal:Q2GES3
STRING:Q2GES3 GeneID:3932034 KEGG:nse:NSE_0123 PATRIC:22680351
ProtClustDB:CLSK2528008 BioCyc:NSEN222891:GHFU-159-MONOMER
Uniprot:Q2GES3
Length = 85
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 36/76 (47%), Positives = 58/76 (76%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
+++IRLARFG K +P+Y+++ A+S SPRDGK LE +G Y+PL +D R+ L+ +R++Y
Sbjct: 7 MLKIRLARFGRKKRPYYKIVVANSSSPRDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRY 66
Query: 62 WLSVGAQPSDPVQRIL 77
W SVGA+P++ V + +
Sbjct: 67 WTSVGAKPTERVAKFV 82
>UNIPROTKB|A6ND22 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
IPI:IPI00643459 ProteinModelPortal:A6ND22 SMR:A6ND22 STRING:A6ND22
PRIDE:A6ND22 Ensembl:ENST00000372940 ArrayExpress:A6ND22
Bgee:A6ND22 Uniprot:A6ND22
Length = 99
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRIL 77
GA S P++++L
Sbjct: 79 CGAHLSKPMEKLL 91
>UNIPROTKB|B4E032 [details] [associations]
symbol:MRPS16 "cDNA FLJ58442, highly similar to 28S
ribosomal protein S16, mitochondrial (S16mt)" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
EMBL:AK303204 IPI:IPI00909954 SMR:B4E032 STRING:B4E032
Ensembl:ENST00000416782 OMA:CIFAKAY Uniprot:B4E032
Length = 123
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRLA GC N+PFYR++AA ++ PRDG+ +E LG Y+PLP K + LN DR+++W+
Sbjct: 19 IRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIG 78
Query: 65 VGAQPSDPVQRIL 77
GA S P++++L
Sbjct: 79 CGAHLSKPMEKLL 91
>TIGR_CMR|APH_0054 [details] [associations]
symbol:APH_0054 "ribosomal protein S16" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959
RefSeq:YP_504687.1 ProteinModelPortal:Q2GLR4 STRING:Q2GLR4
GeneID:3930190 KEGG:aph:APH_0054 PATRIC:20948658 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:KRMGAHK ProtClustDB:PRK00040
BioCyc:APHA212042:GHPM-92-MONOMER Uniprot:Q2GLR4
Length = 96
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRL R G K KPFYR++ ADSR RDGK +E +G+YNP+ + + +N +R+
Sbjct: 1 MSVKIRLMRLGAKKKPFYRIVVADSRVQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLG 60
Query: 61 YWLSVGAQPSDPV 73
YWL VGAQP+D V
Sbjct: 61 YWLGVGAQPTDRV 73
>POMBASE|SPBC354.06 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein subunit
S16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003735 GO:GO:0032543 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 PIR:T40286
RefSeq:NP_595230.2 STRING:O43020 EnsemblFungi:SPBC354.06.1
GeneID:2541005 OrthoDB:EOG498Z9D NextBio:20802119 Uniprot:O43020
Length = 96
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP----GQDSGKRMG--- 53
MVV+IRLAR G +N+PFY ++ A++ K +E +G ++P+P QDS R+
Sbjct: 1 MVVKIRLARHGVRNRPFYHIVVANAWKAPQAKPIETIGTFDPIPKKIDSQDSIPRIKDIQ 60
Query: 54 LNFDRVKYWLSVGAQPSDPVQRILFRAGLLPPPPM 88
LN +R KYW+SVGAQPSD V+ + + LLP P+
Sbjct: 61 LNVERFKYWISVGAQPSDTVRSLAEKFQLLPKKPV 95
>TIGR_CMR|CBU_0445 [details] [associations]
symbol:CBU_0445 "ribosomal protein S16" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 RefSeq:NP_819482.2 ProteinModelPortal:Q83E83
PRIDE:Q83E83 GeneID:1208329 KEGG:cbu:CBU_0445 PATRIC:17929581
OMA:DLARVDH ProtClustDB:PRK14523 BioCyc:CBUR227377:GJ7S-443-MONOMER
Uniprot:Q83E83
Length = 137
