Query 032894
Match_columns 131
No_of_seqs 174 out of 1049
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.5 1.1E-13 2.4E-18 117.4 6.7 73 53-125 129-212 (371)
2 PLN03165 chaperone protein dna 99.4 9.1E-13 2E-17 95.4 6.5 69 60-129 37-105 (111)
3 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.3 3.1E-12 6.8E-17 84.0 5.3 54 67-120 1-66 (66)
4 PRK14282 chaperone protein Dna 99.3 6.4E-12 1.4E-16 105.9 5.2 72 53-124 139-223 (369)
5 PRK14296 chaperone protein Dna 99.2 1.1E-11 2.4E-16 104.7 4.8 71 53-123 136-219 (372)
6 PRK14298 chaperone protein Dna 99.2 1.1E-11 2.3E-16 105.0 4.5 71 53-123 128-211 (377)
7 PRK14278 chaperone protein Dna 99.2 1.2E-11 2.6E-16 104.6 4.5 71 53-123 126-209 (378)
8 PRK14286 chaperone protein Dna 99.2 1.3E-11 2.8E-16 104.3 4.4 69 53-123 137-216 (372)
9 PRK14279 chaperone protein Dna 99.2 1.3E-11 2.8E-16 105.0 4.1 69 53-123 160-239 (392)
10 PRK14285 chaperone protein Dna 99.2 1.3E-11 2.8E-16 104.0 3.9 69 53-123 133-212 (365)
11 PRK14276 chaperone protein Dna 99.2 1.5E-11 3.1E-16 104.1 4.2 71 53-123 133-216 (380)
12 PRK14300 chaperone protein Dna 99.2 1.8E-11 3.8E-16 103.4 4.6 69 53-123 132-211 (372)
13 PRK14280 chaperone protein Dna 99.2 2.4E-11 5.1E-16 102.7 5.1 71 53-123 130-213 (376)
14 PRK14301 chaperone protein Dna 99.2 2.2E-11 4.7E-16 103.0 4.2 69 53-123 131-210 (373)
15 PRK14277 chaperone protein Dna 99.2 2.4E-11 5.1E-16 103.0 4.4 71 53-123 142-225 (386)
16 PRK10767 chaperone protein Dna 99.2 2.8E-11 6E-16 101.9 4.7 69 53-123 129-208 (371)
17 PRK14281 chaperone protein Dna 99.2 2.4E-11 5.2E-16 103.4 4.2 71 53-123 150-232 (397)
18 PRK14295 chaperone protein Dna 99.2 2.7E-11 5.9E-16 102.9 4.4 70 53-124 153-233 (389)
19 TIGR02349 DnaJ_bact chaperone 99.2 3.7E-11 8.1E-16 100.4 5.1 71 53-123 130-213 (354)
20 PRK14284 chaperone protein Dna 99.2 3E-11 6.5E-16 102.6 4.6 69 53-123 145-224 (391)
21 PRK14289 chaperone protein Dna 99.1 3.7E-11 8E-16 101.7 4.6 72 53-124 141-225 (386)
22 PRK14294 chaperone protein Dna 99.1 4.1E-11 9E-16 100.9 4.6 69 53-123 131-210 (366)
23 PRK14297 chaperone protein Dna 99.1 5E-11 1.1E-15 100.8 4.4 70 53-122 135-217 (380)
24 PRK14293 chaperone protein Dna 99.1 7.1E-11 1.5E-15 99.7 4.6 71 53-123 130-213 (374)
25 PTZ00037 DnaJ_C chaperone prot 99.1 7.8E-11 1.7E-15 101.4 4.7 72 53-124 137-222 (421)
26 PRK14290 chaperone protein Dna 99.1 1E-10 2.2E-15 98.4 5.1 72 53-124 136-219 (365)
27 PRK14288 chaperone protein Dna 99.1 1.8E-10 3.9E-15 97.3 5.7 70 53-124 127-206 (369)
28 PRK14291 chaperone protein Dna 99.1 1.2E-10 2.6E-15 98.6 4.6 69 53-123 143-221 (382)
29 PRK14283 chaperone protein Dna 99.1 1.5E-10 3.2E-15 97.9 4.7 71 53-123 133-216 (378)
30 PRK14287 chaperone protein Dna 99.1 1.9E-10 4.1E-15 97.2 5.2 71 53-123 125-208 (371)
31 PRK14292 chaperone protein Dna 99.0 2.3E-10 4.9E-15 96.4 4.2 71 53-123 126-210 (371)
32 KOG0712 Molecular chaperone (D 98.8 7.1E-09 1.5E-13 87.3 4.3 65 58-122 121-198 (337)
33 KOG2813 Predicted molecular ch 98.1 1.4E-06 3E-11 73.6 2.8 61 65-125 188-271 (406)
34 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.1 2.5E-06 5.4E-11 55.9 3.2 47 54-109 4-66 (66)
35 COG1107 Archaea-specific RecJ- 98.1 3.2E-06 7E-11 75.9 3.6 61 65-125 3-83 (715)
36 PRK14288 chaperone protein Dna 98.0 4.4E-06 9.5E-11 70.7 2.7 78 24-111 113-204 (369)
37 KOG2813 Predicted molecular ch 98.0 7.1E-06 1.5E-10 69.3 3.7 10 101-110 258-267 (406)
38 COG0484 DnaJ DnaJ-class molecu 97.7 2.4E-05 5.3E-10 66.9 3.4 81 21-111 112-209 (371)
39 PRK14287 chaperone protein Dna 97.6 2.3E-05 5E-10 66.4 1.4 70 32-111 120-207 (371)
40 COG1107 Archaea-specific RecJ- 97.4 0.00015 3.2E-09 65.5 3.8 24 65-88 54-81 (715)
41 PLN03165 chaperone protein dna 97.0 0.00046 1E-08 50.1 2.5 33 66-111 54-98 (111)
42 PRK14281 chaperone protein Dna 97.0 0.00049 1.1E-08 58.8 3.1 70 32-111 145-231 (397)
43 PRK14296 chaperone protein Dna 97.0 0.00056 1.2E-08 58.1 3.4 78 24-111 122-218 (372)
44 PRK14290 chaperone protein Dna 97.0 0.00053 1.2E-08 57.9 3.1 78 24-111 122-217 (365)
45 PRK14298 chaperone protein Dna 97.0 0.00046 1E-08 58.7 2.7 70 32-111 123-210 (377)
46 PRK14279 chaperone protein Dna 97.0 0.00044 9.5E-09 59.1 2.5 70 32-111 155-238 (392)
47 PRK14278 chaperone protein Dna 96.9 0.00071 1.5E-08 57.5 3.2 70 32-111 121-208 (378)
48 PRK14300 chaperone protein Dna 96.9 0.00064 1.4E-08 57.6 2.8 78 24-111 118-210 (372)
49 PRK14286 chaperone protein Dna 96.9 0.00067 1.5E-08 57.6 2.9 78 24-111 123-215 (372)
50 PRK14301 chaperone protein Dna 96.9 0.00071 1.5E-08 57.4 2.7 78 24-111 117-209 (373)
51 PRK14295 chaperone protein Dna 96.8 0.00087 1.9E-08 57.3 2.9 70 32-111 148-231 (389)
52 PRK14280 chaperone protein Dna 96.8 0.0008 1.7E-08 57.1 2.7 70 32-111 125-212 (376)
53 PRK14282 chaperone protein Dna 96.8 0.00092 2E-08 56.6 3.0 78 24-111 125-221 (369)
54 PTZ00037 DnaJ_C chaperone prot 96.8 0.0011 2.5E-08 57.3 3.3 80 24-111 123-220 (421)
55 PRK10767 chaperone protein Dna 96.8 0.001 2.2E-08 56.3 2.8 70 32-111 124-207 (371)
56 TIGR02349 DnaJ_bact chaperone 96.8 0.001 2.2E-08 55.7 2.8 70 32-111 125-212 (354)
57 PRK14285 chaperone protein Dna 96.8 0.00081 1.8E-08 56.9 2.2 70 32-111 128-211 (365)
58 PRK14294 chaperone protein Dna 96.7 0.0011 2.4E-08 56.0 2.7 78 24-111 117-209 (366)
59 PRK14277 chaperone protein Dna 96.7 0.0012 2.5E-08 56.3 2.7 70 32-111 137-224 (386)
60 PRK14284 chaperone protein Dna 96.7 0.00087 1.9E-08 57.2 2.0 70 32-111 140-223 (391)
61 PRK14276 chaperone protein Dna 96.6 0.00097 2.1E-08 56.7 1.8 70 32-111 128-215 (380)
62 PRK14289 chaperone protein Dna 96.6 0.0012 2.7E-08 56.0 2.4 70 32-111 136-223 (386)
63 PRK14297 chaperone protein Dna 96.5 0.0017 3.6E-08 55.2 2.2 70 32-111 130-217 (380)
64 PRK14293 chaperone protein Dna 96.4 0.0024 5.2E-08 54.2 2.7 78 24-111 116-212 (374)
65 KOG2824 Glutaredoxin-related p 96.3 0.0048 1E-07 51.1 3.9 51 65-117 230-280 (281)
66 PRK14292 chaperone protein Dna 96.3 0.0031 6.8E-08 53.3 2.8 78 24-111 112-209 (371)
67 PRK14283 chaperone protein Dna 96.2 0.0032 7E-08 53.4 2.8 70 32-111 128-215 (378)
68 PRK14291 chaperone protein Dna 96.2 0.0045 9.8E-08 52.7 3.2 69 32-111 138-220 (382)
69 KOG0715 Molecular chaperone (D 96.1 0.0019 4.1E-08 53.4 0.8 68 53-122 151-229 (288)
70 TIGR02642 phage_xxxx uncharact 95.7 0.0065 1.4E-07 47.7 2.1 13 76-88 100-112 (186)
71 TIGR02642 phage_xxxx uncharact 95.7 0.0069 1.5E-07 47.5 2.0 31 59-89 94-129 (186)
72 cd03031 GRX_GRX_like Glutaredo 94.7 0.041 9E-07 41.4 3.6 49 64-113 99-147 (147)
73 KOG0712 Molecular chaperone (D 90.1 0.21 4.6E-06 42.5 2.3 80 24-111 100-198 (337)
74 cd03031 GRX_GRX_like Glutaredo 89.7 0.31 6.8E-06 36.6 2.7 34 76-122 100-145 (147)
75 KOG2824 Glutaredoxin-related p 85.0 0.88 1.9E-05 37.9 3.0 35 76-123 230-275 (281)
76 TIGR00630 uvra excinuclease AB 83.5 0.86 1.9E-05 43.4 2.6 33 77-110 738-770 (924)
77 PF07092 DUF1356: Protein of u 78.2 1.1 2.5E-05 36.5 1.3 26 64-89 27-52 (238)
78 PRK00349 uvrA excinuclease ABC 75.8 2 4.3E-05 41.1 2.4 33 77-110 740-772 (943)
79 KOG0715 Molecular chaperone (D 75.7 1 2.3E-05 37.2 0.4 70 32-111 146-229 (288)
80 PRK00635 excinuclease ABC subu 73.6 2.4 5.3E-05 43.2 2.5 32 77-110 1609-1641(1809)
81 TIGR00630 uvra excinuclease AB 70.8 2.2 4.9E-05 40.7 1.4 32 58-89 729-773 (924)
82 PF07092 DUF1356: Protein of u 66.5 2.8 6.1E-05 34.2 1.0 24 99-122 27-50 (238)
83 COG0178 UvrA Excinuclease ATPa 60.4 8.3 0.00018 36.9 3.0 34 76-110 731-764 (935)
84 PRK00349 uvrA excinuclease ABC 59.4 4.6 0.0001 38.7 1.2 31 59-89 732-775 (943)
85 TIGR00595 priA primosomal prot 58.1 16 0.00034 32.4 4.2 51 62-121 211-264 (505)
86 PRK00635 excinuclease ABC subu 57.4 5.7 0.00012 40.7 1.5 31 59-89 1601-1644(1809)
87 COG1198 PriA Primosomal protei 57.3 19 0.0004 33.8 4.7 50 61-119 432-484 (730)
88 PRK04023 DNA polymerase II lar 57.3 13 0.00028 36.3 3.7 57 51-118 611-671 (1121)
89 TIGR03655 anti_R_Lar restricti 54.6 17 0.00037 22.3 2.9 14 76-89 2-15 (53)
90 COG0178 UvrA Excinuclease ATPa 52.2 7.3 0.00016 37.3 1.2 32 58-89 723-767 (935)
91 PF13719 zinc_ribbon_5: zinc-r 47.4 14 0.0003 21.3 1.5 11 77-87 4-14 (37)
92 PRK05580 primosome assembly pr 42.7 25 0.00055 32.3 3.1 50 63-120 380-431 (679)
93 PF14354 Lar_restr_allev: Rest 42.4 27 0.00057 21.6 2.4 14 76-90 4-17 (61)
94 PF14353 CpXC: CpXC protein 41.7 28 0.00062 24.7 2.7 36 76-111 2-50 (128)
95 TIGR02098 MJ0042_CXXC MJ0042 f 41.6 23 0.0005 19.9 1.8 8 77-84 4-11 (38)
96 PRK14873 primosome assembly pr 41.1 31 0.00067 31.9 3.4 50 63-121 382-433 (665)
97 PF03589 Antiterm: Antitermina 40.8 12 0.00027 26.1 0.7 35 76-111 6-44 (95)
98 PRK14890 putative Zn-ribbon RN 38.5 36 0.00077 22.2 2.5 6 76-81 26-31 (59)
99 PF08273 Prim_Zn_Ribbon: Zinc- 37.5 22 0.00048 21.2 1.3 12 77-88 5-16 (40)
100 PF14803 Nudix_N_2: Nudix N-te 37.4 28 0.00061 20.0 1.7 28 77-106 2-29 (34)
101 PF08792 A2L_zn_ribbon: A2L zi 34.9 30 0.00065 19.7 1.5 13 76-88 4-16 (33)
102 PF03660 PHF5: PHF5-like prote 31.7 25 0.00054 25.4 1.0 50 64-125 20-71 (106)
103 smart00709 Zpr1 Duplicated dom 31.5 46 0.00099 25.3 2.5 32 77-108 2-38 (160)
104 PRK05978 hypothetical protein; 31.1 24 0.00053 26.7 1.0 12 95-106 48-59 (148)
105 PRK14714 DNA polymerase II lar 30.2 49 0.0011 33.2 3.0 44 64-118 667-717 (1337)
