BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032893
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N+ + WLVI G+VY+VT FL +HPGG+EVLL DA++ FEDVGHS AR
Sbjct: 14 LEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR 73
Query: 67 EMMEKYHIGEIDSSSV 82
EM+++Y+IG+I S +
Sbjct: 74 EMLKQYYIGDIHPSDL 89
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+VI G+VY++T FL +HPGG+EVLL DAT+ FEDVGHS AR
Sbjct: 7 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAR 66
Query: 67 EMMEKYHIGEI 77
EM+++Y+IG++
Sbjct: 67 EMLKQYYIGDV 77
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAK+N +D W +I VY+VT FL +HPGG+EVL+ KDAT+ FEDVGHS AREM
Sbjct: 13 EVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREM 72
Query: 69 MEKYHIGEI 77
M++Y +GE+
Sbjct: 73 MKQYKVGEL 81
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+VI G+VY++T FL +HPGG+EVLL DAT+ FEDVGHS AR
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAR 68
Query: 67 EMMEKYHIGEI 77
EM+++Y+IG++
Sbjct: 69 EMLKQYYIGDV 79
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+VI G+VY++T FL +HPGG+E+LL DAT+ FED+GHS AR
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAR 68
Query: 67 EMMEKYHIGEI 77
EM+++Y+IG++
Sbjct: 69 EMLKQYYIGDV 79
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 58/79 (73%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+VI G+VY++T FL +HPGG+E+LL DAT+ FED+GHS AR
Sbjct: 14 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAR 73
Query: 67 EMMEKYHIGEIDSSSVPAK 85
EM+++Y+IG++ + + K
Sbjct: 74 EMLKQYYIGDVHPNDLKPK 92
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 57/79 (72%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+VI G+VY++T FL +HPGG+EVL DAT+ FEDVGHS AR
Sbjct: 9 LEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAR 68
Query: 67 EMMEKYHIGEIDSSSVPAK 85
EM+++Y+IG++ + + K
Sbjct: 69 EMLKQYYIGDVHPNDLKPK 87
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHN+ WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGHS
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 63 DSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS 103
AREM + + IGE+ P K PP+ + + + + S
Sbjct: 70 TDAREMSKTFIIGELHPDDRPKLNK--PPETLITTIDSSSS 108
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAKHN + W+V+ G+VY++T FL +HPGG+EVL DAT+ FEDVGHS AR
Sbjct: 15 LEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAR 74
Query: 67 EMMEKYHIGEIDSSSVPAK 85
EM ++Y+IG++ + + K
Sbjct: 75 EMSKQYYIGDVHPNDLKPK 93
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN W++I KVY++T FL +HPGG+EVLL DAT+ FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S AREM++ + IGE+
Sbjct: 62 SPDAREMLKTFIIGEL 77
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 8 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 67
Query: 62 SDSAREMMEKYHIGEIDSSSVPAKR-KYTPPQQAV 95
S ARE+ + + IGE+ P R K T P +++
Sbjct: 68 STDARELSKTFIIGELH----PDDRSKITKPSESI 98
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 56/79 (70%)
Query: 7 FQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAR 66
+EVAK N ++ W+V+ G+VY++T FL +HPGG+EVL DAT+ FEDVGHS AR
Sbjct: 14 LEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAR 73
Query: 67 EMMEKYHIGEIDSSSVPAK 85
EM ++Y+IG++ + + K
Sbjct: 74 EMSKQYYIGDVHPNDLKPK 92
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + + IGE+
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT+++EDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T +LE+HPGG+EVL DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL A DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + + IGE+
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHN+ WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 9 VKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 69 STDARELSKTFIIGEL 84
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT+++EDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+E L DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHN+ WL++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 4 VKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 63
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 64 STDARELSKTFIIGEL 79
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+E L DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+E L DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT++FED GH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+HPGG+EVL DAT++FED GH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KHNN WL++ KVY++T FLE+H GG+EVL DAT++FEDVGH
Sbjct: 2 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGH 61
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + + IGE+
Sbjct: 62 STDARELSKTFIIGEL 77
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHNN WL++ KVY++T FLE+HPGG+ VL DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + + IGE+
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHNN WL++ KVY++T FLE+HPGG+ VL A DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + + IGE+
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KHNN WL++ KVY++T FLE+HPGG+ VL A DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + + IGE+
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KH + W+++ KVY++T FLE+HPGG+EVL DAT++FEDVGHS
Sbjct: 9 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + Y IGE+
Sbjct: 69 TDARELSKTYIIGEL 83
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%)
Query: 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHS 62
K + +E+ KH + W+++ KVY++T FLE+HPGG+EVL DAT++FEDVGHS
Sbjct: 10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 63 DSAREMMEKYHIGEI 77
ARE+ + Y IGE+
Sbjct: 70 TDARELSKTYIIGEL 84
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KH + W+++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 4 VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 63
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + Y IGE+
Sbjct: 64 STDARELSKTYIIGEL 79
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KH + W+++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 4 VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 63