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 50/132 (37%), Positives = 72/132 (54%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRV 59
MVV IRLAR G K PFY ++ AD R PRDG+ +E +GYYNP+ GQD R+ L +R+
Sbjct: 1 MVV-IRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDI--RLQLEKERI 57
Query: 60 KYWLSVGAQPSDPVQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTNAKQ 119
+WL+ GAQ S V+ ++ + P RKG + R + +K ++
Sbjct: 58 SHWLNQGAQTSLRVKHLIKKLEKSPEEAQKGGMRKGEFK--RLQAEQAAKAQKKAVATEE 115
Query: 120 IKADGMEGEAAP 131
KA+ E + AP
Sbjct: 116 PKAE--EAKEAP 125
>TIGR_CMR|BA_3982 [details] [associations]
symbol:BA_3982 "ribosomal protein S16" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:NP_846224.1
RefSeq:YP_020621.1 RefSeq:YP_029946.1 ProteinModelPortal:Q81WJ3
DNASU:1086780 EnsemblBacteria:EBBACT00000008723
EnsemblBacteria:EBBACT00000015777 EnsemblBacteria:EBBACT00000020497
GeneID:1086780 GeneID:2820040 GeneID:2848276 KEGG:ban:BA_3982
KEGG:bar:GBAA_3982 KEGG:bat:BAS3695 OMA:FSKAGIM
BioCyc:BANT260799:GJAJ-3753-MONOMER
BioCyc:BANT261594:GJ7F-3870-MONOMER Uniprot:Q81WJ3
Length = 90
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRL R G K PFYRV+ ADSRSPRDG+ +E +G YNP+ Q + + +N +
Sbjct: 1 MAVKIRLKRMGAKKTPFYRVVVADSRSPRDGRFIEEIGTYNPV-AQPA--EVKINEEAAL 57
Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
WL GA+PSD V+ + G++
Sbjct: 58 KWLGNGAKPSDTVRNLFSNQGIM 80
>UNIPROTKB|P66435 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0005886 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:BX842581 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
PIR:H70927 RefSeq:NP_217425.1 RefSeq:NP_337489.1
RefSeq:YP_006516362.1 ProteinModelPortal:P66435 SMR:P66435
PRIDE:P66435 EnsemblBacteria:EBMYCT00000002684
EnsemblBacteria:EBMYCT00000069640 GeneID:13317702 GeneID:888631
GeneID:925301 KEGG:mtc:MT2977 KEGG:mtu:Rv2909c KEGG:mtv:RVBD_2909c
PATRIC:18128314 TubercuList:Rv2909c OMA:KMREPHY
ProtClustDB:PRK14520 Uniprot:P66435
Length = 162
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+I+L R G P YRV AD+R+ RDG+ +EV+G Y+P ++ + +N +R +
Sbjct: 1 MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHP---KEEPSLIEINSERAQ 57
Query: 61 YWLSVGAQPSDPVQRIL 77
YWLSVGAQP++PV ++L
Sbjct: 58 YWLSVGAQPTEPVLKLL 74
>TIGR_CMR|CHY_1433 [details] [associations]
symbol:CHY_1433 "ribosomal protein S16" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886
PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_360265.1
ProteinModelPortal:Q3AC69 STRING:Q3AC69 GeneID:3727827
KEGG:chy:CHY_1433 PATRIC:21275997 OMA:HYDPRKT
BioCyc:CHYD246194:GJCN-1432-MONOMER Uniprot:Q3AC69
Length = 86
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVK 60
M V+IRL R G KN PFYRV+ AD+RSPRDG+ ++ +GYY+P+ Q + + +N ++
Sbjct: 1 MAVKIRLKRMGAKNNPFYRVVVADARSPRDGRVIDEIGYYDPVK-QPAA--VVINEEKAL 57
Query: 61 YWLSVGAQPSDPVQRILFRAGLL 83
WL GAQ ++ + + +AG+L
Sbjct: 58 DWLKKGAQLTETARALFRKAGVL 80
>TIGR_CMR|CPS_4069 [details] [associations]
symbol:CPS_4069 "ribosomal protein S16" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
RefSeq:YP_270724.1 ProteinModelPortal:Q47WU8 SMR:Q47WU8
STRING:Q47WU8 GeneID:3519834 KEGG:cps:CPS_4069 PATRIC:21471013