106 PF05180 zf-DNL: DNL zinc fing 29.6 30 0.00065 22.9 1.1 11 112-122 31-41 (66)
107 PF13901 DUF4206: Domain of un 27.8 31 0.00067 26.9 1.1 47 65-117 143-196 (202)
108 PF00098 zf-CCHC: Zinc knuckle 27.6 42 0.00091 16.4 1.2 11 101-111 2-12 (18)
109 TIGR00310 ZPR1_znf ZPR1 zinc f 27.4 79 0.0017 24.8 3.3 32 77-108 2-39 (192)
110 PRK14559 putative protein seri 25.0 46 0.001 30.8 1.8 41 65-117 2-48 (645)
111 PRK00488 pheS phenylalanyl-tRN 24.9 49 0.0011 28.3 1.9 28 59-89 255-282 (339)
112 smart00440 ZnF_C2C2 C2C2 Zinc 24.2 1.2E+02 0.0026 17.6 2.9 30 77-106 2-35 (40)
113 PF03367 zf-ZPR1: ZPR1 zinc-fi 23.5 1.1E+02 0.0023 23.2 3.3 32 77-108 3-39 (161)
114 PF08271 TF_Zn_Ribbon: TFIIB z 23.2 79 0.0017 18.4 2.1 9 77-85 2-10 (43)
115 PRK12380 hydrogenase nickel in 22.4 66 0.0014 22.9 1.9 30 59-88 65-99 (113)
116 PF14599 zinc_ribbon_6: Zinc-r 21.6 35 0.00076 22.1 0.3 10 64-73 30-39 (61)
117 PF01096 TFIIS_C: Transcriptio 21.5 1.3E+02 0.0027 17.4 2.7 30 77-106 2-35 (39)
118 smart00778 Prim_Zn_Ribbon Zinc 21.1 71 0.0015 18.7 1.5 12 77-88 5-16 (37)
119 PF01155 HypA: Hydrogenase exp 20.8 65 0.0014 22.8 1.5 31 59-89 65-100 (113)
120 PF03833 PolC_DP2: DNA polymer 20.7 33 0.00071 33.0 0.0 58 51-119 639-701 (900)
121 PF12387 Peptidase_C74: Pestiv 20.5 48 0.001 26.2 0.9 32 58-89 155-189 (200)
122 PF09723 Zn-ribbon_8: Zinc rib 20.4 1.2E+02 0.0026 17.7 2.4 9 99-107 26-34 (42)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.1e-13 Score=117.35 Aligned_cols=73 Identities=33% Similarity=0.615 Sum_probs=64.3
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
|..|. ++.+++.+.|+.|+|+|+ ++|++|+|+|++...+..|.++++++|+.|+|+|++ +|++|+|.|+
T Consensus 129 a~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~ 208 (371)
T COG0484 129 AVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR 208 (371)
T ss_pred hccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence 66676 689999999999999988 799999999998875333889999999999999998 9999999999
Q ss_pred EeEe
Q 032894 122 VGGF 125 (131)
Q Consensus 122 v~~~ 125 (131)
+.-+
T Consensus 209 v~~~ 212 (371)
T COG0484 209 VKKK 212 (371)
T ss_pred Eeee
Confidence 7543
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.38 E-value=9.1e-13 Score=95.40 Aligned_cols=69 Identities=32% Similarity=0.766 Sum_probs=61.1
Q ss_pred cccceeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecccCCCCceEEeEecccc
Q 032894 60 TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQ 129 (131)
Q Consensus 60 ~~~r~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C~~C~G~G~v~~~l~~~ 129 (131)
+....+.|..|+|+|...|+.|+|+|.+.... .+.++.+.+|+.|.|+|+..|+.|+|+|++..||..|
T Consensus 37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~-~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~ 105 (111)
T PLN03165 37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL-GGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR 105 (111)
T ss_pred hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe-CCcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence 34567899999999999999999999998753 3457789999999999999999999999999999876
No 3
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.32 E-value=3.1e-12 Score=84.02 Aligned_cols=54 Identities=41% Similarity=0.968 Sum_probs=44.7
Q ss_pred CCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee----cccCCCCce
Q 032894 67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM----LCGNCNGAG 120 (131)
Q Consensus 67 C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~----~C~~C~G~G 120 (131)
|+.|+|+|. .+|+.|+|+|+++..+ +.+.++++.+|+.|+|+|++ +|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999999 7899999999998853 44678999999999999997 799999986
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=6.4e-12 Score=105.86 Aligned_cols=72 Identities=28% Similarity=0.652 Sum_probs=61.9
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ .+|+++++.+|+.|.|+|++ +|+.|+|.
T Consensus 139 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 218 (369)
T PRK14282 139 LINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGS 218 (369)
T ss_pred hcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCc
Confidence 44566 577889999999999997 6899999999998743 45888889999999999997 99999999
Q ss_pred eEEeE
Q 032894 120 GFVGG 124 (131)
Q Consensus 120 G~v~~ 124 (131)
|++..
T Consensus 219 g~v~~ 223 (369)
T PRK14282 219 GRIRR 223 (369)
T ss_pred eeEEE
Confidence 98743
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.1e-11 Score=104.71 Aligned_cols=71 Identities=28% Similarity=0.534 Sum_probs=61.0
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCc--eecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|..|+|+|. .+|+.|+|+|+++..+..|+ ++.+.+|+.|.|+|++ +|+.|+|+
T Consensus 136 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~ 215 (372)
T PRK14296 136 LLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGK 215 (372)
T ss_pred hhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCc
Confidence 45566 688899999999999997 67999999999988665665 4567899999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 216 g~v~ 219 (372)
T PRK14296 216 GKYL 219 (372)
T ss_pred eEEE
Confidence 9873
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.1e-11 Score=105.04 Aligned_cols=71 Identities=31% Similarity=0.593 Sum_probs=61.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ +.|.++.+.+|+.|.|+|++ +|+.|+|+
T Consensus 128 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (377)
T PRK14298 128 AAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGT 207 (377)
T ss_pred hhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence 44566 578899999999999998 6899999999998743 34668899999999999987 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 208 g~v~ 211 (377)
T PRK14298 208 GKVR 211 (377)
T ss_pred cEEE
Confidence 9874
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.2e-11 Score=104.65 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=61.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEe--ecCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~--~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++.. .+.|+++.+.+|+.|.|+|++ +|+.|+|+
T Consensus 126 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 205 (378)
T PRK14278 126 CATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGD 205 (378)
T ss_pred hcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCc
Confidence 44566 578899999999999997 689999999998774 345778888999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 206 g~v~ 209 (378)
T PRK14278 206 GRVR 209 (378)
T ss_pred eeEe
Confidence 9873
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.3e-11 Score=104.28 Aligned_cols=69 Identities=33% Similarity=0.681 Sum_probs=61.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++++.+.|+.|+|+|. ..|+.|+|+|+++.. .|+++++.+|+.|.|+|++ +|+.|+|+|+
T Consensus 137 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 214 (372)
T PRK14286 137 AALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT--QGFFSVATTCPTCRGKGTVISNPCKTCGGQGL 214 (372)
T ss_pred HhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE--eceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence 44566 578899999999999997 689999999998776 4888899999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 215 ~~ 216 (372)
T PRK14286 215 QE 216 (372)
T ss_pred Ee
Confidence 74
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.3e-11 Score=104.97 Aligned_cols=69 Identities=32% Similarity=0.712 Sum_probs=60.7
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. .+|+.|+|+|+++.. .|+++++.+|+.|.|+|++ +|+.|+|.|+
T Consensus 160 ~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~ 237 (392)
T PRK14279 160 AAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN--QGAFGFSEPCTDCRGTGSIIEDPCEECKGTGV 237 (392)
T ss_pred HhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEE--ecceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence 44566 577899999999999997 679999999998876 4777889999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 238 v~ 239 (392)
T PRK14279 238 TT 239 (392)
T ss_pred EE
Confidence 74
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.3e-11 Score=104.04 Aligned_cols=69 Identities=28% Similarity=0.648 Sum_probs=60.7
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++++.+.|..|+|+|. ..|+.|+|+|+++.. .|+++.+.+|+.|.|+|++ +|+.|+|+|+
T Consensus 133 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 210 (365)
T PRK14285 133 AYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG--GGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS 210 (365)
T ss_pred hhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec--CceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence 44566 578899999999999997 679999999998864 5888899999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 211 v~ 212 (365)
T PRK14285 211 LK 212 (365)
T ss_pred Ee
Confidence 73
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.5e-11 Score=104.14 Aligned_cols=71 Identities=32% Similarity=0.667 Sum_probs=61.4
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++.+.+|+.|.|+|++ +|+.|+|.
