Query 032893
Match_columns 131
No_of_seqs 160 out of 1328
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 100.0 6.1E-33 1.3E-37 194.7 5.3 85 2-86 4-88 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 1E-25 2.2E-30 144.5 4.7 75 4-78 1-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.9 5.7E-24 1.2E-28 149.1 5.9 76 4-79 69-144 (145)
4 PLN03198 delta6-acyl-lipid des 99.9 8.6E-22 1.9E-26 166.1 6.8 77 2-80 103-179 (526)
5 PLN03199 delta6-acyl-lipid des 99.8 5.3E-21 1.2E-25 160.1 9.4 77 3-82 24-100 (485)
6 COG5274 CYB5 Cytochrome b invo 99.8 4.4E-21 9.5E-26 139.3 5.3 79 2-80 49-127 (164)
7 PLN02252 nitrate reductase [NA 99.8 2.7E-20 5.8E-25 164.7 6.7 79 2-81 517-595 (888)
8 KOG4232 Delta 6-fatty acid des 99.6 2.1E-16 4.5E-21 128.9 6.3 78 2-81 7-86 (430)
9 KOG4576 Sulfite oxidase, heme- 99.6 1.4E-15 3.1E-20 107.4 2.3 82 3-84 80-163 (167)
10 COG4892 Predicted heme/steroid 99.1 2.4E-10 5.3E-15 72.3 4.7 74 3-79 2-77 (81)
11 KOG1110 Putative steroid membr 97.9 1.8E-05 3.9E-10 58.6 4.1 54 3-58 56-113 (183)
12 KOG1108 Predicted heme/steroid 97.5 7.3E-05 1.6E-09 57.6 2.5 56 3-59 60-118 (281)
13 PF14901 Jiv90: Cleavage induc 91.1 0.12 2.6E-06 34.6 1.3 14 22-35 60-73 (94)
14 PRK14758 hypothetical protein; 74.9 6 0.00013 20.3 2.9 21 108-128 7-27 (27)
15 KOG0720 Molecular chaperone (D 71.6 2.2 4.8E-05 36.2 1.4 15 20-34 380-394 (490)
16 TIGR02148 Fibro_Slime fibro-sl 62.6 8.5 0.00018 25.6 2.6 25 9-33 20-45 (90)
17 PF11698 V-ATPase_H_C: V-ATPas 48.5 1 2.3E-05 31.4 -3.8 28 27-54 65-92 (119)
18 PF15086 UPF0542: Uncharacteri 46.8 33 0.00071 21.9 3.2 24 102-125 21-44 (74)
19 PHA02131 hypothetical protein 46.6 14 0.00031 22.5 1.5 15 18-32 30-45 (70)
20 PRK06549 acetyl-CoA carboxylas 42.5 17 0.00036 25.7 1.5 13 19-31 5-17 (130)
21 cd00256 VATPase_H VATPase_H, r 39.3 5.9 0.00013 33.4 -1.3 43 17-63 367-409 (429)
22 PRK06764 hypothetical protein; 38.9 32 0.0007 22.8 2.4 17 13-29 80-96 (105)
23 COG3424 BcsA Predicted naringe 33.5 18 0.00039 29.6 0.6 20 35-54 275-295 (356)
24 PF05521 Phage_H_T_join: Phage 31.6 54 0.0012 20.2 2.6 18 17-34 65-82 (95)
25 COG4858 Uncharacterized membra 30.8 41 0.00088 25.6 2.1 17 113-129 197-214 (226)
26 PF05283 MGC-24: Multi-glycosy 29.5 1.3E+02 0.0028 22.6 4.6 27 102-128 159-185 (186)
27 PF10618 Tail_tube: Phage tail 29.1 53 0.0011 22.6 2.3 25 17-41 7-31 (119)
28 PF02797 Chal_sti_synt_C: Chal 28.9 20 0.00044 25.7 0.2 22 33-54 62-84 (151)
29 PF15013 CCSMST1: CCSMST1 fami 28.6 53 0.0012 21.1 2.1 20 112-131 34-53 (77)
30 PF04375 HemX: HemX; InterPro 28.0 1.9E+02 0.0041 23.7 5.8 11 117-127 41-51 (372)
31 COG3197 FixS Uncharacterized p 26.9 74 0.0016 19.4 2.4 16 109-124 5-20 (58)
32 PF04415 DUF515: Protein of un 26.4 1.3E+02 0.0029 25.4 4.6 19 111-129 38-56 (416)
33 PRK10920 putative uroporphyrin 25.6 1.9E+02 0.004 24.2 5.3 19 110-128 41-59 (390)
34 PF07879 PHB_acc_N: PHB/PHA ac 22.3 57 0.0012 20.3 1.3 24 2-25 17-40 (64)
35 PF08078 PsaX: PsaX family; I 21.8 1.5E+02 0.0034 16.2 2.8 17 110-126 18-34 (37)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.97 E-value=6.1e-33 Score=194.72 Aligned_cols=85 Identities=56% Similarity=1.014 Sum_probs=80.6
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecCCC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSS 81 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~~ 81 (131)
.+.||++||++||+++||||+|+|+|||||+|+++||||.++|+.+||+|+|+.|++.+||..|++||++|+||.+..+.