OMA:DSRNSRD BioCyc:CPSY167879:GI48-4082-MONOMER Uniprot:Q47WU8
Length = 81
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 33/76 (43%), Positives = 53/76 (69%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
+V IRLAR G K +PFY+V+ ADSR+ RDG+ +E +G++NP Q +++ L+ DR+ +
Sbjct: 1 MVTIRLARGGAKKRPFYQVVVADSRNSRDGRFIEKVGFFNPT-AQGQAEKLRLDLDRITH 59
Query: 62 WLSVGAQPSDPVQRIL 77
W+ GA SD V +++
Sbjct: 60 WVGQGATVSDRVAKLV 75
>CGD|CAL0001930 [details] [associations]
symbol:orf19.7012 species:5476 "Candida albicans" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
CGD:CAL0001930 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AACQ01000024 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 RefSeq:XP_720306.1
RefSeq:XP_888732.1 ProteinModelPortal:Q5AFQ6 STRING:Q5AFQ6
GeneID:3638020 GeneID:3704216 KEGG:cal:CaO19.7012
KEGG:cal:CaO19_7012 Uniprot:Q5AFQ6
Length = 173
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP----GQDSG---KRMGL 54
+V+IRLARFG K++P Y ++ ++ + +EV+G YNP+P G DSG K + L
Sbjct: 48 MVKIRLARFGRKHQPIYNIVVMKAKKAQQKLPMEVIGTYNPIPVPLSGNDSGLKIKDVSL 107
Query: 55 NFDRVKYWLSVGAQPSDPVQRILFRAGLLP 84
+ R KYWL +GA P+ V +L + GLLP
Sbjct: 108 DLHRTKYWLGMGAVPTPRVTWLLKKVGLLP 137
>TIGR_CMR|DET_0568 [details] [associations]
symbol:DET_0568 "ribosomal protein S16" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
OMA:KRMGAHK ProtClustDB:PRK00040 RefSeq:YP_181311.1
ProteinModelPortal:Q3Z8Y8 STRING:Q3Z8Y8 GeneID:3230124
KEGG:det:DET0568 PATRIC:21608205 BioCyc:DETH243164:GJNF-568-MONOMER
Uniprot:Q3Z8Y8
Length = 82
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
+++IRL R G KP YR++ ++RSPRD + +++G YNP+ ++ + +N ++ Y
Sbjct: 1 MLKIRLTRIGAPKKPCYRIIVTEARSPRDATYTDLVGTYNPMTNPET---VVINAEKALY 57
Query: 62 WLSVGAQPSDPVQRILFRAGLL 83
W+ GAQP+D V R+L +AG++
Sbjct: 58 WIGKGAQPTDTVARLLKKAGVV 79
>UNIPROTKB|Q9KUG0 [details] [associations]
symbol:rpsP "30S ribosomal protein S16" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVK 60
+V IRLAR G K +PFY+++ ADSR+ G+ +E +G++NP GQ+ G R+ L DRV
Sbjct: 1 MVTIRLARHGAKKRPFYQIVVADSRNSATGRFIEKVGFFNPTATGQEEGLRLDL--DRVN 58
Query: 61 YWLSVGAQPSDPVQRIL 77
+W+S GA SD V +++
Sbjct: 59 HWVSQGASLSDRVAQLV 75
>TIGR_CMR|VC_0561 [details] [associations]
symbol:VC_0561 "ribosomal protein S16" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
ProtClustDB:PRK00040 OMA:DSRNSRD PIR:A82307 RefSeq:NP_230212.1
ProteinModelPortal:Q9KUG0 SMR:Q9KUG0 DNASU:2615238 GeneID:2615238
KEGG:vch:VC0561 PATRIC:20080240 Uniprot:Q9KUG0
Length = 82
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVK 60
+V IRLAR G K +PFY+++ ADSR+ G+ +E +G++NP GQ+ G R+ L DRV
Sbjct: 1 MVTIRLARHGAKKRPFYQIVVADSRNSATGRFIEKVGFFNPTATGQEEGLRLDL--DRVN 58
Query: 61 YWLSVGAQPSDPVQRIL 77
+W+S GA SD V +++
Sbjct: 59 HWVSQGASLSDRVAQLV 75
>UNIPROTKB|P0A7T3 [details] [associations]
symbol:rpsP "30S ribosomal subunit protein S16"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IDA] [GO:0004520 "endodeoxyribonuclease
activity" evidence=IDA] [GO:0043566 "structure-specific DNA
binding" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] InterPro:IPR000307 InterPro:IPR020592
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 GO:GO:0004520 PDB:3J00 PDBsum:3J00