T Consensus 133 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (380)
T PRK14276 133 AIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGT 212 (380)
T ss_pred hcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCc
Confidence 44566 588899999999999997 6899999999998753 35778889999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 213 g~~~ 216 (380)
T PRK14276 213 GHEK 216 (380)
T ss_pred eEEE
Confidence 9874
No 12
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=1.8e-11 Score=103.37 Aligned_cols=69 Identities=28% Similarity=0.668 Sum_probs=60.8
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. .+|+.|+|+|+++.. .|+++++.+|+.|.|+|++ +|+.|+|+|+
T Consensus 132 ~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 209 (372)
T PRK14300 132 AFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ--QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGR 209 (372)
T ss_pred HhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEe--eceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence 44566 578899999999999996 789999999998865 5888889999999999997 9999999999
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 210 v~ 211 (372)
T PRK14300 210 YH 211 (372)
T ss_pred EE
Confidence 84
No 13
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=2.4e-11 Score=102.73 Aligned_cols=71 Identities=31% Similarity=0.585 Sum_probs=61.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++.+.+|+.|.|+|++ +|+.|+|+
T Consensus 130 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (376)
T PRK14280 130 AVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGK 209 (376)
T ss_pred HhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCc
Confidence 44566 588899999999999997 6899999999987743 35778889999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 210 g~v~ 213 (376)
T PRK14280 210 GKVR 213 (376)
T ss_pred eEEE
Confidence 9874
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.2e-11 Score=102.95 Aligned_cols=69 Identities=35% Similarity=0.737 Sum_probs=60.6
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|++... .|+++++.+|+.|.|+|++ +|+.|+|+|+
T Consensus 131 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (373)
T PRK14301 131 AAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS--QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGI 208 (373)
T ss_pred HhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEE--eeeEEEEEeCCCCCceeeecCCCCCCCCCCce
Confidence 44566 577889999999999997 679999999998865 4888889999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 209 v~ 210 (373)
T PRK14301 209 VQ 210 (373)
T ss_pred ec
Confidence 73
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.4e-11 Score=103.04 Aligned_cols=71 Identities=28% Similarity=0.541 Sum_probs=61.0
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. .+|+.|+|+|+++..+ ..|+++...+|+.|.|+|++ +|+.|+|+
T Consensus 142 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 221 (386)
T PRK14277 142 AAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGT 221 (386)
T ss_pred HhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCC
Confidence 44566 578899999999999997 6899999999988743 35778888999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 222 g~v~ 225 (386)
T PRK14277 222 GRIR 225 (386)
T ss_pred cEEe
Confidence 9873
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.8e-11 Score=101.90 Aligned_cols=69 Identities=30% Similarity=0.671 Sum_probs=60.5
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+.+.+.+.|+.|+|+|. ..|+.|+|+|+++..+ |+++.+.+|+.|.|+|++ +|+.|+|+|+
T Consensus 129 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 206 (371)
T PRK10767 129 AVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR 206 (371)
T ss_pred hhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence 44566 578899999999999997 5899999999988763 888889999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 207 v~ 208 (371)
T PRK10767 207 VE 208 (371)
T ss_pred Ee
Confidence 74
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.4e-11 Score=103.43 Aligned_cols=71 Identities=31% Similarity=0.639 Sum_probs=60.8
Q ss_pred ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEe--ecCCceecceecCCcccccee---cccCCCCce
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGGKRDM---LCGNCNGAG 120 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~--~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G 120 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++.. .+.|+++.+.+|+.|.|+|++ +|+.|+|.|
T Consensus 150 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 229 (397)
T PRK14281 150 IAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEG 229 (397)
T ss_pred HhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCc
Confidence 44455 577899999999999997 679999999998774 345778888999999999997 999999999
Q ss_pred EEe
Q 032894 121 FVG 123 (131)
Q Consensus 121 ~v~ 123 (131)
++.
T Consensus 230 ~v~ 232 (397)
T PRK14281 230 IKQ 232 (397)
T ss_pred cEe
Confidence 874
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=2.7e-11 Score=102.92 Aligned_cols=70 Identities=27% Similarity=0.601 Sum_probs=61.1
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++... |.++.+.+|+.|.|+|++ +|+.|+|+|+
T Consensus 153 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 230 (389)
T PRK14295 153 AIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFSLSEPCPDCKGRGLIADDPCLVCKGSGR 230 (389)
T ss_pred HhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence 44566 678899999999999997 6899999999998763 778889999999999997 9999999998
Q ss_pred EeE
Q 032894 122 VGG 124 (131)
Q Consensus 122 v~~ 124 (131)
+..
T Consensus 231 ~~~ 233 (389)
T PRK14295 231 AKS 233 (389)
T ss_pred Eee
Confidence 743
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.15 E-value=3.7e-11 Score=100.38 Aligned_cols=71 Identities=30% Similarity=0.589 Sum_probs=60.8
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeec--CCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~--~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+. .|+++++.+|+.|.|+|++ +|+.|+|+
T Consensus 130 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (354)
T TIGR02349 130 AVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGK 209 (354)
T ss_pred HhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCC
Confidence 44465 577899999999999996 67999999999988543 4678888999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 210 g~v~ 213 (354)
T TIGR02349 210 GRVK 213 (354)
T ss_pred cEec
Confidence 9874
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=3e-11 Score=102.57 Aligned_cols=69 Identities=33% Similarity=0.690 Sum_probs=60.5
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++.. .|+++++.+|+.|.|+|++ +|+.|+|.|+
T Consensus 145 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (391)
T PRK14284 145 AAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQS--RGFFSMASTCPECGGEGRVITDPCSVCRGQGR 222 (391)
T ss_pred HhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEE--eceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence 44566 577899999999999998 679999999998876 3888899999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 223 v~ 224 (391)
T PRK14284 223 IK 224 (391)
T ss_pred ec
Confidence 73
No 21
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=3.7e-11 Score=101.69 Aligned_cols=72 Identities=31% Similarity=0.659 Sum_probs=61.7
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++.+.+|+.|.|+|++ +|+.|+|+
T Consensus 141 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (386)
T PRK14289 141 ISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGE 220 (386)
T ss_pred hhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCC
Confidence 44455 577899999999999997 7899999999998854 34778889999999999997 99999999
Q ss_pred eEEeE
Q 032894 120 GFVGG 124 (131)
Q Consensus 120 G~v~~ 124 (131)
|++..
T Consensus 221 g~v~~ 225 (386)
T PRK14289 221 GIVYG 225 (386)
T ss_pred cEEee
Confidence 98743
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=4.1e-11 Score=100.86 Aligned_cols=69 Identities=32% Similarity=0.657 Sum_probs=60.5
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++.. .|+++.+.+|+.|.|+|++ +|+.|+|.|+
T Consensus 131 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 131 AAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS--QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred hcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEE--eeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence 44566 577889999999999997 589999999998765 4888899999999999997 9999999998
Q ss_pred Ee
Q 032894 122 VG 123 (131)
Q Consensus 122 v~ 123 (131)
+.
T Consensus 209 v~ 210 (366)
T PRK14294 209 VR 210 (366)
T ss_pred ee
Confidence 74
No 23
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=5e-11 Score=100.80 Aligned_cols=70 Identities=31% Similarity=0.648 Sum_probs=60.6
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++.+.+|+.|.|+|++ +|..|+|.
T Consensus 135 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 214 (380)
T PRK14297 135 AVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGK 214 (380)
T ss_pred hcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCC
Confidence 44566 578899999999999997 6799999999987743 45778889999999999997 99999999
Q ss_pred eEE
Q 032894 120 GFV 122 (131)
Q Consensus 120 G~v 122 (131)
|++
T Consensus 215 g~v 217 (380)
T PRK14297 215 GKV 217 (380)
T ss_pred eEE
Confidence 976
No 24
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=7.1e-11 Score=99.71 Aligned_cols=71 Identities=28% Similarity=0.549 Sum_probs=60.6
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++++.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++++.+|+.|.|+|++ +|+.|+|+
T Consensus 130 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (374)
T PRK14293 130 AIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQ 209 (374)
T ss_pred HhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCC
Confidence 34455 578899999999999998 6799999999988754 34778888999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 210 g~v~ 213 (374)
T PRK14293 210 GVKQ 213 (374)
T ss_pred cccc
Confidence 9873
No 25
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.10 E-value=7.8e-11 Score=101.36 Aligned_cols=72 Identities=28% Similarity=0.647 Sum_probs=60.1
Q ss_pred ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc--eecceecCCcccccee-----cccCCCC
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM-----LCGNCNG 118 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~-----~C~~C~G 118 (131)
+..|. .+++.+.+.|+.|+|+|. .+|+.|+|+|+++..+..|. ++++.+|+.|.|+|++ +|+.|+|
T Consensus 137 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G 216 (421)
T PTZ00037 137 IYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSG 216 (421)
T ss_pred HhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCC
Confidence 44565 578899999999999998 68999999999777554564 4678999999999986 7999999
Q ss_pred ceEEeE
Q 032894 119 AGFVGG 124 (131)
Q Consensus 119 ~G~v~~ 124 (131)
+|++..
T Consensus 217 ~g~v~~ 222 (421)
T PTZ00037 217 KGVKKT 222 (421)
T ss_pred cceeee
Confidence 998843
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1e-10 Score=98.42 Aligned_cols=72 Identities=33% Similarity=0.705 Sum_probs=61.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCce--ecceecCCcccccee---cccCCCCce
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF--KAGDSCWLCGGKRDM---LCGNCNGAG 120 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~~--~~~~~C~~C~G~G~~---~C~~C~G~G 120 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+.+|++ +.+.+|+.|.|+|++ +|+.|+|+|
T Consensus 136 ~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 215 (365)
T PRK14290 136 AYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTG 215 (365)
T ss_pred hcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCce
Confidence 44455 578899999999999998 689999999999887666765 457899999999987 999999999
Q ss_pred EEeE
Q 032894 121 FVGG 124 (131)
Q Consensus 121 ~v~~ 124 (131)
++..
T Consensus 216 ~v~~ 219 (365)
T PRK14290 216 TVVV 219 (365)
T ss_pred eEEE
Confidence 9754
No 27
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=1.8e-10 Score=97.27 Aligned_cols=70 Identities=30% Similarity=0.640 Sum_probs=60.7
Q ss_pred ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceEE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFV 122 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v 122 (131)
+..|. ++++++.+.|+.|+|+|. ..|+.|+|+|+++.. .|+++++.+|+.|.|+|++ +|+.|+|.|++
T Consensus 127 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 204 (369)
T PRK14288 127 AVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMR--QGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI 204 (369)
T ss_pred HhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEE--eceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence 44566 678889999999999997 689999999998776 4778888899999999997 99999999987
Q ss_pred eE
Q 032894 123 GG 124 (131)
Q Consensus 123 ~~ 124 (131)
..
T Consensus 205 ~~ 206 (369)
T PRK14288 205 LK 206 (369)
T ss_pred EE
Confidence 43
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=1.2e-10 Score=98.62 Aligned_cols=69 Identities=35% Similarity=0.731 Sum_probs=60.2
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCCCCceEE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNCNGAGFV 122 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G~v 122 (131)
+..|. .+++.+.+.|..|+|+|. ..|+.|+|+|+++.. .|+++.+.+|+.|.|+|.+ +|+.|+|.|++
T Consensus 143 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v 220 (382)
T PRK14291 143 AYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR--GGFFRISQTCPTCGGEGVLREPCSKCNGRGLV 220 (382)
T ss_pred hhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEe--cceEEEEecCCCCCCceEEccCCCCCCCCceE
Confidence 44466 578899999999999996 689999999998876 4778889999999999977 99999999987
Q ss_pred e
Q 032894 123 G 123 (131)
Q Consensus 123 ~ 123 (131)
.
T Consensus 221 ~ 221 (382)
T PRK14291 221 I 221 (382)
T ss_pred E
Confidence 4
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=1.5e-10 Score=97.89 Aligned_cols=71 Identities=31% Similarity=0.591 Sum_probs=60.8
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|+++..+ ..|+++.+.+|+.|.|+|+. +|..|+|+
T Consensus 133 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (378)
T PRK14283 133 AASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGK 212 (378)
T ss_pred HhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCc
Confidence 44566 577889999999999997 6799999999998754 34778888999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|.+.
T Consensus 213 g~v~ 216 (378)
T PRK14283 213 GVVR 216 (378)
T ss_pred eeec
Confidence 9873
No 30
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=1.9e-10 Score=97.19 Aligned_cols=71 Identities=31% Similarity=0.598 Sum_probs=61.1
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA 119 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 119 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|++...+ ..|+++.+.+|+.|.|+|++ +|..|.|.
T Consensus 125 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 204 (371)
T PRK14287 125 AVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGK 204 (371)
T ss_pred hcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCe
Confidence 44566 688899999999999996 6799999999987743 45778889999999999997 99999999
Q ss_pred eEEe
Q 032894 120 GFVG 123 (131)
Q Consensus 120 G~v~ 123 (131)
|++.