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + Y IGE+
Sbjct: 64 STDARELSKTYIIGEL 79
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KH + W+++ KVY++T +LE+HPGG+EVL DAT++FEDVGH
Sbjct: 4 VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGH 63
Query: 62 SDSAREMMEKYHIGEI 77
S ARE+ + Y IGE+
Sbjct: 64 STDARELSKTYIIGEL 79
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGH 61
K + +E+ KH + W+++ KVY++T FLE+HPGG+EVL DAT++FEDVGH
Sbjct: 4 VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 63
Query: 62 SDSAREMMEKYHIGEI 77
S RE+ + Y IGE+
Sbjct: 64 STDVRELSKTYIIGEL 79
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%)
Query: 8 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSARE 67
+E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A D T+ F+ V +
Sbjct: 11 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYES 70
Query: 68 MMEKYHIGEI 77
M+++ +G +
Sbjct: 71 MLKECLVGRM 80
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 128
Query: 124 RYFSKK 129
Y + +
Sbjct: 129 EYLASQ 134
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 65
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 66 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 123
Query: 124 RYFSKK 129
Y + +
Sbjct: 124 EYLASQ 129
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 128
Query: 124 RYFSKK 129
Y + +
Sbjct: 129 EYLASQ 134
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 128
Query: 124 RYFSKK 129
Y + +
Sbjct: 129 EYLASQ 134
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 128
Query: 124 RYFSKK 129
Y + +
Sbjct: 129 EYLASQ 134
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 69 MEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
++KY +G + S P PP + ED ++ L P+ + + F
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDF 128
Query: 124 RYFSKK 129
Y + +
Sbjct: 129 EYLASQ 134
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 4 VHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVG--- 60
V ++VA+H++ DDCW+ I GKVY++TP++ +HPG ++L +++T+ +E
Sbjct: 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGE 68
Query: 61 -HSDSAREMMEKYHIGEID 78
HS A ++++Y IG ++
Sbjct: 69 PHSSLAARLLQRYLIGTLE 87
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
EVAKHN DDCW+VI+G VY++T FL +HPGG +V+ KD T FE + A +
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 65
Query: 69 MEKY 72
++KY
Sbjct: 66 IDKY 69
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 8 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVG-HSDSAR 66
+EVAKHN ++D W++ G+V+++T F ++HPGG +V+L +DAT + + H +A
Sbjct: 9 EEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAAD 67
Query: 67 EMMEK 71
+M+K
Sbjct: 68 VVMKK 72
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 8 QEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGG-DEVLLAATEKDATDDF---EDVGHS 62
+EV +H + ++ W+ V++VT F+E HPGG D++LLAA A + F V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAA--GGALEPFWALYAVHGE 67
Query: 63 DSAREMMEKYHIGEIDSSSVPA 84
E++++Y +GE+ PA
Sbjct: 68 PHVLELLQQYKVGELSPDEAPA 89
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 4 VHDFQEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGGDEVLL--AATEKDATDDFEDVG 60
++ +EV+ H + + W+ + +V++VT F++ HPGG L+ A + V
Sbjct: 6 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVH 65
Query: 61 HSDSAREMMEKYHIGEI 77
+ RE++ +Y IGE+
Sbjct: 66 NQSHVRELLAQYKIGEL 82
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 9 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREM 68
++ HNN W VI GKVY++ F + +L +D E + RE
Sbjct: 30 DLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRES 89
Query: 69 MEKYHIGE 76
M + +G+
Sbjct: 90 MHAFCVGQ 97
>pdb|1R9K|A Chain A, Representative Solution Structure Of The Catalytic
Domain Of Sope2
Length = 172
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 14 NNRDDCWLVISGKVYNVTPFLED 36
NN+D C ++ K ++TPFL++
Sbjct: 53 NNKDQCCKLLISKGVSITPFLKE 75
>pdb|1R6E|A Chain A, Solution Structure Of The Catalytic Domain Of Sope2
Length = 168
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 14 NNRDDCWLVISGKVYNVTPFLED 36
NN+D C ++ K ++TPFL++
Sbjct: 49 NNKDQCCKLLISKGVSITPFLKE 71
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 14 NNRDDCWLVISGKVYNVTPFLEDHPG 39
NNRDD ++++G + F + +PG
Sbjct: 165 NNRDDLVVILAGYADRMENFFQSNPG 190
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 64 SAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAF 123
S ++ + + +G I ++V + PP AV S +D G+ Q L G A+ F
Sbjct: 2 SXKKENQWFDVGVIKGTNVXVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKF 61
Query: 124 R 124
R
Sbjct: 62 R 62
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 14 NNRDDCWLVISGKVYNVTPFLEDHPG 39
NNRDD ++++G + F + +PG
Sbjct: 158 NNRDDLVVILAGYADRMENFFQSNPG 183
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 25 GKVYNVTPFLEDHPGGDEVLLAATEKDAT 53
G V+ FLE H GD VL+ + D T
Sbjct: 61 GNNVKVSKFLESHNAGDRVLVQGLKGDPT 89
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 58 DVGHSDSAREMMEKYH--IGEIDSSSVPAKRKYTPPQQAV--NSPEDTGSAAKILQFLVP 113
+V S + +E Y IGE + S + K + + V NS G A+IL LVP
Sbjct: 5 EVKEFSSGKRKLEDYKSIIGEEEVSKIQEKAEKLKGRSFVHVNSTSFGGGVAEILHSLVP 64
Query: 114 MLILGIAFAFRYF 126
+L I R+F
Sbjct: 65 LL-RSIGIEARWF 76
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 25 GKVYNVTPFLEDHPGGDEVLLAATEKDAT 53
G V+ FLE H GD VL+ + D T
Sbjct: 61 GNNVKVSKFLESHNAGDRVLVQGLKGDPT 89
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 58 DVGHSDSAREMMEKYH--IGEIDSSSVPAKRKYTPPQQAV--NSPEDTGSAAKILQFLVP 113
+V S + +E Y IGE + S + K + + V NS G A+IL LVP
Sbjct: 5 EVKEFSSGKRKLEDYKSIIGEEEVSKIQEKAEKLKGRSFVHVNSTSFGGGVAEILHSLVP 64
Query: 114 MLILGIAFAFRYF 126
+L I R+F
Sbjct: 65 LL-RSIGIEARWF 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,168,122
Number of Sequences: 62578
Number of extensions: 165863
Number of successful extensions: 367
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 64
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)