GO:GO:0000028 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH PDBsum:3IZV
PDBsum:3IZW GO:GO:0022627 GO:GO:0043566 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ EMBL:X01818 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0228 HOGENOM:HOG000246720 OMA:KRMGAHK
ProtClustDB:PRK00040 PIR:S07948 RefSeq:NP_417100.1
RefSeq:YP_490832.1 ProteinModelPortal:P0A7T3 SMR:P0A7T3
DIP:DIP-47829N IntAct:P0A7T3 MINT:MINT-1280042 PaxDb:P0A7T3
PRIDE:P0A7T3 EnsemblBacteria:EBESCT00000001904
EnsemblBacteria:EBESCT00000014322 GeneID:12930606 GeneID:947103
KEGG:ecj:Y75_p2557 KEGG:eco:b2609 PATRIC:32120617 EchoBASE:EB0908
EcoGene:EG10915 BioCyc:EcoCyc:EG10915-MONOMER
BioCyc:ECOL316407:JW2590-MONOMER EvolutionaryTrace:P0A7T3
Genevestigator:P0A7T3 Uniprot:P0A7T3
Length = 82
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/77 (42%), Positives = 53/77 (68%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQ-DSGKRMGLNFDRVK 60
+V IRLAR G K +PFY+V+ ADSR+ R+G+ +E +G++NP+ + + G R+ L DR+
Sbjct: 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDL--DRIA 58
Query: 61 YWLSVGAQPSDPVQRIL 77
+W+ GA SD V ++
Sbjct: 59 HWVGQGATISDRVAALI 75
>FB|FBgn0033907 [details] [associations]
symbol:mRpS16 "mitochondrial ribosomal protein S16"
species:7227 "Drosophila melanogaster" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS;NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS;NAS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:AE013599 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
CTD:51021 GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AY119210
RefSeq:NP_523737.1 UniGene:Dm.2747 ProteinModelPortal:Q9V6Y3
SMR:Q9V6Y3 STRING:Q9V6Y3 PaxDb:Q9V6Y3 PRIDE:Q9V6Y3
EnsemblMetazoa:FBtr0087578 EnsemblMetazoa:FBtr0310367
EnsemblMetazoa:FBtr0310368 GeneID:36570 KEGG:dme:Dmel_CG8338
FlyBase:FBgn0033907 InParanoid:Q9V6Y3 OrthoDB:EOG4GXD48
PhylomeDB:Q9V6Y3 GenomeRNAi:36570 NextBio:799259 Bgee:Q9V6Y3
GermOnline:CG8338 Uniprot:Q9V6Y3
Length = 129
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IR R GC N+PFY ++ + R + +E +G ++PLP + + + LN +R++YWL
Sbjct: 20 IRFVRLGCTNRPFYHIVVMERRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLG 79
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMVAM 91
GA S P +L AGLLP P M
Sbjct: 80 KGAHLSTPAAELLGIAGLLPIHPRTYM 106
>TIGR_CMR|SO_1357 [details] [associations]
symbol:SO_1357 "ribosomal protein S16" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 OMA:DSRNSRD RefSeq:NP_716977.1
ProteinModelPortal:Q8EH72 SMR:Q8EH72 GeneID:1169178
KEGG:son:SO_1357 PATRIC:23522368 Uniprot:Q8EH72
Length = 82
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLP-GQDSGKRMGLNFDRVK 60
+V IRLAR G K +PFY ++ ADSR+ RDG+ +E +G++NPL GQ+ R+ L RV+
Sbjct: 1 MVTIRLARGGAKKRPFYNIVVADSRNARDGRFIERVGFFNPLARGQEETLRLDLA--RVE 58
Query: 61 YWLSVGAQPSDPVQRIL 77
+W++ GA +D V +++
Sbjct: 59 HWVANGAATTDRVAKLI 75
>TIGR_CMR|GSU_0643 [details] [associations]
symbol:GSU_0643 "ribosomal protein S16" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 OMA:FSKAGIM
RefSeq:NP_951700.2 ProteinModelPortal:P62230 GeneID:2685473
KEGG:gsu:GSU0643 PATRIC:22024033 BioCyc:GSUL243231:GH27-653-MONOMER