T Consensus 205 g~v~ 208 (371)
T PRK14287 205 GKVR 208 (371)
T ss_pred eEEe
Confidence 9874
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=2.3e-10 Score=96.38 Aligned_cols=71 Identities=24% Similarity=0.530 Sum_probs=60.5
Q ss_pred ecccC--cccccceeeCCCCCcCCc-------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCC
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNG 118 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~-------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G 118 (131)
+..|. .+++.+.+.|+.|+|+|. ..|+.|+|+|++...+ ..|+++++.+|+.|.|.|+. +|+.|.|
T Consensus 126 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 205 (371)
T PRK14292 126 ARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRG 205 (371)
T ss_pred HcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCC
Confidence 33455 577889999999999996 5799999999998743 45888889999999999997 9999999
Q ss_pred ceEEe
Q 032894 119 AGFVG 123 (131)
Q Consensus 119 ~G~v~ 123 (131)
+|++.
T Consensus 206 ~g~v~ 210 (371)
T PRK14292 206 RGRTL 210 (371)
T ss_pred ceEEe
Confidence 99873
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.1e-09 Score=87.32 Aligned_cols=65 Identities=29% Similarity=0.627 Sum_probs=57.8
Q ss_pred cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc---eecceecCCcccccee-----cccCCCCceEE
Q 032894 58 GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ---FKAGDSCWLCGGKRDM-----LCGNCNGAGFV 122 (131)
Q Consensus 58 ~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~---~~~~~~C~~C~G~G~~-----~C~~C~G~G~v 122 (131)
.+.++++.+|+.|+|+|. ..|+.|.|+|..+..++.|. .+++..|..|.|.|.. .|+.|+|++++
T Consensus 121 kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 121 KLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVV 198 (337)
T ss_pred ceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhh
Confidence 577899999999999999 67999999999998665654 4578999999999997 99999999987
No 33
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.4e-06 Score=73.58 Aligned_cols=61 Identities=31% Similarity=0.716 Sum_probs=41.3
Q ss_pred eeCCCCCcCCcccCCCCCCccEEEE--------eecCCc---------------eecceecCCccccceecccCCCCceE
Q 032894 65 VVCADCDGNGAVLCSQCKGSGVNAV--------DFFGGQ---------------FKAGDSCWLCGGKRDMLCGNCNGAGF 121 (131)
Q Consensus 65 ~~C~~C~GsG~~~C~~C~GsG~~~~--------~~~~G~---------------~~~~~~C~~C~G~G~~~C~~C~G~G~ 121 (131)
..|..|.|.|...|+.|+|+|.... ....|. =....+|++|+|+|+++|.+|.|.|.
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs 267 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS 267 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence 5688888888888888888884221 111221 01235778888888888888888887
Q ss_pred EeEe
Q 032894 122 VGGF 125 (131)
Q Consensus 122 v~~~ 125 (131)
+..|
T Consensus 268 ll~~ 271 (406)
T KOG2813|consen 268 LLNY 271 (406)
T ss_pred eeee
Confidence 7655
No 34
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.12 E-value=2.5e-06 Score=55.87 Aligned_cols=47 Identities=28% Similarity=0.772 Sum_probs=32.9
Q ss_pred cccCcc-cccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecCCceecceecCCccccc
Q 032894 54 AANNGN-TKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKR 109 (131)
Q Consensus 54 ~~g~~~-~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G 109 (131)
+.|.+. .-.....|+.|+|+|. .+|+.|+|+|.++ . ..+|+.|.|.|
T Consensus 4 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------~~~C~~C~G~g 66 (66)
T PF00684_consen 4 CNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------KDPCKTCKGSG 66 (66)
T ss_dssp CTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------SSB-SSSTTSS
T ss_pred CCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------CCCCCCCCCcC
Confidence 445544 4456789999999998 6899999999996 1 23999999976
No 35
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.06 E-value=3.2e-06 Score=75.86 Aligned_cols=61 Identities=28% Similarity=0.506 Sum_probs=49.5
Q ss_pred eeCCCCCcCCc-----ccCCCCCCccEEEEeec-----------CCceecceecCCcccccee----cccCCCCceEEeE
Q 032894 65 VVCADCDGNGA-----VLCSQCKGSGVNAVDFF-----------GGQFKAGDSCWLCGGKRDM----LCGNCNGAGFVGG 124 (131)
Q Consensus 65 ~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~-----------~G~~~~~~~C~~C~G~G~~----~C~~C~G~G~v~~ 124 (131)
..|+.|+|+|. +.|+.|+|+|....-.+ .+......+|+.|+|+|.+ .|+.|.|+|.+..
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 57999999999 67999999999843211 1223457899999999997 9999999999877
Q ss_pred e
Q 032894 125 F 125 (131)
Q Consensus 125 ~ 125 (131)
|
T Consensus 83 c 83 (715)
T COG1107 83 C 83 (715)
T ss_pred e
Confidence 6
No 36
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.96 E-value=4.4e-06 Score=70.73 Aligned_cols=78 Identities=19% Similarity=0.435 Sum_probs=54.9
Q ss_pred CCCCCCC-ceeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc-----------ccCCCCCCccEEEE
Q 032894 24 DSSSDSK-DHLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA-----------VLCSQCKGSGVNAV 89 (131)
Q Consensus 24 ~~~~~~~-~~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~ 89 (131)
|+++... .|+++|++.+. +..++....+ ..+.|.+..-.....|+.|+|+|. ..|+.|+|+|.+..
T Consensus 113 g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 192 (369)
T PRK14288 113 APDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK 192 (369)
T ss_pred CCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence 4444433 36888888875 4444443322 456666554456788999999996 46999999999865
Q ss_pred eecCCceecceecCCcccccee
Q 032894 90 DFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 90 ~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
. +|..|.|.|.+
T Consensus 193 ~----------~C~~C~G~g~v 204 (369)
T PRK14288 193 T----------PCQACKGKTYI 204 (369)
T ss_pred c----------cCccCCCcceE
Confidence 4 79999998864
No 37
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.1e-06 Score=69.33 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=5.8
Q ss_pred ecCCccccce
Q 032894 101 SCWLCGGKRD 110 (131)
Q Consensus 101 ~C~~C~G~G~ 110 (131)
+|.+|.|+|.
T Consensus 258 ~C~TC~gtgs 267 (406)
T KOG2813|consen 258 PCTTCSGTGS 267 (406)
T ss_pred ccccccCccc
Confidence 5666666554
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2.4e-05 Score=66.86 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=65.3
Q ss_pred cccCCCCCCCc-eeecccCCCC-ccccccceee-eecccCccccc-ceeeCCCCCcCCc-------------ccCCCCCC
Q 032894 21 AHVDSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKR-NSVVCADCDGNGA-------------VLCSQCKG 83 (131)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~-r~~~C~~C~GsG~-------------~~C~~C~G 83 (131)
...|+++.-.. |+++|++.+. +..++..... ..+.|.+.+-. ..+.|++|+|+|. .+|+.|+|
T Consensus 112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G 191 (371)
T COG0484 112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNG 191 (371)
T ss_pred cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence 34566666554 7999999887 5577776665 78888866665 7899999999996 68999999
Q ss_pred ccEEEEeecCCceecceecCCcccccee
Q 032894 84 SGVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 84 sG~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
+|.+... +|+.|.|.|.+
T Consensus 192 ~G~~i~~----------pC~~C~G~G~v 209 (371)
T COG0484 192 TGKIIKD----------PCGKCKGKGRV 209 (371)
T ss_pred ceeECCC----------CCCCCCCCCeE
Confidence 9999755 99999999985
No 39
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.60 E-value=2.3e-05 Score=66.40 Aligned_cols=70 Identities=20% Similarity=0.489 Sum_probs=48.2
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 120 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 196 (371)
T PRK14287 120 LEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ--- 196 (371)
T ss_pred EEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc---
Confidence 5777888765 3344433322 4566664332 34578999999985 469999999998654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|.+.+
T Consensus 197 -------~C~~C~G~g~v 207 (371)
T PRK14287 197 -------KCATCGGKGKV 207 (371)
T ss_pred -------cCCCCCCeeEE
Confidence 79999998865
No 40
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00015 Score=65.48 Aligned_cols=24 Identities=33% Similarity=0.955 Sum_probs=11.0
Q ss_pred eeCCCCCcCCc----ccCCCCCCccEEE
Q 032894 65 VVCADCDGNGA----VLCSQCKGSGVNA 88 (131)
Q Consensus 65 ~~C~~C~GsG~----~~C~~C~GsG~~~ 88 (131)
++|+.|+|+|. ..|+.|.|+|.+.
T Consensus 54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 54 IPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred CCCCeeccceeEEEEeecccCCCceeEE
Confidence 34444444444 3444444444443
No 41
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.03 E-value=0.00046 Score=50.06 Aligned_cols=33 Identities=36% Similarity=0.822 Sum_probs=22.8
Q ss_pred eCCCCCcCCc------------ccCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032894 66 VCADCDGNGA------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 66 ~C~~C~GsG~------------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.|+.|+|+|. ..|+.|+|+|++ .|..|.|+|..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-------------~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-------------TCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-------------eCCCCCCCEEE
Confidence 6777777766 467777777753 47777777764
No 42
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.02 E-value=0.00049 Score=58.83 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=50.4
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecCC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGG 94 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~G 94 (131)
|+++|++.+. +..++....+ ..+.|.+........|+.|+|+|. .+|+.|+|+|.+...
T Consensus 145 vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---- 220 (397)
T PRK14281 145 LTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKD---- 220 (397)
T ss_pred eEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCC----
Confidence 5777888765 3344433222 356666555456788999999995 469999999998654
Q ss_pred ceecceecCCcccccee
Q 032894 95 QFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 95 ~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 221 ------~C~~C~G~g~v 231 (397)
T PRK14281 221 ------RCPACYGEGIK 231 (397)
T ss_pred ------CCCCCCCCccE
Confidence 79999998875
No 43
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.02 E-value=0.00056 Score=58.07 Aligned_cols=78 Identities=21% Similarity=0.418 Sum_probs=52.9
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS 84 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs 84 (131)
|.++..+. |+++|++.+. +..++....+ ..+.|.+.+- .....|+.|+|+|. .+|+.|+|+
T Consensus 122 g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~ 201 (372)
T PRK14296 122 GQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGA 201 (372)
T ss_pred CCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCc
Confidence 33443332 5777888765 3344433332 4566765433 34578999999996 279999999
Q ss_pred cEEEEeecCCceecceecCCcccccee
Q 032894 85 GVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 85 G~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
|.+... +|+.|.|+|.+
T Consensus 202 G~~~~~----------~C~~C~G~g~v 218 (372)
T PRK14296 202 GKIIKN----------KCKNCKGKGKY 218 (372)
T ss_pred ceeecc----------cccCCCCceEE
Confidence 999755 79999998864
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.01 E-value=0.00053 Score=57.92 Aligned_cols=78 Identities=21% Similarity=0.418 Sum_probs=53.0
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCcc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSG 85 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG 85 (131)
++++..+. |+++|++.+. +..++....+ ..+.|.+........|+.|+|+|. .+|+.|+|.|
T Consensus 122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G 201 (365)
T PRK14290 122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRG 201 (365)
T ss_pred CCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCce
Confidence 34444443 6888888775 3333332222 346666554456788999999995 4799999999
Q ss_pred EEEEeecCCceecceecCCcccccee
Q 032894 86 VNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 86 ~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.+... +|+.|.|+|.+
T Consensus 202 ~~~~~----------~C~~C~G~g~v 217 (365)
T PRK14290 202 RIPEE----------KCPRCNGTGTV 217 (365)
T ss_pred eEccC----------CCCCCCCceeE
Confidence 88544 89999999874
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.00 E-value=0.00046 Score=58.69 Aligned_cols=70 Identities=20% Similarity=0.468 Sum_probs=48.7
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+.+. .....|+.|+|+|. .+|+.|+|+|.++..
T Consensus 123 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--- 199 (377)
T PRK14298 123 ITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES--- 199 (377)
T ss_pred EEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC---
Confidence 5778888775 3333433222 4566665433 33478999999985 479999999988644
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|+.|.|+|.+
T Consensus 200 -------~C~~C~G~g~v 210 (377)
T PRK14298 200 -------PCPVCSGTGKV 210 (377)
T ss_pred -------CCCCCCCccEE
Confidence 79999999874
No 46
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.00 E-value=0.00044 Score=59.10 Aligned_cols=70 Identities=26% Similarity=0.486 Sum_probs=47.3
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|+++..
