Query 032894
Match_columns 131
No_of_seqs 174 out of 1049
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.6 4.1E-15 1.4E-19 103.8 9.1 83 25-123 2-94 (104)
2 1exk_A DNAJ protein; extended 99.4 1.7E-13 5.7E-18 90.7 5.9 64 58-123 5-77 (79)
3 1nlt_A Protein YDJ1, mitochond 99.3 2.2E-12 7.5E-17 102.3 3.7 66 58-123 32-109 (248)
4 1exk_A DNAJ protein; extended 98.2 8.3E-07 2.8E-11 58.1 4.0 57 45-111 7-76 (79)
5 2ctt_A DNAJ homolog subfamily 97.9 1.1E-05 3.9E-10 55.6 3.9 50 52-111 32-93 (104)
6 3lcz_A YCZA, inhibitor of trap 97.4 6.2E-05 2.1E-09 46.9 2.1 26 97-122 7-35 (53)
7 1nlt_A Protein YDJ1, mitochond 97.3 7.6E-05 2.6E-09 58.8 2.0 81 23-111 10-108 (248)
8 3lcz_A YCZA, inhibitor of trap 97.0 0.00041 1.4E-08 43.1 3.0 28 63-90 8-38 (53)
9 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00042 1.4E-08 43.1 2.9 27 63-89 8-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.7 0.00087 3E-08 41.6 2.4 24 99-122 9-35 (53)
11 3pmq_A Decaheme cytochrome C M 90.3 0.0093 3.2E-07 53.4 -4.8 68 53-120 178-281 (669)
12 3nyb_B Protein AIR2; polya RNA 48.6 15 0.00051 24.0 3.0 52 63-116 4-65 (83)
13 3pmq_A Decaheme cytochrome C M 28.1 35 0.0012 30.4 2.9 89 31-120 172-305 (669)
14 2jne_A Hypothetical protein YF 26.7 47 0.0016 22.8 2.7 44 65-119 33-90 (101)
15 1pft_A TFIIB, PFTFIIBN; N-term 24.5 33 0.0011 19.6 1.5 7 77-83 7-13 (50)
16 3j20_Y 30S ribosomal protein S 24.1 43 0.0015 19.7 1.9 24 76-105 20-43 (50)
17 2jrp_A Putative cytoplasmic pr 23.0 99 0.0034 20.2 3.7 19 65-83 3-26 (81)
18 2lli_A Protein AIR2; RNA surve 21.7 36 0.0012 23.0 1.4 48 66-115 24-82 (124)
19 2vf7_A UVRA2, excinuclease ABC 20.8 50 0.0017 30.0 2.5 33 77-110 640-672 (842)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=103.84 Aligned_cols=83 Identities=31% Similarity=0.636 Sum_probs=68.4
Q ss_pred CCCCCC-ceeecccCCCCccccccceeeeecccCcccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCcee
Q 032894 25 SSSDSK-DHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFK 97 (131)
Q Consensus 25 ~~~~~~-~~~~~~~~~~~~~~~f~~~~vka~~g~~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~ 97 (131)
+++..+ .|+++|++.+... .+++++.+.|+.|+|+|. .+|+.|+|+|++... .|+|+
T Consensus 2 ~~~~~~l~vslee~~~G~~~--------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~--~G~~~ 65 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNK--------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN--TGPFV 65 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCT--------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEE--ETTEE
T ss_pred CceEEEEEEEHHHHcCCCEE--------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEE--eCCEE
Confidence 444444 3788888876532 256899999999999996 689999999998765 38888
Q ss_pred cceecCCcccccee---cccCCCCceEEe
Q 032894 98 AGDSCWLCGGKRDM---LCGNCNGAGFVG 123 (131)
Q Consensus 98 ~~~~C~~C~G~G~~---~C~~C~G~G~v~ 123 (131)
.+.+|+.|.|+|++ +|+.|+|.|++.