Uniprot:P62230
Length = 95
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY-- 61
+IRLAR G K KPFY+++ AD RS RDG+ +E +G Y+P Q+ + F+ K
Sbjct: 11 KIRLARAGAKKKPFYQIIVADVRSRRDGRFIENVGTYDP--NQNPA---AVKFEEAKTLE 65
Query: 62 WLSVGAQPSDPVQRILFRAGL 82
WL GAQP+D V++IL +AG+
Sbjct: 66 WLGKGAQPTDTVKQILKKAGI 86
>WB|WBGene00018961 [details] [associations]
symbol:mrps-16 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 GO:GO:0005739
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:FO081078 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 PIR:T30112
RefSeq:NP_001022207.1 ProteinModelPortal:Q10129 SMR:Q10129
STRING:Q10129 PaxDb:Q10129 PRIDE:Q10129 EnsemblMetazoa:F56D1.3.1
EnsemblMetazoa:F56D1.3.2 GeneID:3565469 KEGG:cel:CELE_F56D1.3
UCSC:F56D1.3.1 CTD:3565469 WormBase:F56D1.3 eggNOG:NOG243012
InParanoid:Q10129 OMA:GGHLTIH NextBio:956615 Uniprot:Q10129
Length = 147
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/87 (43%), Positives = 50/87 (57%)
Query: 5 IRLARFGCKNKPFYRVMAADSRS-PR--DGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
I LA FGC N+PFY V R+ R +G LE +G ++PLP Q + K + LNF R+KY
Sbjct: 15 IGLALFGCTNRPFYHVCVFPDRALGRRYEGNILEQVGTFDPLPNQKNEKLVALNFGRLKY 74
Query: 62 WLSV-GAQPSDPVQRILFRAGLLPPPP 87
W+ A S PV +L +GL P P
Sbjct: 75 WIGERNAHISVPVLELLGLSGLFPIHP 101
>UNIPROTKB|F1PT11 [details] [associations]
symbol:F1PT11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:CIFAKAY EMBL:AAEX03016714 Ensembl:ENSCAFT00000014176
Uniprot:F1PT11
Length = 134
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 41/112 (36%), Positives = 59/112 (52%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
I LA C N+PFY ++AA +RS DG +E L +PLP K + LN D++ +W+
Sbjct: 19 ILLALSDCANQPFYHIVAAHNRSS-DGCFMEHLDSCDPLPNSHGEKIVALNLDQIWHWIH 77
Query: 65 VGAQPSDPVQRILFRAGLLPPPPMVAM-----GRKGG----PRDTRPVDPMT 107
G S V++IL +G +P PM+ RKGG ++T P P T
Sbjct: 78 YGTHLSQQVEKILGLSGFVPVHPMMITYAERPQRKGGLLLAAQETDPEAPET 129
>TIGR_CMR|CJE_0810 [details] [associations]
symbol:CJE_0810 "ribosomal protein S16" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0004519 "endonuclease activity"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IMP]
InterPro:IPR000307 InterPro:IPR020592 Pfam:PF00886 PROSITE:PS00732
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228 HOGENOM:HOG000246720
ProtClustDB:PRK00040 RefSeq:YP_178814.1 ProteinModelPortal:Q5HV71
STRING:Q5HV71 GeneID:3230760 KEGG:cjr:CJE0810 PATRIC:20043365
OMA:GWIELIG BioCyc:CJEJ195099:GJC0-825-MONOMER Uniprot:Q5HV71
Length = 75
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64
IRL R G +PFYR++ DSR RDG +E +GYYNP+ + K ++ +R+ YW S
Sbjct: 4 IRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVEPEVIK---VDAERLAYWKS 60
Query: 65 VGAQPSDPVQRI 76
VGA+ SD V I
Sbjct: 61 VGAKLSDKVASI 72
>UNIPROTKB|P0C473 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000307 InterPro:IPR020592 InterPro:IPR026994
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0009507
GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 EMBL:AY522331
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 ProteinModelPortal:P0C473 SMR:P0C473
PRIDE:P0C473 Gramene:P0C473 Genevestigator:P0C473 Uniprot:P0C473