T Consensus 155 ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~------- 227 (392)
T PRK14279 155 LDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIED------- 227 (392)
T ss_pred EEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCC-------
Confidence 5666777664 3333332222 3456664332 34678999999987 479999999998654
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
+|..|.|.|.+
T Consensus 228 ---~C~~C~G~g~v 238 (392)
T PRK14279 228 ---PCEECKGTGVT 238 (392)
T ss_pred ---cCCCCCCCeEE
Confidence 79999998864
No 47
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.93 E-value=0.00071 Score=57.55 Aligned_cols=70 Identities=21% Similarity=0.520 Sum_probs=49.3
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+.+- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 121 vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--- 197 (378)
T PRK14278 121 LDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPD--- 197 (378)
T ss_pred EEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCC---
Confidence 6788888775 3344433222 3566664333 34578999999995 469999999998654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|+.|.|+|.+
T Consensus 198 -------~C~~C~G~g~v 208 (378)
T PRK14278 198 -------PCHECAGDGRV 208 (378)
T ss_pred -------CCCCCCCceeE
Confidence 79999999874
No 48
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.92 E-value=0.00064 Score=57.62 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=51.6
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA 88 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~ 88 (131)
|+++.... |+++|++.+. +..++..... ..+.|.+..- .....|+.|+|+|. .+|+.|+|.|.+.
T Consensus 118 g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (372)
T PRK14300 118 GSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII 197 (372)
T ss_pred CCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence 33333332 5777888765 3344433222 3456665433 34578999999986 4699999999886
Q ss_pred EeecCCceecceecCCcccccee
Q 032894 89 VDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 89 ~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.. +|..|.|+|.+
T Consensus 198 ~~----------~C~~C~G~g~v 210 (372)
T PRK14300 198 KN----------PCKKCHGMGRY 210 (372)
T ss_pred CC----------CCCCCCCceEE
Confidence 54 79999998874
No 49
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.91 E-value=0.00067 Score=57.55 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=51.9
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA 88 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~ 88 (131)
|+++.... |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|++.
T Consensus 123 g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 202 (372)
T PRK14286 123 GSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI 202 (372)
T ss_pred CCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence 33443332 5778888775 3344433322 4556665433 23478999999996 4799999999886
Q ss_pred EeecCCceecceecCCcccccee
Q 032894 89 VDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 89 ~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.. +|..|.|+|.+
T Consensus 203 ~~----------~C~~C~G~g~~ 215 (372)
T PRK14286 203 SN----------PCKTCGGQGLQ 215 (372)
T ss_pred cc----------cCCCCCCCcEE
Confidence 54 79999998875
No 50
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.86 E-value=0.00071 Score=57.44 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=50.7
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA 88 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~ 88 (131)
|+++..+. |+++|++.+. +..++....+ ..+.|.+... .....|+.|+|+|. ..|+.|+|+|.+.
T Consensus 117 g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 117 GSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred CCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence 33443332 5777888765 3333332222 3455654332 34578999999986 5799999999986
Q ss_pred EeecCCceecceecCCcccccee
Q 032894 89 VDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 89 ~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.. +|+.|.|+|.+
T Consensus 197 ~~----------~C~~C~G~g~v 209 (373)
T PRK14301 197 TH----------PCPKCKGSGIV 209 (373)
T ss_pred CC----------CCCCCCCCcee
Confidence 54 79999998864
No 51
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.00087 Score=57.25 Aligned_cols=70 Identities=29% Similarity=0.555 Sum_probs=48.9
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.++..
T Consensus 148 lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~------- 220 (389)
T PRK14295 148 LSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADD------- 220 (389)
T ss_pred EEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEecc-------
Confidence 5777777765 3344433222 4566664433 34578999999986 579999999998654
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 221 ---~C~~C~G~g~~ 231 (389)
T PRK14295 221 ---PCLVCKGSGRA 231 (389)
T ss_pred ---CCCCCCCCceE
Confidence 89999998864
No 52
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.0008 Score=57.13 Aligned_cols=70 Identities=20% Similarity=0.490 Sum_probs=47.8
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 125 vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--- 201 (376)
T PRK14280 125 LTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE--- 201 (376)
T ss_pred EEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC---
Confidence 5777888775 3344433222 3456664333 34578999999985 369999999988654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|+.|.|+|.+
T Consensus 202 -------~C~~C~G~g~v 212 (376)
T PRK14280 202 -------KCPTCHGKGKV 212 (376)
T ss_pred -------CCCCCCCceEE
Confidence 79999998864
No 53
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.81 E-value=0.00092 Score=56.58 Aligned_cols=78 Identities=19% Similarity=0.408 Sum_probs=51.8
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS 84 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs 84 (131)
|+++..+. |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. ..|+.|+|+
T Consensus 125 g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 204 (369)
T PRK14282 125 GEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGT 204 (369)
T ss_pred CCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCc
Confidence 34443332 6778888765 3333333222 4566665433 34578999999996 469999999
Q ss_pred cEEEEeecCCceecceecCCcccccee
Q 032894 85 GVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 85 G~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
|.+... .|..|.|+|.+
T Consensus 205 G~~~~~----------~C~~C~G~g~v 221 (369)
T PRK14282 205 GKIPGE----------YCHECGGSGRI 221 (369)
T ss_pred ceeCCC----------CCCCCCCceeE
Confidence 988644 79999998863
No 54
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.78 E-value=0.0011 Score=57.33 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=55.7
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCcc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSG 85 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG 85 (131)
|.++..+. |+++|++.+. +..++....+ ..+.|.+..-.....|+.|+|+|. .+|+.|+|+|
T Consensus 123 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G 202 (421)
T PTZ00037 123 GEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQG 202 (421)
T ss_pred CCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcc
Confidence 44444443 6888999875 3344433322 567777655556788999999994 3799999999
Q ss_pred EEEEeecCCceecceecCCcccccee
Q 032894 86 VNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 86 ~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.+... ..+|..|.|+|.+
T Consensus 203 ~~i~~--------~~~C~~C~G~g~v 220 (421)
T PTZ00037 203 KIIPE--------SKKCKNCSGKGVK 220 (421)
T ss_pred eeccc--------cccCCcCCCccee
Confidence 98641 2389999999874
No 55
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.001 Score=56.28 Aligned_cols=70 Identities=21% Similarity=0.529 Sum_probs=47.9
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +...+....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 124 vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~------- 196 (371)
T PRK10767 124 ITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKD------- 196 (371)
T ss_pred eehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCC-------
Confidence 5777888765 3333332222 3556664332 34568999999997 359999999998644
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 197 ---~C~~C~G~g~v 207 (371)
T PRK10767 197 ---PCKKCHGQGRV 207 (371)
T ss_pred ---CCCCCCCCceE
Confidence 79999998874
No 56
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.76 E-value=0.001 Score=55.73 Aligned_cols=70 Identities=20% Similarity=0.457 Sum_probs=48.8
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
++++|++.+. +..++....+ ..+.|.+... .....|..|+|+|. .+|+.|+|+|++...
T Consensus 125 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--- 201 (354)
T TIGR02349 125 LTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE--- 201 (354)
T ss_pred EEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC---
Confidence 5888888775 3333332222 4556664333 33688999999985 479999999998644
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
.|..|.|+|.+
T Consensus 202 -------~C~~C~G~g~v 212 (354)
T TIGR02349 202 -------PCSTCKGKGRV 212 (354)
T ss_pred -------CCCCCCCCcEe
Confidence 79999999874
No 57
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.75 E-value=0.00081 Score=56.94 Aligned_cols=70 Identities=20% Similarity=0.462 Sum_probs=47.7
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 128 vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~------- 200 (365)
T PRK14285 128 ISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISN------- 200 (365)
T ss_pred EEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCC-------
Confidence 5777777665 3333332222 3455664332 34578999999985 479999999998654
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 201 ---~C~~C~G~g~v 211 (365)
T PRK14285 201 ---PCKSCKGKGSL 211 (365)
T ss_pred ---CCCCCCCCCEE
Confidence 89999999864
No 58
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.71 E-value=0.0011 Score=56.01 Aligned_cols=78 Identities=21% Similarity=0.481 Sum_probs=50.9
Q ss_pred CCCCCCC-ceeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032894 24 DSSSDSK-DHLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA 88 (131)
Q Consensus 24 ~~~~~~~-~~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~ 88 (131)
|+++... .|+++|++.+. +..++....+ ..+.|.+... .....|+.|+|+|. .+|+.|+|+|++.
T Consensus 117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 196 (366)
T PRK14294 117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI 196 (366)
T ss_pred CCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence 3444333 26788888775 3333332222 3455664332 33578999999996 4799999999886
Q ss_pred EeecCCceecceecCCcccccee
Q 032894 89 VDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 89 ~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.. +|..|.|+|.+
T Consensus 197 ~~----------~C~~C~G~g~v 209 (366)
T PRK14294 197 VS----------PCKTCHGQGRV 209 (366)
T ss_pred Cc----------CCCCCCCceEe
Confidence 44 79999998864
No 59
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.69 E-value=0.0012 Score=56.30 Aligned_cols=70 Identities=24% Similarity=0.547 Sum_probs=47.4
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +...+....+ ..+.|.+... .....|..|+|+|. .+|+.|+|+|.+...
T Consensus 137 vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 213 (386)
T PRK14277 137 LTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITD--- 213 (386)
T ss_pred EEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccC---
Confidence 5677777664 3333332222 3456664433 34578999999986 369999999998654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 214 -------~C~~C~G~g~v 224 (386)
T PRK14277 214 -------PCNKCGGTGRI 224 (386)
T ss_pred -------CCCCCCCCcEE
Confidence 79999998875
No 60
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.69 E-value=0.00087 Score=57.17 Aligned_cols=70 Identities=24% Similarity=0.567 Sum_probs=47.9
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +..++..... ..+.|.+.+. .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 140 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~------- 212 (391)
T PRK14284 140 LSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITD------- 212 (391)
T ss_pred EEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCC-------
Confidence 5667777664 3333332222 4556665443 34578999999997 579999999988654
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
+|+.|.|.|.+
T Consensus 213 ---~C~~C~G~g~v 223 (391)
T PRK14284 213 ---PCSVCRGQGRI 223 (391)
T ss_pred ---cCCCCCCccee
Confidence 79999998864
No 61
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.63 E-value=0.00097 Score=56.69 Aligned_cols=70 Identities=21% Similarity=0.484 Sum_probs=46.3
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 128 vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 204 (380)
T PRK14276 128 LDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKE--- 204 (380)
T ss_pred EEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccC---
Confidence 5777887765 3333433222 3556664433 23568999999886 368999999988654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|.|.+
T Consensus 205 -------~C~~C~G~g~~ 215 (380)
T PRK14276 205 -------PCQTCHGTGHE 215 (380)
T ss_pred -------CCCCCCCceEE
Confidence 78889888864
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0012 Score=56.04 Aligned_cols=70 Identities=21% Similarity=0.490 Sum_probs=47.0
Q ss_pred eeecccCCCC-ccccccceee-eecccCcc-cccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGN-TKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~-~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|++. .-.....|+.|+|+|. ..|+.|+|+|++...
T Consensus 136 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 212 (386)
T PRK14289 136 LNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKK--- 212 (386)
T ss_pred EEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCc---
Confidence 6788888765 3333332222 34556543 3345688999999887 269999999988644
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
.|..|.|+|.+
T Consensus 213 -------~C~~C~G~g~v 223 (386)
T PRK14289 213 -------KCKKCGGEGIV 223 (386)
T ss_pred -------CCCCCCCCcEE
Confidence 79999998864
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.46 E-value=0.0017 Score=55.23 Aligned_cols=70 Identities=23% Similarity=0.472 Sum_probs=47.7
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
|+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|. .+|+.|+|+|.+...