T Consensus 66 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 66 MRSTCRRCGGRGSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp EEEECSSSSSSSEECSSCCSSSSSCSEEC
T ss_pred EEEECCcCCCcceECCCcCCCCCCeeEEE
Confidence 89999999999998 999999999873
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.43 E-value=1.7e-13 Score=90.73 Aligned_cols=64 Identities=31% Similarity=0.673 Sum_probs=57.7
Q ss_pred cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceEEe
Q 032894 58 GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFVG 123 (131)
Q Consensus 58 ~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v~ 123 (131)
.+.+++.+.|+.|+|+|. .+|+.|+|+|+++... |+|+.+.+|+.|.|+|++ +|+.|+|.|++.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE 77 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence 577899999999999996 5899999999987643 888888999999999998 999999999874
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.26 E-value=2.2e-12 Score=102.33 Aligned_cols=66 Identities=27% Similarity=0.687 Sum_probs=56.6
Q ss_pred cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc--eecceecCCcccccee-----cccCCCCceEEe
Q 032894 58 GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM-----LCGNCNGAGFVG 123 (131)
Q Consensus 58 ~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~-----~C~~C~G~G~v~ 123 (131)
.+++++.+.|+.|+|+|+ .+|+.|+|+|++...+..|+ ++.+.+|+.|+|+|++ +|+.|+|.|++.
T Consensus 32 ~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 32 KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence 366889999999999997 78999999999887655665 3578999999999964 899999999873
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.25 E-value=8.3e-07 Score=58.13 Aligned_cols=57 Identities=26% Similarity=0.686 Sum_probs=42.1
Q ss_pred cccceee-eecccCccc-ccceeeCCCCCcCCcc-----------cCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032894 45 RLHSIRV-KAAANNGNT-KRNSVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 45 ~f~~~~v-ka~~g~~~~-~~r~~~C~~C~GsG~~-----------~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
+|..... ..+.|.+.. ......|+.|+|+|.+ +|+.|+|+|.++. .+|+.|.|.|.+
T Consensus 7 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~G~~ 76 (79)
T 1exk_A 7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK----------DPCNKCHGHGRV 76 (79)
T ss_dssp CCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS----------SBCGGGTTSSEE
T ss_pred EcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC----------CcCCCCCCeEEE
Confidence 3444443 566666533 3445799999999972 7999999999853 389999999975
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=1.1e-05 Score=55.59 Aligned_cols=50 Identities=26% Similarity=0.671 Sum_probs=38.0
Q ss_pred eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032894 52 KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 52 ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
..+.|.+.+. .....|+.|+|+|. .+|+.|+|+|.++. .+|+.|.|.|.+
T Consensus 32 ~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~----------~~C~~C~G~G~v 93 (104)
T 2ctt_A 32 ERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII----------SPCVVCRGAGQA 93 (104)
T ss_dssp SSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS----------SCCSSSSSCSEE
T ss_pred CCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC----------CcCCCCCCeeEE
Confidence 4555554332 34578999999995 47999999998864 389999999976
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.41 E-value=6.2e-05 Score=46.93 Aligned_cols=26 Identities=27% Similarity=0.663 Sum_probs=20.0
Q ss_pred ecceecCCcccccee---cccCCCCceEE
Q 032894 97 KAGDSCWLCGGKRDM---LCGNCNGAGFV 122 (131)
Q Consensus 97 ~~~~~C~~C~G~G~~---~C~~C~G~G~v 122 (131)
+.+.+|+.|.|+|++ +|+.|+|+|++
T Consensus 7 q~~~~C~~C~GsG~~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEPEPCPKCLGKGVI 35 (53)
T ss_dssp HHEEECTTTTTSCEETTEECTTTTTSSEE
T ss_pred ceeccCcCCcccccCCCCcCCCCCCcEEE
Confidence 356788888888885 78888888876
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.31 E-value=7.6e-05 Score=58.82 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=58.5
Q ss_pred cCCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCc
Q 032894 23 VDSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGS 84 (131)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~Gs 84 (131)
.|.++..+. |+++|+|.+. +..++..... ..+.|.+.+-.....|+.|+|+|. .+|+.|+|+
T Consensus 10 ~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~ 89 (248)
T 1nlt_A 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT 89 (248)
T ss_dssp BCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSS
T ss_pred CCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCc
Confidence 455555554 7999999886 5566665444 566777554444589999999995 479999999
Q ss_pred cEEEEeecCCceecceecCCcccccee
Q 032894 85 GVNAVDFFGGQFKAGDSCWLCGGKRDM 111 (131)
Q Consensus 85 G~~~~~~~~G~~~~~~~C~~C~G~G~~ 111 (131)
|.+.. ...+|+.|.|.|.+
T Consensus 90 G~~i~--------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 90 GDIID--------PKDRCKSCNGKKVE 108 (248)
T ss_dssp SSCCC--------TTSBCSSSTTSCEE
T ss_pred CEEec--------cCCCCcccCCCceE
Confidence 98762 13489999999874
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.04 E-value=0.00041 Score=43.14 Aligned_cols=28 Identities=32% Similarity=0.826 Sum_probs=23.4
Q ss_pred ceeeCCCCCcCCc---ccCCCCCCccEEEEe
Q 032894 63 NSVVCADCDGNGA---VLCSQCKGSGVNAVD 90 (131)
Q Consensus 63 r~~~C~~C~GsG~---~~C~~C~GsG~~~~~ 90 (131)
...+|++|+|+|. ..|+.|+|+|.+...