T Consensus 4 ~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~~ 83 (124)
T KOG0537|consen 4 LKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTTA 83 (124)
T ss_pred cccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCC
Q 032893 82 VPAKR 86 (131)
Q Consensus 82 ~~~~~ 86 (131)
.+...
T Consensus 84 ~~~~~ 88 (124)
T KOG0537|consen 84 RPVVW 88 (124)
T ss_pred cccee
Confidence 65544
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.92 E-value=1e-25 Score=144.49 Aligned_cols=75 Identities=49% Similarity=0.907 Sum_probs=69.8
Q ss_pred ccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhh-ceeeeec
Q 032893 4 VHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEK-YHIGEID 78 (131)
Q Consensus 4 ~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~-~~VG~l~ 78 (131)
+||++||++|+.+++|||+|+|+|||||+|+..||||..+++.++|+|+|+.|....|+..+.++|++ |+||.|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999445699999999998 9999985
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.90 E-value=5.7e-24 Score=149.13 Aligned_cols=76 Identities=38% Similarity=0.681 Sum_probs=72.2
Q ss_pred ccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecC
Q 032893 4 VHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDS 79 (131)
Q Consensus 4 ~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~ 79 (131)
.+|.+||++||+.+|||++|+|+|||||.|++.||||.+.|++++|+|+|..|+.+|...+-.++|+.++||.+.+
T Consensus 69 ~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 69 PVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred ccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 5899999999999999999999999999999999999999999999999999999877778889999999998864
No 4
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.85 E-value=8.6e-22 Score=166.08 Aligned_cols=77 Identities=40% Similarity=0.817 Sum_probs=72.8
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecCC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSS 80 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 80 (131)
.+.+|++||++|++++||||+|+|+|||||+|++.||||. +|..++|+|+|+.|++. |+..+.++|++|+||+++..
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~ 179 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNV 179 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCc
Confidence 3589999999999999999999999999999999999998 89999999999999986 99999999999999999764
No 5
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=160.07 Aligned_cols=77 Identities=36% Similarity=0.707 Sum_probs=71.6
Q ss_pred CccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecCCCC
Q 032893 3 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSV 82 (131)
Q Consensus 3 ~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~~~ 82 (131)
+.+|++||++|+++++||++|+|+|||||+|+ .||||+ +|+.++|+|+|+.|+.. |+..++++|++|+||++++++.
T Consensus 24 ~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~~~~~ 100 (485)
T PLN03199 24 QKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLIPEST 100 (485)
T ss_pred CccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhccccccccccc
Confidence 68999999999999999999999999999997 899998 88899999999999986 9999999999999999976543
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.83 E-value=4.4e-21 Score=139.35 Aligned_cols=79 Identities=38% Similarity=0.775 Sum_probs=75.3
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecCC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSS 80 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 80 (131)
.+.++.+||.+|+++++|||+|+|+|||||.|+.+||||+++|+..+|+|+|..|+..+|+..+.++++.++||.+...