T Consensus 130 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~--- 206 (380)
T PRK14297 130 LTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIED--- 206 (380)
T ss_pred EEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCC---
Confidence 5777888765 3344433322 4566664432 23578999999985 479999999988654
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 207 -------~C~~C~G~g~v 217 (380)
T PRK14297 207 -------PCNKCHGKGKV 217 (380)
T ss_pred -------CCCCCCCCeEE
Confidence 79999998853
No 64
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0024 Score=54.15 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=52.0
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS 84 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs 84 (131)
|+++..+. ++++|+|.+. +..++....+ -.+.|.+.+. .....|+.|+|+|. ..|+.|+|.
T Consensus 116 g~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 195 (374)
T PRK14293 116 GDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGT 195 (374)
T ss_pred CCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcc
Confidence 44444443 6888998875 3344433222 3455654333 34578999999996 369999999
Q ss_pred cEEEEeecCCceecceecCCcccccee
Q 032894 85 GVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 85 G~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
|.++.. +|..|.|+|.+
T Consensus 196 G~~~~~----------~C~~C~G~g~v 212 (374)
T PRK14293 196 GQVIED----------PCDACGGQGVK 212 (374)
T ss_pred eeEecc----------CCCCCCCCccc
Confidence 998654 79999998864
No 65
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0048 Score=51.12 Aligned_cols=51 Identities=25% Similarity=0.502 Sum_probs=42.7
Q ss_pred eeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecccCCC
Q 032894 65 VVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCN 117 (131)
Q Consensus 65 ~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C~~C~ 117 (131)
-.|..|.|.+...|..|+|+=++... ........+|+.|+--|.++|+.|.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~~~--~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVHEE--EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeeeee--ccCCCcEEECcccCCCCceeCCccC
Confidence 68999999999999999999998763 1222345699999999999999995
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.27 E-value=0.0031 Score=53.27 Aligned_cols=78 Identities=17% Similarity=0.441 Sum_probs=50.3
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc--cceeeCCCCCcCCc---------------ccCCCCCC
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK--RNSVVCADCDGNGA---------------VLCSQCKG 83 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~--~r~~~C~~C~GsG~---------------~~C~~C~G 83 (131)
|.++..+. |+++|++.+. +..++....+ -.++|.+... .....|..|+|+|. ..|+.|+|
T Consensus 112 g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 191 (371)
T PRK14292 112 GDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRG 191 (371)
T ss_pred CCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcc
Confidence 33443332 5788888765 3233332222 3455665433 23688999999986 36999999
Q ss_pred ccEEEEeecCCceecceecCCcccccee
Q 032894 84 SGVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 84 sG~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
.|+.... +|..|.|+|.+
T Consensus 192 ~G~~~~~----------~C~~C~G~g~v 209 (371)
T PRK14292 192 EGQIITD----------PCTVCRGRGRT 209 (371)
T ss_pred cceecCC----------CCCCCCCceEE
Confidence 9988643 89999998864
No 67
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.0032 Score=53.42 Aligned_cols=70 Identities=19% Similarity=0.452 Sum_probs=46.9
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG 93 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~ 93 (131)
++++|++.+. +..++..... ..+.|.+... .....|+.|+|+|. .+|+.|+|+|.....
T Consensus 128 vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--- 204 (378)
T PRK14283 128 ITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEK--- 204 (378)
T ss_pred eeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCC---
Confidence 5888888775 3333322211 3455654332 34578999999987 359999999988644
Q ss_pred CceecceecCCcccccee
Q 032894 94 GQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 94 G~~~~~~~C~~C~G~G~~ 111 (131)
+|..|.|+|.+
T Consensus 205 -------~C~~C~G~g~v 215 (378)
T PRK14283 205 -------PCSNCHGKGVV 215 (378)
T ss_pred -------CCCCCCCceee
Confidence 79999998864
No 68
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.0045 Score=52.68 Aligned_cols=69 Identities=23% Similarity=0.483 Sum_probs=48.0
Q ss_pred eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
|+++|++.+. +..++....+ ..+.|.+.+. .....|+.|+|+|. .+|+.|+|+|.+ .
T Consensus 138 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-~-------- 208 (382)
T PRK14291 138 ISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-R-------- 208 (382)
T ss_pred EEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE-c--------
Confidence 5788888775 3344433332 4566665433 34678999999996 579999999953 2
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
..|..|.|.|.+
T Consensus 209 --~~C~~C~G~g~v 220 (382)
T PRK14291 209 --EPCSKCNGRGLV 220 (382)
T ss_pred --cCCCCCCCCceE
Confidence 279999998864
No 69
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0019 Score=53.41 Aligned_cols=68 Identities=29% Similarity=0.512 Sum_probs=53.3
Q ss_pred ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF 121 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~ 121 (131)
|..|. .+.+.....|.+|.|.|. ..|..|.|.|.+....... +... +|..|.|++.+ .|..|.|.|.
T Consensus 151 A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~-~~~~c~~~~~~~~~~c~~~~g~~~ 228 (288)
T KOG0715|consen 151 AVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDP-FILY-TCSYCLGRGLVLRDNCQACSGAGQ 228 (288)
T ss_pred HhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCC-ccee-ecccccccceeccchHHHhhcchh
Confidence 44444 688888899999999998 7899999999765532222 2222 99999999998 6999999996
Q ss_pred E
Q 032894 122 V 122 (131)
Q Consensus 122 v 122 (131)
+
T Consensus 229 v 229 (288)
T KOG0715|consen 229 V 229 (288)
T ss_pred h
Confidence 6
No 70
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.73 E-value=0.0065 Score=47.67 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=5.9
Q ss_pred ccCCCCCCccEEE
Q 032894 76 VLCSQCKGSGVNA 88 (131)
Q Consensus 76 ~~C~~C~GsG~~~ 88 (131)
..|+.|+|+|.+.
T Consensus 100 ~~C~~C~G~G~~i 112 (186)
T TIGR02642 100 CKCPRCRGTGLIQ 112 (186)
T ss_pred CcCCCCCCeeEEe
Confidence 3444444444443
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.65 E-value=0.0069 Score=47.53 Aligned_cols=31 Identities=35% Similarity=0.697 Sum_probs=26.0
Q ss_pred ccccceeeCCCCCcCCc-----ccCCCCCCccEEEE
Q 032894 59 NTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAV 89 (131)
Q Consensus 59 ~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~ 89 (131)
..+-+...|+.|+|+|. ..|+.|+|+|++..
T Consensus 94 ~dy~~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 94 NEVLNSCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred HHHHcCCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 34556899999999998 25999999999876
No 72
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.67 E-value=0.041 Score=41.41 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=33.1
Q ss_pred eeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecc
Q 032894 64 SVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLC 113 (131)
Q Consensus 64 ~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C 113 (131)
...|..|.|.+...|..|+|+=++...... ......+|+.|+--|.++|
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~-~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKVFAENAT-AAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceEEeccCc-ccccEEECCCCCccccccC
Confidence 456999999999999999999998764110 0112346666666555544
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.21 Score=42.50 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=55.4
Q ss_pred CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc----------------ccCCCCCCc
Q 032894 24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA----------------VLCSQCKGS 84 (131)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~----------------~~C~~C~Gs 84 (131)
|+++.... ++++|+|-+. +.-.+..-.+ ..+.|.+..-.....|..|.|+|. ..|..|+|+
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~ 179 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGS 179 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCc
Confidence 67777665 7888999873 2222222222 566666555555568999999998 678899998
Q ss_pred cEEEEeecCCceecceecCCcccccee
Q 032894 85 GVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 85 G~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
|.... ....|+.|.|++.+
T Consensus 180 G~~~~--------~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 180 GETIS--------LKDRCKTCSGAKVV 198 (337)
T ss_pred ccccc--------ccccCcccccchhh
Confidence 88732 23489999998875
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.71 E-value=0.31 Score=36.63 Aligned_cols=34 Identities=32% Similarity=0.816 Sum_probs=26.7
Q ss_pred ccCCCCCCccEEEEeecCCceecceecCCcccccee------------cccCCCCceEE
Q 032894 76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM------------LCGNCNGAGFV 122 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~------------~C~~C~G~G~v 122 (131)
..|..|.|.+.+ +|..|+|+-++ +|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rfv-------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV-------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE-------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 569999998887 78888886442 89999888865
No 75
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.88 Score=37.94 Aligned_cols=35 Identities=31% Similarity=0.742 Sum_probs=25.9
Q ss_pred ccCCCCCCccEEEEeecCCceecceecCCcccccee-----------cccCCCCceEEe
Q 032894 76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM-----------LCGNCNGAGFVG 123 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~-----------~C~~C~G~G~v~ 123 (131)
..|..|.|.+.+ +|..|+|+-++ +|..|+-.|.+.
T Consensus 230 ~~C~~CGg~rFl-------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL-------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE-------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 468888887777 67888776553 788888888764
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.48 E-value=0.86 Score=43.42 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred cCCCCCCccEEEEeecCCceecceecCCccccce
Q 032894 77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD 110 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~ 110 (131)
.|+.|+|.|++.....+- .-...+|+.|+|++.
T Consensus 738 ~C~~C~G~G~~~~~~~f~-~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFL-PDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCC-CCcccCCCCcCCcee
Confidence 488888888887752221 113557777777655
No 77
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=78.21 E-value=1.1 Score=36.47 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=19.9
Q ss_pred eeeCCCCCcCCcccCCCCCCccEEEE
Q 032894 64 SVVCADCDGNGAVLCSQCKGSGVNAV 89 (131)
Q Consensus 64 ~~~C~~C~GsG~~~C~~C~GsG~~~~ 89 (131)
...+..-.|.+..+||+|+|+|++-.
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCc
Confidence 34555667777799999999999855
No 78
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=75.83 E-value=2 Score=41.08 Aligned_cols=33 Identities=30% Similarity=0.586 Sum_probs=19.8
Q ss_pred cCCCCCCccEEEEeecCCceecceecCCccccce
Q 032894 77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD 110 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~ 110 (131)
.|+.|+|.|.+.....+-. -...+|+.|+|+..
T Consensus 740 ~C~~C~G~G~~~~~~~f~~-~~~~~C~~C~G~R~ 772 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLP-DVYVPCDVCKGKRY 772 (943)
T ss_pred CCCcccccceEEEEeccCC-CccccCccccCccc
Confidence 4888888888877522110 12356777766654
No 79
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.70 E-value=1 Score=37.24 Aligned_cols=70 Identities=21% Similarity=0.486 Sum_probs=46.7
Q ss_pred eeecccCCCC-ccccccceee-eecccCc-ccccceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032894 32 HLINDTPKTT-KVNRLHSIRV-KAAANNG-NTKRNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~-~~~~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
+.+.++-++. +...|..++. .++.+.+ ........|..|.|+|. .+|..|+|.|.+...
T Consensus 146 ~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~------- 218 (288)
T KOG0715|consen 146 LDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD------- 218 (288)
T ss_pred cCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccc-------
Confidence 4555555555 3444444443 3444443 44567789999999993 459999999999765
Q ss_pred cceecCCcccccee
Q 032894 98 AGDSCWLCGGKRDM 111 (131)
Q Consensus 98 ~~~~C~~C~G~G~~ 111 (131)
.|..|.|.|.+
T Consensus 219 ---~c~~~~g~~~v 229 (288)
T KOG0715|consen 219 ---NCQACSGAGQV 229 (288)
T ss_pred ---hHHHhhcchhh
Confidence 48888888753
No 80
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=73.59 E-value=2.4 Score=43.18 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=20.7
Q ss_pred cCCCCCCccEEEEeecCCce-ecceecCCccccce
Q 032894 77 LCSQCKGSGVNAVDFFGGQF-KAGDSCWLCGGKRD 110 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~G~~-~~~~~C~~C~G~G~ 110 (131)
.|+.|+|.|.+.... .++ -...+|+.|+|+.+
T Consensus 1609 rC~~C~G~G~i~i~m--~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR--AFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEec--ccCCCcccCCCCCCCcCC
Confidence 478888888877642 111 24567888887765
No 81
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.80 E-value=2.2 Score=40.66 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=25.2
Q ss_pred cccccc-eeeCCCCCcCCc------------ccCCCCCCccEEEE
Q 032894 58 GNTKRN-SVVCADCDGNGA------------VLCSQCKGSGVNAV 89 (131)
Q Consensus 58 ~~~~~r-~~~C~~C~GsG~------------~~C~~C~GsG~~~~ 89 (131)
.++++. .-.|+.|+|.|. .+|+.|+|+.....
