Query 032892
Match_columns 131
No_of_seqs 118 out of 1137
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pys_P 30S ribosomal protein S 100.0 1.2E-44 4E-49 254.2 4.5 82 2-85 1-82 (83)
2 3r8n_P 30S ribosomal protein S 100.0 1.5E-43 5.2E-48 248.1 7.6 79 2-81 1-79 (82)
3 3bn0_A 30S ribosomal protein S 100.0 2.1E-44 7.3E-49 264.8 3.2 83 1-87 1-83 (112)
4 3bbn_P Ribosomal protein S16; 100.0 7.9E-44 2.7E-48 252.4 -4.0 82 2-88 1-82 (88)
5 1vbv_A Hypothetical protein B0 46.5 12 0.0004 26.2 2.4 13 12-24 46-58 (105)
6 4gpa_A Glutamate receptor 4; P 34.4 45 0.0015 25.2 4.1 34 4-43 339-372 (389)
7 3dxo_A Uncharacterized snoal-l 32.6 19 0.00065 24.1 1.6 26 19-44 94-120 (121)
8 3om0_A Glutamate receptor, ion 21.1 1.1E+02 0.0038 23.5 4.3 34 4-43 342-375 (393)
9 3hsy_A Glutamate receptor 2; l 19.9 94 0.0032 24.0 3.6 34 4-43 335-368 (376)
10 3qek_A NMDA glutamate receptor 18.9 75 0.0026 24.4 2.8 43 4-59 337-379 (384)
No 1
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=100.00 E-value=1.2e-44 Score=254.19 Aligned_cols=82 Identities=46% Similarity=0.925 Sum_probs=77.9
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 032892 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g 81 (131)
||+|||+|+||||+|||||||+|||++|||+|||+||||||+++. ++.+.||+||++|||++|||||+||++||+++|
T Consensus 1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~--~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g 78 (83)
T 3pys_P 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTDTARRLLRQAG 78 (83)
T ss_dssp CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCS--TTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGC
T ss_pred CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCC--CceEEEchHHHHHHHHCCCcCCHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999999853 478999999999999999999999999999999
Q ss_pred CCCC
Q 032892 82 LLPP 85 (131)
Q Consensus 82 ~l~~ 85 (131)
++.+
T Consensus 79 ~~~~ 82 (83)
T 3pys_P 79 VFRQ 82 (83)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9875
No 2
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=100.00 E-value=1.5e-43 Score=248.07 Aligned_cols=79 Identities=39% Similarity=0.792 Sum_probs=74.8
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 032892 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g 81 (131)
||+|||+|+||||+|||||||+|||++|||+|||+||||||++++. ++.+.||+||++|||++|||||+||++||++++
T Consensus 1 mvkIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~-~~~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTCCSS-SCCCCCCHHHHHHHHHHTCEECHHHHHHHTTSC
T ss_pred CcEEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCCCCC-cceEEEcHHHHHHHHHCCCccCHHHHHHHHhhh
Confidence 4899999999999999999999999999999999999999998753 357999999999999999999999999999986
No 3
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=100.00 E-value=2.1e-44 Score=264.83 Aligned_cols=83 Identities=39% Similarity=0.729 Sum_probs=73.0
Q ss_pred CceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 032892 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 80 (131)
Q Consensus 1 M~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~ 80 (131)
|||+|||+|+|||++|||||||+|||++|||+|||+||||||+ + ++.+.||+|||+|||++|||||+||++||+++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~-~---~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~a 76 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK-R---KVLINVYPEKVKEWVLKGVELSHRAKAILWNH 76 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT-T---TEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCC-C---cceEEEcHHHHHHHHHcCCccCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999 3 37999999999999999999999999999999
Q ss_pred CCCCCCC
Q 032892 81 GLLPPPP 87 (131)
Q Consensus 81 g~l~~~p 87 (131)
|++++++
T Consensus 77 g~~~~~~ 83 (112)
T 3bn0_A 77 GILKEVV 83 (112)
T ss_dssp THHHHHC
T ss_pred CCcccch
Confidence 9998873
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.9e-44 Score=252.37 Aligned_cols=82 Identities=37% Similarity=0.659 Sum_probs=77.2
Q ss_pred ceEEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 032892 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (131)
Q Consensus 2 ~VkIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi~yWL~~GAqpT~tV~~LL~~~g 81 (131)
||+|||+|+|||++|||||||+|||++|||+|||+||||||+++ .+.||+|||+|||++|||||+||++||+++|
T Consensus 1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~-----~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g 75 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKS-----QTYLNVPAILDFLEKGAQPTETVYDILKRAE 75 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSS-----CBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCC-----ceEEcHHHHHHHHHcCCccCHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999975 4899999999999999999999999999999
Q ss_pred CCCCCCc
Q 032892 82 LLPPPPM 88 (131)
Q Consensus 82 ~l~~~p~ 88 (131)
++++++.