T Consensus 49 ~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 49 PKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred cccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.81 E-value=2.7e-20 Score=164.70 Aligned_cols=79 Identities=44% Similarity=0.919 Sum_probs=75.0
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHHHHHhhhhceeeeecCCC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSS 81 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~~ 81 (131)
++.||++||++|++.++|||+|+|+|||+|+|++.||||.++|+.++|+|+|+.|+.. ||..|+++|++|+||.+....
T Consensus 517 ~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~~ 595 (888)
T PLN02252 517 SKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTTG 595 (888)
T ss_pred cceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCcccccc
Confidence 3789999999999999999999999999999999999999999999999999999986 999999999999999997654
No 8
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.65 E-value=2.1e-16 Score=128.89 Aligned_cols=78 Identities=32% Similarity=0.655 Sum_probs=71.1
Q ss_pred CCccCHHHHhcccCCCCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCHH--HHHhhhhceeeeecC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDS--AREMMEKYHIGEIDS 79 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~~--a~~~l~~~~VG~l~~ 79 (131)
.+++|++++++|++.++.|++|+| |||+|+|+++||||+.+|..++|+|+|++|++. |... |.+.|+.+.+|....
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCc
Confidence 368899999999999999999999 999999999999999999999999999999985 6665 778899999999876
Q ss_pred CC
Q 032893 80 SS 81 (131)
Q Consensus 80 ~~ 81 (131)
+.
T Consensus 85 e~ 86 (430)
T KOG4232|consen 85 EI 86 (430)
T ss_pred cc
Confidence 53
No 9
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.55 E-value=1.4e-15 Score=107.36 Aligned_cols=82 Identities=33% Similarity=0.581 Sum_probs=68.2
Q ss_pred CccCHHHHhcccCCCC-eEEEEcCEEEecCcCcccCCChHHHHhhhhCC-CCchhhhhcCCCHHHHHhhhhceeeeecCC
Q 032893 3 KVHDFQEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGGDEVLLAATEK-DATDDFEDVGHSDSAREMMEKYHIGEIDSS 80 (131)
Q Consensus 3 ~~~t~~ev~~h~~~~~-~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~-D~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 80 (131)
..|+.+||++|+.+.+ .||.+...|||||+|++.||||.++++.+.|- |--++..+.+....++++|+.|+||++++.
T Consensus 80 ~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L~~~ 159 (167)
T KOG4576|consen 80 HIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGELNPE 159 (167)
T ss_pred cchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccCChh
Confidence 4789999999998775 99999999999999999999998777655443 655666666677789999999999999987
Q ss_pred CCCC
Q 032893 81 SVPA 84 (131)
Q Consensus 81 ~~~~ 84 (131)
+.+.
T Consensus 160 dv~~ 163 (167)
T KOG4576|consen 160 DVVA 163 (167)
T ss_pred hccc
Confidence 6554
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=99.07 E-value=2.4e-10 Score=72.31 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=57.3
Q ss_pred CccCHHHHhcccCCC-CeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhh-cCCCHHHHHhhhhceeeeecC
Q 032893 3 KVHDFQEVAKHNNRD-DCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFED-VGHSDSAREMMEKYHIGEIDS 79 (131)
Q Consensus 3 ~~~t~~ev~~h~~~~-~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~-~~hs~~a~~~l~~~~VG~l~~ 79 (131)
|.||++|+.++|.++ ..+|.++|+||||+.- -.+-+|..--+.-+|+|+|+.|++ ..|..+..+.++. ||.+..
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s-~~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~Pv--VG~L~k 77 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLS-PSWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLPV--VGALIK 77 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccC-cccCCCccccccccchhHHHHHhhcCCchhHHHhcCch--hheeec
Confidence 789999999999766 5999999999999872 235556555566799999999994 4676666666554 787764
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.87 E-value=1.8e-05 Score=58.64 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=41.8
Q ss_pred CccCHHHHhcccCCC---CeEEEEcCEEEecCc-CcccCCChHHHHhhhhCCCCchhhhh
Q 032893 3 KVHDFQEVAKHNNRD---DCWLVISGKVYNVTP-FLEDHPGGDEVLLAATEKDATDDFED 58 (131)
Q Consensus 3 ~~~t~~ev~~h~~~~---~~wvvi~g~VYDvT~-f~~~HPGG~~~l~~~aG~D~T~~f~~ 58 (131)
+.||.+||+++++.+ ..+++|+|+|||||. ---.-|||.- -.+||+|++.....