T Consensus 729 ~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 729 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred hcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 355554 366999999998 68999999987644
No 82
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=66.50 E-value=2.8 Score=34.21 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=15.1
Q ss_pred ceecCCccccceecccCCCCceEE
Q 032894 99 GDSCWLCGGKRDMLCGNCNGAGFV 122 (131)
Q Consensus 99 ~~~C~~C~G~G~~~C~~C~G~G~v 122 (131)
+.++-+-.|++.+.|++|+|.|++
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRI 50 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccC
Confidence 445555666666667777776665
No 83
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=60.39 E-value=8.3 Score=36.93 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=18.1
Q ss_pred ccCCCCCCccEEEEeecCCceecceecCCccccce
Q 032894 76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD 110 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~ 110 (131)
-+|..|+|.|.+.....+- -....+|+.|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM~FL-pdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFL-PDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEeccC-CCceeeCCCcCCccc
Confidence 3566677777776642110 012356777766644
No 84
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.41 E-value=4.6 Score=38.67 Aligned_cols=31 Identities=32% Similarity=0.641 Sum_probs=24.4
Q ss_pred ccccc-eeeCCCCCcCCc------------ccCCCCCCccEEEE
Q 032894 59 NTKRN-SVVCADCDGNGA------------VLCSQCKGSGVNAV 89 (131)
Q Consensus 59 ~~~~r-~~~C~~C~GsG~------------~~C~~C~GsG~~~~ 89 (131)
++++. .-.|+.|+|.|. ..|+.|+|+.....
T Consensus 732 FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 732 FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCCCCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 44443 457999999998 68999999987654
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.11 E-value=16 Score=32.41 Aligned_cols=51 Identities=22% Similarity=0.634 Sum_probs=34.6
Q ss_pred cceeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCCCCceE
Q 032894 62 RNSVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNCNGAGF 121 (131)
Q Consensus 62 ~r~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G~ 121 (131)
...+.|..| |. ..|+.|.+.=..... .....|..|+-+-.. .|+.|.+...
T Consensus 211 a~~~~C~~C---g~~~~C~~C~~~l~~h~~------~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 211 SKNLLCRSC---GYILCCPNCDVSLTYHKK------EGKLRCHYCGYQEPIPKTCPQCGSEDL 264 (505)
T ss_pred CCeeEhhhC---cCccCCCCCCCceEEecC------CCeEEcCCCcCcCCCCCCCCCCCCCee
Confidence 345688888 44 789999875333321 234589999766554 8999977643
No 86
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=57.38 E-value=5.7 Score=40.68 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=24.9
Q ss_pred cccc-ceeeCCCCCcCCc------------ccCCCCCCccEEEE
Q 032894 59 NTKR-NSVVCADCDGNGA------------VLCSQCKGSGVNAV 89 (131)
Q Consensus 59 ~~~~-r~~~C~~C~GsG~------------~~C~~C~GsG~~~~ 89 (131)
++++ ..=.|+.|+|.|. .+|+.|+|+.....
T Consensus 1601 FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1601 FSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred ccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 5555 3567999999998 79999999987643
No 87
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.27 E-value=19 Score=33.84 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=35.7
Q ss_pred ccceeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCCCCc
Q 032894 61 KRNSVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNCNGA 119 (131)
Q Consensus 61 ~~r~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~ 119 (131)
+...+.|.+| |+ ..|+.|...=..... ..+..|..|+-...+ .|+.|.+.
T Consensus 432 ys~~l~C~~C---g~v~~Cp~Cd~~lt~H~~------~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 432 YAPLLLCRDC---GYIAECPNCDSPLTLHKA------TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ccceeecccC---CCcccCCCCCcceEEecC------CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 3456889998 55 689999986333322 245699999776555 99999877
No 88
>PRK04023 DNA polymerase II large subunit; Validated
Probab=57.25 E-value=13 Score=36.34 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=38.6
Q ss_pred eeecc-cCccccc-ceeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCccccce-ecccCCCC
Q 032894 51 VKAAA-NNGNTKR-NSVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD-MLCGNCNG 118 (131)
Q Consensus 51 vka~~-g~~~~~~-r~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~-~~C~~C~G 118 (131)
.||++ ...+.++ ....|+.|.-.+. ..|+.|...-.. ...|+.|.-... ..|+.|.-
T Consensus 611 ~~A~~~~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~Te~-----------i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 611 NKAAKYKGTIEVEIGRRKCPSCGKETFYRRCPFCGTHTEP-----------VYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred HHHHhcCCceeecccCccCCCCCCcCCcccCCCCCCCCCc-----------ceeCccccCcCCCCcCCCCCC
Confidence 47887 4555554 4588999977766 789999887211 237888855443 37888854
No 89
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=54.65 E-value=17 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=10.5
Q ss_pred ccCCCCCCccEEEE
Q 032894 76 VLCSQCKGSGVNAV 89 (131)
Q Consensus 76 ~~C~~C~GsG~~~~ 89 (131)
+.||.|.|......
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 46999999888443
No 90
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=52.23 E-value=7.3 Score=37.28 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=25.9
Q ss_pred cccccce-eeCCCCCcCCc------------ccCCCCCCccEEEE
Q 032894 58 GNTKRNS-VVCADCDGNGA------------VLCSQCKGSGVNAV 89 (131)
Q Consensus 58 ~~~~~r~-~~C~~C~GsG~------------~~C~~C~GsG~~~~ 89 (131)
.++++.+ =.|+.|.|.|. ++|+.|+|+-....
T Consensus 723 rFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 723 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred cccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 3556555 78999999998 89999999987644
No 91
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=47.36 E-value=14 Score=21.27 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.4
Q ss_pred cCCCCCCccEE
Q 032894 77 LCSQCKGSGVN 87 (131)
Q Consensus 77 ~C~~C~GsG~~ 87 (131)
+||.|+-.-.+
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 45555554443
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.72 E-value=25 Score=32.26 Aligned_cols=50 Identities=24% Similarity=0.645 Sum_probs=33.2
Q ss_pred ceeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCCCCce
Q 032894 63 NSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNCNGAG 120 (131)
Q Consensus 63 r~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G 120 (131)
..+.|..|.-. ..|+.|.+. ..... ......|..|+-+-.. .|+.|.+.-
T Consensus 380 ~~~~C~~Cg~~--~~C~~C~~~-l~~h~-----~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 380 PFLLCRDCGWV--AECPHCDAS-LTLHR-----FQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred CceEhhhCcCc--cCCCCCCCc-eeEEC-----CCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 36788888331 689999983 32221 1234589999766554 899997764
No 93
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=42.41 E-value=27 Score=21.59 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=10.3
Q ss_pred ccCCCCCCccEEEEe
Q 032894 76 VLCSQCKGSGVNAVD 90 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~ 90 (131)
+.||.| |...+...
T Consensus 4 kPCPFC-G~~~~~~~ 17 (61)
T PF14354_consen 4 KPCPFC-GSADVLIR 17 (61)
T ss_pred cCCCCC-CCcceEee
Confidence 578999 77777664
No 94
>PF14353 CpXC: CpXC protein
Probab=41.74 E-value=28 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=22.5
Q ss_pred ccCCCCCCccEEEEee-cCC------------ceecceecCCcccccee
Q 032894 76 VLCSQCKGSGVNAVDF-FGG------------QFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~-~~G------------~~~~~~~C~~C~G~G~~ 111 (131)
.+||.|+-.......+ .+. ......+||.|+....+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 4689999888876621 111 12245788888766654
No 95
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.60 E-value=23 Score=19.91 Aligned_cols=8 Identities=50% Similarity=1.115 Sum_probs=4.4
Q ss_pred cCCCCCCc
Q 032894 77 LCSQCKGS 84 (131)
Q Consensus 77 ~C~~C~Gs 84 (131)
.|+.|+-.
T Consensus 4 ~CP~C~~~ 11 (38)
T TIGR02098 4 QCPNCKTS 11 (38)
T ss_pred ECCCCCCE
Confidence 45666554
No 96
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.05 E-value=31 Score=31.90 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=33.2
Q ss_pred ceeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCcccccee-cccCCCCceE
Q 032894 63 NSVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM-LCGNCNGAGF 121 (131)
Q Consensus 63 r~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G~G~ 121 (131)
....|.+| |. ..|+.|.+.=..+.. .....|..|+-.-.- .|+.|.+.-.
T Consensus 382 p~l~C~~C---g~~~~C~~C~~~L~~h~~------~~~l~Ch~CG~~~~p~~Cp~Cgs~~l 433 (665)
T PRK14873 382 PSLACARC---RTPARCRHCTGPLGLPSA------GGTPRCRWCGRAAPDWRCPRCGSDRL 433 (665)
T ss_pred CeeEhhhC---cCeeECCCCCCceeEecC------CCeeECCCCcCCCcCccCCCCcCCcc
Confidence 45788888 55 789999985444321 134589999654321 8999977643
No 97
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=40.75 E-value=12 Score=26.09 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=18.9
Q ss_pred ccCCCCCCccEEEEee----cCCceecceecCCcccccee
Q 032894 76 VLCSQCKGSGVNAVDF----FGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~----~~G~~~~~~~C~~C~G~G~~ 111 (131)
..|..|+|.|...... .+| +..--.|.+|.|+|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G-~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFG-VPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccC-CchhhhhhhhcCCCCC
Confidence 4577778877554421 112 2223467777776653
No 98
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=38.47 E-value=36 Score=22.15 Aligned_cols=6 Identities=50% Similarity=1.564 Sum_probs=3.2
Q ss_pred ccCCCC
Q 032894 76 VLCSQC 81 (131)
Q Consensus 76 ~~C~~C 81 (131)
-.||.|
T Consensus 26 F~CPnC 31 (59)
T PRK14890 26 FLCPNC 31 (59)
T ss_pred eeCCCC
Confidence 345555
No 99
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=37.54 E-value=22 Score=21.18 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.9
Q ss_pred cCCCCCCccEEE
Q 032894 77 LCSQCKGSGVNA 88 (131)
Q Consensus 77 ~C~~C~GsG~~~ 88 (131)
.||.|.|+.+..
T Consensus 5 pCP~CGG~DrFr 16 (40)
T PF08273_consen 5 PCPICGGKDRFR 16 (40)
T ss_dssp --TTTT-TTTEE
T ss_pred CCCCCcCccccc
Confidence 567777766655
No 100
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=37.40 E-value=28 Score=19.96 Aligned_cols=28 Identities=29% Similarity=0.574 Sum_probs=12.1
Q ss_pred cCCCCCCccEEEEeecCCceecceecCCcc
Q 032894 77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~ 106 (131)
-|+.|.+. +......|--.....|+.|+
T Consensus 2 fC~~CG~~--l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGP--LERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B---EEE--TT-SS-EEEETTTT
T ss_pred ccccccCh--hhhhcCCCCCccceECCCCC
Confidence 47778776 33333345455666777774
No 101
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=34.87 E-value=30 Score=19.67 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=8.2
Q ss_pred ccCCCCCCccEEE
Q 032894 76 VLCSQCKGSGVNA 88 (131)
Q Consensus 76 ~~C~~C~GsG~~~ 88 (131)
..|..|++.|.+.