T Consensus 76 ~~~~~~~ 82 (88)
T 3bbn_P 76 VFKEFRL 82 (88)
T ss_dssp SSSCC--
T ss_pred Ccccccc
Confidence 9998763
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=46.54 E-value=12 Score=26.21 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.3
Q ss_pred CCCCCeeEEEEec
Q 032892 12 CKNKPFYRVMAAD 24 (131)
Q Consensus 12 ~K~rPfYrIVv~d 24 (131)
.|++|||+|+|-+
T Consensus 46 ~~~QPfYhVL~e~ 58 (105)
T 1vbv_A 46 LRAAPWYHVVMED 58 (105)
T ss_dssp --CCCEEEEEEEC
T ss_pred cCCCCceEEEEeC
Confidence 4899999988753
No 6
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=34.36 E-value=45 Score=25.17 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=25.7
Q ss_pred EEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCC
Q 032892 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL 43 (131)
Q Consensus 4 kIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~ 43 (131)
.|++-..|.+..+.|.|+=... +. .++||+|+|.
T Consensus 339 ~v~Fd~~G~r~~~~~~I~~l~~-----~~-~~~VG~W~~~ 372 (389)
T 4gpa_A 339 NVQFDHYGRRVNYTMDVFELKS-----TG-PRKVGYWNDM 372 (389)
T ss_dssp EEEBCTTSCBCSCEEEEEEEET-----TE-EEEEEEEETT
T ss_pred eEEECCCCCCCCCEEEEEEEEC-----CE-EEEEEEEECC
Confidence 3677788988888898886642 22 6889999995
No 7
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=32.62 E-value=19 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEEEeccCCCC-CCcceeeeeeecCCC
Q 032892 19 RVMAADSRSPR-DGKHLEVLGYYNPLP 44 (131)
Q Consensus 19 rIVv~dsr~~R-dGk~IE~LG~YdP~~ 44 (131)
.+-.+|--.=+ |||..+..||+||++
T Consensus 94 ~~~G~d~l~~~~dGrI~~~~~f~d~~p 120 (121)
T 3dxo_A 94 VAGGTDVVSLNTEGRIDNVVGFLDGAV 120 (121)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEEC--
T ss_pred eeeEEEEEEECCCCCEEEEEEecCCCC
Confidence 55566655556 899999999999986
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=21.13 E-value=1.1e+02 Score=23.50 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCC
Q 032892 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL 43 (131)
Q Consensus 4 kIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~ 43 (131)
.|++...|....+.|.|+-... +| ...+|+|+|-
T Consensus 342 ~i~fd~~G~~~~~~~~i~~~~~----~g--~~~VG~w~~~ 375 (393)
T 3om0_A 342 RVEFNSKGQRTNYTLRILEKSR----QG--HREIGVWYSN 375 (393)
T ss_dssp EECBCTTSCBCSCEEEEEEEET----TE--EEEEEEEECC
T ss_pred eEEeCCCCcccceeEEEEEecc----CC--ceEeeeEcCC
Confidence 4677778888778898888763 22 6899999994
No 9
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=19.93 E-value=94 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=25.2
Q ss_pred EEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCC
Q 032892 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPL 43 (131)
Q Consensus 4 kIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~ 43 (131)
.|++-..|....+-|.|+-+.. +| ..+||+|+|-
T Consensus 335 ~i~fd~~G~~~~~~~~i~~~~~----~g--~~~VG~w~~~ 368 (376)
T 3hsy_A 335 NIKFDQNGKRINYTINIMELKT----NG--PRKIGYWSEV 368 (376)
T ss_dssp EECBCTTSBBCSCEEEEEEEET----TE--EEEEEEEETT
T ss_pred ceeECCCCCCccceEEEEEecC----CC--ceEEEEEcCC
Confidence 4777777877778888887742 22 5889999994
No 10
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=18.91 E-value=75 Score=24.42 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.5
Q ss_pred EEeeccCCCCCCCeeEEEEeccCCCCCCcceeeeeeecCCCCCCCCcceEEeHHHH
Q 032892 4 RIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRV 59 (131)
Q Consensus 4 kIRL~R~G~K~rPfYrIVv~dsr~~RdGk~IE~LG~YdP~~~~~~~k~i~Ln~eRi 59 (131)
.|++-..|....+.|.|+=... .-..+||+|++ .++.||.+.|
T Consensus 337 ~v~fd~~G~~~~~~~~I~~~~~------~~~~~VG~w~~-------~~l~i~~~~i 379 (384)
T 3qek_A 337 RIEFNEDGDRKFAQYSIMNLQN------RKLVQVGIFNG-------SYIIQNDRKI 379 (384)
T ss_dssp EECBCTTSCBCSCCEEEEEEET------TEEEEEEEECS-------SSEEECSSCC
T ss_pred ceEECCCCCCCcccEEEEEEcC------CceEEEEEEeC-------CeEeecccee
Confidence 4677777877678899987764 35789999993 2466665443
Done!