T Consensus 56 ~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La~ 113 (183)
T KOG1110|consen 56 RDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLAK 113 (183)
T ss_pred cccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHHh
Confidence 369999999999766 388999999999997 1125688854 34689999986544
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=97.48 E-value=7.3e-05 Score=57.59 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=43.8
Q ss_pred CccCHHHHhcccCCCC---eEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhc
Q 032893 3 KVHDFQEVAKHNNRDD---CWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDV 59 (131)
Q Consensus 3 ~~~t~~ev~~h~~~~~---~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~ 59 (131)
..||++||+.+|+.++ .++.|=|.|||||.= .+|-|.-..-..++|+|+|.+|-..
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~g-k~hYgsG~sYnhFaGRDASrAFvsG 118 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRG-KKHYGSGCSYNHFAGRDASRAFVSG 118 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCC-eeeeCCCCCcccccccccchheecc
Confidence 4899999999997653 889999999999984 3454332345789999999987654
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=91.07 E-value=0.12 Score=34.61 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.9
Q ss_pred EEcCEEEecCcCcc
Q 032893 22 VISGKVYNVTPFLE 35 (131)
Q Consensus 22 vi~g~VYDvT~f~~ 35 (131)
..+|+|||||+|+.
T Consensus 60 c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 60 CMDGKVYDITEWAT 73 (94)
T ss_pred EcCceEEehhhhhh
Confidence 46999999999973
No 14
>PRK14758 hypothetical protein; Provisional
Probab=74.90 E-value=6 Score=20.25 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 032893 108 LQFLVPMLILGIAFAFRYFSK 128 (131)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ 128 (131)
+.+++.++|+...++.++|++
T Consensus 7 FEliLivlIlCalia~~fy~s 27 (27)
T PRK14758 7 FEFILIILILCALIAARFYLS 27 (27)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 345666777777888888864
No 15
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=2.2 Score=36.25 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=12.7
Q ss_pred EEEEcCEEEecCcCc
Q 032893 20 WLVISGKVYNVTPFL 34 (131)
Q Consensus 20 wvvi~g~VYDvT~f~ 34 (131)
++.-||+|||+|+|+
T Consensus 380 y~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 380 YACMDGKVYDITEWA 394 (490)
T ss_pred eeecCCceEeehhhh
Confidence 345699999999997
No 16
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=62.64 E-value=8.5 Score=25.57 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=19.7
Q ss_pred HHhcccCCCCeEEEEcCE-EEecCcC
Q 032893 9 EVAKHNNRDDCWLVISGK-VYNVTPF 33 (131)
Q Consensus 9 ev~~h~~~~~~wvvi~g~-VYDvT~f 33 (131)
|.=+..+++|.||-|+|+ |-|+-..