T Consensus 4 ~~C~~C~~~~i~~ 16 (33)
T PF08792_consen 4 KKCSKCGGNGIVN 16 (33)
T ss_pred eEcCCCCCCeEEE
Confidence 3566677777663
No 102
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=31.72 E-value=25 Score=25.43 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=21.2
Q ss_pred eeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCcc-ccceecccCCC-CceEEeEe
Q 032894 64 SVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG-GKRDMLCGNCN-GAGFVGGF 125 (131)
Q Consensus 64 ~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~-G~G~~~C~~C~-G~G~v~~~ 125 (131)
-..|+.|+| +|+-|..-=+- ......|..|. |+...+|-.|. +.|....|
T Consensus 20 G~lC~kCdG----kCpiCDS~Vrp--------~~~VrICdeCs~G~~~~rCIiCg~~~g~sdAY 71 (106)
T PF03660_consen 20 GRLCEKCDG----KCPICDSYVRP--------CTKVRICDECSFGSLQGRCIICGSGPGVSDAY 71 (106)
T ss_dssp -EE-GGGTT------TTT---------------EE-EEEHHHHTSSTTSB-TTTSSSB--EE-E
T ss_pred hhhhhhcCC----cccccCCccCC--------cceEEECCcCCCCCcCceEEEecCCCCcccce
Confidence 367888888 57888732111 11223566665 44444777777 66665444
No 103
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=31.46 E-value=46 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=21.1
Q ss_pred cCCCCCCccEEEEe-e---cCCc-eecceecCCcccc
Q 032894 77 LCSQCKGSGVNAVD-F---FGGQ-FKAGDSCWLCGGK 108 (131)
Q Consensus 77 ~C~~C~GsG~~~~~-~---~~G~-~~~~~~C~~C~G~ 108 (131)
.|+.|+..|..... + .++. +.+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 58999888876552 1 1232 4568899999644
No 104
>PRK05978 hypothetical protein; Provisional
Probab=31.09 E-value=24 Score=26.72 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=6.5
Q ss_pred ceecceecCCcc
Q 032894 95 QFKAGDSCWLCG 106 (131)
Q Consensus 95 ~~~~~~~C~~C~ 106 (131)
.......|+.|+
T Consensus 48 ~Lkv~~~C~~CG 59 (148)
T PRK05978 48 FLKPVDHCAACG 59 (148)
T ss_pred ccccCCCccccC
Confidence 344555666663
No 105
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.23 E-value=49 Score=33.22 Aligned_cols=44 Identities=20% Similarity=0.479 Sum_probs=30.7
Q ss_pred eeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCcccc------ceecccCCCC
Q 032894 64 SVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGK------RDMLCGNCNG 118 (131)
Q Consensus 64 ~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~------G~~~C~~C~G 118 (131)
...|+.|..... ..|+.|...=.. ...|+.|+.. +...|+.|..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~-----------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP-----------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC-----------ceeCccCCCccCCCccccccCCCCCC
Confidence 689999987654 689999877321 2378888763 1237988863
No 106
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=29.61 E-value=30 Score=22.90 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=4.9
Q ss_pred cccCCCCceEE
Q 032894 112 LCGNCNGAGFV 122 (131)
Q Consensus 112 ~C~~C~G~G~v 122 (131)
+|+.|+..=.+
T Consensus 31 ~C~gC~~~HlI 41 (66)
T PF05180_consen 31 QCPGCKNRHLI 41 (66)
T ss_dssp E-TTS--EEES
T ss_pred ECCCCcceeee
Confidence 67777655444
No 107
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.76 E-value=31 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=31.4
Q ss_pred eeCCCCCcCCcccCCCCCCccEEEEeecCCc-eecceecCCccccce------ecccCCC
Q 032894 65 VVCADCDGNGAVLCSQCKGSGVNAVDFFGGQ-FKAGDSCWLCGGKRD------MLCGNCN 117 (131)
Q Consensus 65 ~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~-~~~~~~C~~C~G~G~------~~C~~C~ 117 (131)
..|+.|.+.| ..|..|+....+. -+ ......|+.|..-=. ..|+.|.
T Consensus 143 ~~C~lC~~kG-fiCe~C~~~~~If-----PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 143 YSCELCQQKG-FICEICNSDDIIF-----PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHhHHHHhCC-CCCccCCCCCCCC-----CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 4899999998 6899998875442 12 135678888865322 2677664
No 108
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=27.58 E-value=42 Score=16.42 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=4.9
Q ss_pred ecCCcccccee
Q 032894 101 SCWLCGGKRDM 111 (131)
Q Consensus 101 ~C~~C~G~G~~ 111 (131)
.|..|+..|.+
T Consensus 2 ~C~~C~~~GH~ 12 (18)
T PF00098_consen 2 KCFNCGEPGHI 12 (18)
T ss_dssp BCTTTSCSSSC
T ss_pred cCcCCCCcCcc
Confidence 34444444443
No 109
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=27.40 E-value=79 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=21.7
Q ss_pred cCCCCCCccEEEEe-ec----CCc-eecceecCCcccc
Q 032894 77 LCSQCKGSGVNAVD-FF----GGQ-FKAGDSCWLCGGK 108 (131)
Q Consensus 77 ~C~~C~GsG~~~~~-~~----~G~-~~~~~~C~~C~G~ 108 (131)
.|+.|++.|..... +. ++. +.+...|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 58999988887662 22 232 4568899999544
No 110
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=25.04 E-value=46 Score=30.77 Aligned_cols=41 Identities=27% Similarity=0.765 Sum_probs=27.1
Q ss_pred eeCCCCCcC---CcccCCCCCCccEEEEeecCCceecceecCCcccc---ceecccCCC
Q 032894 65 VVCADCDGN---GAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGK---RDMLCGNCN 117 (131)
Q Consensus 65 ~~C~~C~Gs---G~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~---G~~~C~~C~ 117 (131)
+.|+.|.-. |.+.|+.|..+-. ...|+.|+-. +...|+.|.
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~------------~~~Cp~CG~~~~~~~~fC~~CG 48 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT------------HKPCPQCGTEVPVDEAHCPNCG 48 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC------------CCcCCCCCCCCCcccccccccC
Confidence 578888654 4478999944321 1279999654 334999994
No 111
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=24.92 E-value=49 Score=28.29 Aligned_cols=28 Identities=36% Similarity=0.872 Sum_probs=21.8
Q ss_pred ccccceeeCCCCCcCCcccCCCCCCccEEEE
Q 032894 59 NTKRNSVVCADCDGNGAVLCSQCKGSGVNAV 89 (131)
Q Consensus 59 ~~~~r~~~C~~C~GsG~~~C~~C~GsG~~~~ 89 (131)
-++.-.+.|..|.|.| |+.|++.|.+..
T Consensus 255 PS~Evdv~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 255 PSAEVDVSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred CceEEEEEEeccCCCc---ccccCCCCceEE
Confidence 3445567788899866 999999998765
No 112
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=24.23 E-value=1.2e+02 Score=17.63 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=17.3
Q ss_pred cCCCCCCccEEEEeecC----CceecceecCCcc
Q 032894 77 LCSQCKGSGVNAVDFFG----GQFKAGDSCWLCG 106 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~----G~~~~~~~C~~C~ 106 (131)
.|+.|+....+..+.+. ..+..-..|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 58889877777654322 2334445666663
No 113
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=23.53 E-value=1.1e+02 Score=23.20 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=18.4
Q ss_pred cCCCCCCccEEEEe--e--cCCc-eecceecCCcccc
Q 032894 77 LCSQCKGSGVNAVD--F--FGGQ-FKAGDSCWLCGGK 108 (131)
Q Consensus 77 ~C~~C~GsG~~~~~--~--~~G~-~~~~~~C~~C~G~ 108 (131)
.|+.|+..|..... . .++. +.+...|+.|+=+
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 39 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYK 39 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--E
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCE
Confidence 58999999977552 1 1232 4567899999543
No 114
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=23.19 E-value=79 Score=18.35 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=5.9
Q ss_pred cCCCCCCcc
Q 032894 77 LCSQCKGSG 85 (131)
Q Consensus 77 ~C~~C~GsG 85 (131)
.||.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 467777655
No 115
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.42 E-value=66 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=18.4
Q ss_pred ccccceeeCCCCCcCCc-----ccCCCCCCccEEE
Q 032894 59 NTKRNSVVCADCDGNGA-----VLCSQCKGSGVNA 88 (131)
Q Consensus 59 ~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~ 88 (131)
..++-...|.+|.-.-. ..||.|++.....
T Consensus 65 ~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PRK12380 65 VYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLRV 99 (113)
T ss_pred EeeCcEEEcccCCCEEecCCcCccCcCCCCCCcEE
Confidence 34466778888864433 3477777665444
No 116
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=21.59 E-value=35 Score=22.12 Aligned_cols=10 Identities=30% Similarity=1.082 Sum_probs=4.0
Q ss_pred eeeCCCCCcC
Q 032894 64 SVVCADCDGN 73 (131)
Q Consensus 64 ~~~C~~C~Gs 73 (131)
.+.|.+|+.+
T Consensus 30 ~IlCNDC~~~ 39 (61)
T PF14599_consen 30 WILCNDCNAK 39 (61)
T ss_dssp EEEESSS--E
T ss_pred EEECCCCCCc
Confidence 3555555443
No 117
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=21.54 E-value=1.3e+02 Score=17.38 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=15.6
Q ss_pred cCCCCCCccEEEEeecC----CceecceecCCcc
Q 032894 77 LCSQCKGSGVNAVDFFG----GQFKAGDSCWLCG 106 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~----G~~~~~~~C~~C~ 106 (131)
.|+.|+.......+.+. ..+..-..|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 58888888877664322 2344445666663
No 118
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=21.12 E-value=71 Score=18.68 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=6.5
Q ss_pred cCCCCCCccEEE
Q 032894 77 LCSQCKGSGVNA 88 (131)
Q Consensus 77 ~C~~C~GsG~~~ 88 (131)
.||.|.|+....
T Consensus 5 pCP~CGG~DrFr 16 (37)
T smart00778 5 PCPNCGGSDRFR 16 (37)
T ss_pred CCCCCCCccccc
Confidence 456666655443
No 119
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=20.80 E-value=65 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=17.7
Q ss_pred ccccceeeCCCCCcCCc-----ccCCCCCCccEEEE
Q 032894 59 NTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAV 89 (131)
Q Consensus 59 ~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~ 89 (131)
...+-...|.+|.-... ..||.|++......
T Consensus 65 e~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (113)
T PF01155_consen 65 EEVPARARCRDCGHEFEPDEFDFSCPRCGSPDVEII 100 (113)
T ss_dssp EEE--EEEETTTS-EEECHHCCHH-SSSSSS-EEEE
T ss_pred EecCCcEECCCCCCEEecCCCCCCCcCCcCCCcEEc
Confidence 34466788888876655 56888888865443
No 120
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=20.74 E-value=33 Score=32.99 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=0.0
Q ss_pred eeecccC--ccccc-ceeeCCCCCcCCc-ccCCCCCCccEEEEeecCCceecceecCCcccccee-cccCCCCc
Q 032894 51 VKAAANN--GNTKR-NSVVCADCDGNGA-VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM-LCGNCNGA 119 (131)
Q Consensus 51 vka~~g~--~~~~~-r~~~C~~C~GsG~-~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G~ 119 (131)
.+|++.. ++.+. -...|+.|.-... ..|+.|...=... ..|+.|.-.-.. .|+.|.-.
T Consensus 639 ~~A~~~~~g~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~-----------~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 639 QKAAKKGKGTIEVEIGRRRCPKCGKETFYNRCPECGSHTEPV-----------YVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHhcCCCeeEEeeecccCcccCCcchhhcCcccCCccccc-----------eeccccccccCcccccccccc
Confidence 4666544 35543 4578999977666 7899997654433 268888654433 78888543
No 121
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=20.50 E-value=48 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=22.1
Q ss_pred cccccce-eeCCCCCcCCc--ccCCCCCCccEEEE
Q 032894 58 GNTKRNS-VVCADCDGNGA--VLCSQCKGSGVNAV 89 (131)
Q Consensus 58 ~~~~~r~-~~C~~C~GsG~--~~C~~C~GsG~~~~ 89 (131)
+++.++. ++|..|++.-+ ..||.|...|..+.
T Consensus 155 tLsk~~hcilCtvCe~r~w~g~~CPKCGr~G~pi~ 189 (200)
T PF12387_consen 155 TLSKSKHCILCTVCEGREWKGGNCPKCGRHGKPIT 189 (200)
T ss_pred hccCCCceEEEeeeecCccCCCCCCcccCCCCCee
Confidence 3444433 78888888776 67888888887653
No 122
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.39 E-value=1.2e+02 Score=17.67 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=4.9
Q ss_pred ceecCCccc
Q 032894 99 GDSCWLCGG 107 (131)
Q Consensus 99 ~~~C~~C~G 107 (131)
...||.|++
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 445666654
Done!