Length = 85
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
++++RL R G K + YR++A D RS R+G+ L +G+Y+P+ Q LN + Y
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTC-----LNVPAILY 55
Query: 62 WLSVGAQPSDPVQRILFRA 80
+L GAQP+ V IL +A
Sbjct: 56 FLEKGAQPTRTVSDILRKA 74
>UNIPROTKB|P0C474 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000307 InterPro:IPR020592
InterPro:IPR026994 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0009507 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
EMBL:AY522329 GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 ProteinModelPortal:P0C474 SMR:P0C474
PRIDE:P0C474 Gramene:P0C474 Uniprot:P0C474
Length = 85
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
++++RL R G K + YR++A D RS R+G+ L +G+Y+P+ Q LN + Y
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTC-----LNVPAILY 55
Query: 62 WLSVGAQPSDPVQRILFRA 80
+L GAQP+ V IL +A
Sbjct: 56 FLEKGAQPTRTVSDILRKA 74
>UNIPROTKB|P12151 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC;ISS] InterPro:IPR000307 InterPro:IPR020592
InterPro:IPR026994 Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385
GO:GO:0009507 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 EMBL:X15901
EMBL:AY522330 GO:GO:0003735 PIR:JQ0264 ProtClustDB:CHL00005
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
PANTHER:PTHR12919:SF3 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
RefSeq:NP_039362.1 ProteinModelPortal:P12151 SMR:P12151
PRIDE:P12151 GeneID:3131439 KEGG:osa:3131439 Gramene:P12151
KO:K02959 Uniprot:P12151
Length = 85
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
++++RL R G K + YR++A D RS R+G+ L +G+Y+P+ Q LN + Y
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTC-----LNVPAILY 55
Query: 62 WLSVGAQPSDPVQRILFRA 80
+L GAQP+ V IL +A
Sbjct: 56 FLEKGAQPTRTVSDILRKA 74
>UNIPROTKB|Q6ENJ5 [details] [associations]
symbol:rps16 "30S ribosomal protein S16, chloroplastic"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000307 InterPro:IPR020592 InterPro:IPR026994
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 GO:GO:0009507
GO:GO:0009536 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AP006728 RefSeq:YP_052728.1 ProteinModelPortal:Q6ENJ5
SMR:Q6ENJ5 PRIDE:Q6ENJ5 GeneID:2885960 Gramene:Q6ENJ5
ProtClustDB:CHL00005 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 PANTHER:PTHR12919:SF3 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 Uniprot:Q6ENJ5
Length = 85
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKY 61
++++RL R G K + YR++A D RS R+G+ L +G+Y+P+ Q LN + Y
Sbjct: 1 MLKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTC-----LNVPAILY 55
Query: 62 WLSVGAQPSDPVQRILFRA 80
+L GAQP+ V IL +A
Sbjct: 56 FLEKGAQPTRTVSDILRKA 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.140 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 131 131 0.00091 102 3 11 22 0.41 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 565 (60 KB)
Total size of DFA: 127 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.58u 0.12s 13.70t Elapsed: 00:00:01
Total cpu time: 13.59u 0.12s 13.71t Elapsed: 00:00:01
Start: Fri May 10 07:13:29 2013 End: Fri May 10 07:13:30 2013