T Consensus 20 e~F~F~GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 20 QYFEFRGDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred cEEEEEcCCeEEEEECCEEEEEccCc
Confidence 444567888999999999 8888765
No 17
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.48 E-value=1 Score=31.39 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEecCcCcccCCChHHHHhhhhCCCCch
Q 032893 27 VYNVTPFLEDHPGGDEVLLAATEKDATD 54 (131)
Q Consensus 27 VYDvT~f~~~HPGG~~~l~~~aG~D~T~ 54 (131)
-+|+..|+..||.|..++....+++.--
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~vM 92 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERVM 92 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHHH
Confidence 3799999999999999998888775443
No 18
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=46.77 E-value=33 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 032893 102 GSAAKILQFLVPMLILGIAFAFRY 125 (131)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~ 125 (131)
++...++-++.|++|+++.+++++
T Consensus 21 ~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 21 EFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555666778889999888877653
No 19
>PHA02131 hypothetical protein
Probab=46.65 E-value=14 Score=22.51 Aligned_cols=15 Identities=27% Similarity=0.837 Sum_probs=12.0
Q ss_pred CeEEEE-cCEEEecCc
Q 032893 18 DCWLVI-SGKVYNVTP 32 (131)
Q Consensus 18 ~~wvvi-~g~VYDvT~ 32 (131)
.||+.. +|+|-|+|=
T Consensus 30 ~c~imfk~~~v~dctf 45 (70)
T PHA02131 30 SCWIMFKNDQVIDCTF 45 (70)
T ss_pred EEEEEEcCCCEEEeee
Confidence 599976 788999873
No 20
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=42.51 E-value=17 Score=25.68 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=11.2
Q ss_pred eEEEEcCEEEecC
Q 032893 19 CWLVISGKVYNVT 31 (131)
Q Consensus 19 ~wvvi~g~VYDvT 31 (131)
.-|.|||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 4578999999996
No 21
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=39.31 E-value=5.9 Score=33.41 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCeEEEEcCEEEecCcCcccCCChHHHHhhhhCCCCchhhhhcCCCH
Q 032893 17 DDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSD 63 (131)
Q Consensus 17 ~~~wvvi~g~VYDvT~f~~~HPGG~~~l~~~aG~D~T~~f~~~~hs~ 63 (131)
+..+++|- -+|+..|+..||.|..++....|++.--.+- .|+.
T Consensus 367 d~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm--~h~d 409 (429)
T cd00256 367 DPIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL--NHED 409 (429)
T ss_pred Ccceeehh--hhhHHHHHHHCccHHHHHHHcCcHHHHHHHh--cCCC
Confidence 44666665 4899999999999999999998886543333 3554
No 22
>PRK06764 hypothetical protein; Provisional
Probab=38.93 E-value=32 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=14.1
Q ss_pred ccCCCCeEEEEcCEEEe
Q 032893 13 HNNRDDCWLVISGKVYN 29 (131)
Q Consensus 13 h~~~~~~wvvi~g~VYD 29 (131)
+++++...|.++|.+||
T Consensus 80 f~kpg~yvirvngciy~ 96 (105)
T PRK06764 80 FSKPGKYVIRVNGCIYN 96 (105)
T ss_pred ecCCccEEEEEccEEee
Confidence 56778888889999996
No 23
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.48 E-value=18 Score=29.58 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.9
Q ss_pred ccCCChHHHHhhhhCC-CCch
Q 032893 35 EDHPGGDEVLLAATEK-DATD 54 (131)
Q Consensus 35 ~~HPGG~~~l~~~aG~-D~T~ 54 (131)
.-||||.++|..+.+. .+++
T Consensus 275 ~~HPGG~KVida~~~sLgls~ 295 (356)
T COG3424 275 VVHPGGPKVIDAYEESLGLSP 295 (356)
T ss_pred eeCCCCchHHHHHHHhcCCCH
Confidence 3699999999988654 4444
No 24
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=31.56 E-value=54 Score=20.23 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=12.9
Q ss_pred CCeEEEEcCEEEecCcCc
Q 032893 17 DDCWLVISGKVYNVTPFL 34 (131)
Q Consensus 17 ~~~wvvi~g~VYDvT~f~ 34 (131)
.+..|.++|++|+|....
T Consensus 65 ~~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKSID 82 (95)
T ss_dssp TTEEEEECTEEEEE-S--
T ss_pred cceEEEECCEEEEEEEEC
Confidence 357788999999999854
No 25
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=41 Score=25.64 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=12.1
Q ss_pred HHHH-HHHHHHHHHhhcc
Q 032893 113 PMLI-LGIAFAFRYFSKK 129 (131)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~ 129 (131)
++.| -++.+|+|||+++
T Consensus 197 ~l~IiGav~lalRfylkk 214 (226)
T COG4858 197 ALTIIGAVILALRFYLKK 214 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3444 4468899999986
No 26
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=29.48 E-value=1.3e+02 Score=22.61 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 032893 102 GSAAKILQFLVPMLILGIAFAFRYFSK 128 (131)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (131)
|.+.=+..+++.|++++++|-+|-|.|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 444445678888988887666664443
No 27
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=29.13 E-value=53 Score=22.62 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCeEEEEcCEEEecCcCcccCCChH
Q 032893 17 DDCWLVISGKVYNVTPFLEDHPGGD 41 (131)
Q Consensus 17 ~~~wvvi~g~VYDvT~f~~~HPGG~ 41 (131)
+.|+|.|||.-|++.+=....|||.
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 4699999999999998788899984
No 28
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=28.92 E-value=20 Score=25.73 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=13.8
Q ss_pred CcccCCChHHHHhhhhCC-CCch
Q 032893 33 FLEDHPGGDEVLLAATEK-DATD 54 (131)
Q Consensus 33 f~~~HPGG~~~l~~~aG~-D~T~ 54 (131)
|..-||||.++|...... ++++
T Consensus 62 ~wavHPGG~~ILd~v~~~L~L~~ 84 (151)
T PF02797_consen 62 FWAVHPGGRKILDAVEEALGLSP 84 (151)
T ss_dssp EEEEE-SSHHHHHHHHHHHTS-G
T ss_pred eeeecCChHHHHHHHHHHcCCCH
Confidence 346799999998876543 4444
No 29
>PF15013 CCSMST1: CCSMST1 family
Probab=28.62 E-value=53 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 032893 112 VPMLILGIAFAFRYFSKKEE 131 (131)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ 131 (131)
.|+.+-.++|.+|||..++|
T Consensus 34 ~~is~sl~~fliyFC~lReE 53 (77)
T PF15013_consen 34 YPISLSLAAFLIYFCFLREE 53 (77)
T ss_pred ehhHHHHHHHHHHHhhcccc
Confidence 45555566677888877654
No 30
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.00 E-value=1.9e+02 Score=23.68 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=6.3
Q ss_pred HHHHHHHHHhh
Q 032893 117 LGIAFAFRYFS 127 (131)
Q Consensus 117 ~~~~~~~~~~~ 127 (131)
++++.++++|.
T Consensus 41 ~alg~~~~~~~ 51 (372)
T PF04375_consen 41 LALGAGGWYWQ 51 (372)
T ss_pred HHHHHHHHHHH
Confidence 55555666653
No 31
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=26.88 E-value=74 Score=19.38 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 032893 109 QFLVPMLILGIAFAFR 124 (131)
Q Consensus 109 ~~~~~~~~~~~~~~~~ 124 (131)
.+++|+.|+.+++++.
T Consensus 5 ~~Lipvsi~l~~v~l~ 20 (58)
T COG3197 5 YILIPVSILLGAVGLG 20 (58)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 4678877765555544
No 32
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=26.43 E-value=1.3e+02 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 032893 111 LVPMLILGIAFAFRYFSKK 129 (131)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~ 129 (131)
++.+++++++++.|+|+..
T Consensus 38 Vl~iIii~~~~~~Y~~~~~ 56 (416)
T PF04415_consen 38 VLIIIIIFIVYNIYYFLQN 56 (416)
T ss_pred hHhHHHHHHHHHHHHHhhh
Confidence 3445556677777777654
No 33
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=25.59 E-value=1.9e+02 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 032893 110 FLVPMLILGIAFAFRYFSK 128 (131)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~ 128 (131)
++..+++++++-|+|||..
T Consensus 41 ~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 41 AVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444445566666777653
No 34
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=22.33 E-value=57 Score=20.27 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=18.7
Q ss_pred CCccCHHHHhcccCCCCeEEEEcC
Q 032893 2 AKVHDFQEVAKHNNRDDCWLVISG 25 (131)
Q Consensus 2 ~~~~t~~ev~~h~~~~~~wvvi~g 25 (131)
|+++|+++|++.-..+.-..+++.
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ 40 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDA 40 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEEC
Confidence 578899999998888876666653
No 35
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=21.81 E-value=1.5e+02 Score=16.16 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032893 110 FLVPMLILGIAFAFRYF 126 (131)
Q Consensus 110 ~~~~~~~~~~~~~~~~~ 126 (131)
|.+.|+.+.+..+.+|+
T Consensus 18 Wa~llLaINflVAayYF 34 (37)
T PF08078_consen 18 WALLLLAINFLVAAYYF 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44544444444444443
Done!