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 4678999999998 789999999988653
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.03 E-value=0.00042 Score=43.07 Aligned_cols=27 Identities=33% Similarity=0.817 Sum_probs=21.6
Q ss_pred ceeeCCCCCcCCc---ccCCCCCCccEEEE
Q 032894 63 NSVVCADCDGNGA---VLCSQCKGSGVNAV 89 (131)
Q Consensus 63 r~~~C~~C~GsG~---~~C~~C~GsG~~~~ 89 (131)
....|+.|+|+|. .+|+.|+|+|++..
T Consensus 8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 8 LEVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp HEEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred ccccCCCCcceeccCCCCCccCCCCccEEE
Confidence 3568888888887 67888888888765
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.69 E-value=0.00087 Score=41.63 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=14.5
Q ss_pred ceecCCcccccee---cccCCCCceEE
Q 032894 99 GDSCWLCGGKRDM---LCGNCNGAGFV 122 (131)
Q Consensus 99 ~~~C~~C~G~G~~---~C~~C~G~G~v 122 (131)
+.+|+.|+|+|.+ +|+.|+|.|++
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v 35 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVI 35 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEE
T ss_pred cccCCCCcceeccCCCCCccCCCCccE
Confidence 3456666666654 66666666665
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=90.29 E-value=0.0093 Score=53.35 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=47.6
Q ss_pred ecccC--cccccceeeCCCCCcCCc---------ccCCCCCCccEEEEe----------ecCCce-ecceecCCccccce
Q 032894 53 AAANN--GNTKRNSVVCADCDGNGA---------VLCSQCKGSGVNAVD----------FFGGQF-KAGDSCWLCGGKRD 110 (131)
Q Consensus 53 a~~g~--~~~~~r~~~C~~C~GsG~---------~~C~~C~GsG~~~~~----------~~~G~~-~~~~~C~~C~G~G~ 110 (131)
|+.|. ++++.+...|..|+|+|. +.|+.|+|+...... ...|.| +....|..|...+.
T Consensus 178 A~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 178 SGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp SSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred hhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 45555 689999999999999975 679999999422111 012332 45678999998775
Q ss_pred --------------ecccCCCCce
Q 032894 111 --------------MLCGNCNGAG 120 (131)
Q Consensus 111 --------------~~C~~C~G~G 120 (131)
..|..|+...
T Consensus 258 ~la~~~~w~~~ps~~aC~sCH~~~ 281 (669)
T 3pmq_A 258 DLADRQNWYRVPTMEACGACHTQI 281 (669)
T ss_dssp TCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred ccccccccccCCchhhhhhccCCc
Confidence 1788888643
No 12
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=48.63 E-value=15 Score=24.03 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=27.0
Q ss_pred ceeeCCCCCcCCc--------ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCC
Q 032894 63 NSVVCADCDGNGA--------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNC 116 (131)
Q Consensus 63 r~~~C~~C~GsG~--------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C 116 (131)
+.+.|..|...|- .+|-.|...|.+...... ......|-.|...|.+ .|+.=
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~--p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL--PFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC---------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccC--CCCCCeecccCCCCcCcccCCcc
Confidence 4577888888887 245667777665432100 1134689999999887 77763
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=28.14 E-value=35 Score=30.44 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=53.5
Q ss_pred ceeecccCCCC-ccccccceee-eecccCccc----ccceeeCCCCCcCC------------------------cccCCC
Q 032894 31 DHLINDTPKTT-KVNRLHSIRV-KAAANNGNT----KRNSVVCADCDGNG------------------------AVLCSQ 80 (131)
Q Consensus 31 ~~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~----~~r~~~C~~C~GsG------------------------~~~C~~ 80 (131)
.|.++|+..+. +.+++.+.+. ..+.|.+.. +.....|+.|+|+. ...|..
T Consensus 172 ~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~ 251 (669)
T 3pmq_A 172 HYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQT 251 (669)
T ss_dssp EEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTT
T ss_pred EEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchh
Confidence 46888887665 4455554443 455455322 23568999999993 147999
Q ss_pred CCCccEEEEeecCCc--eecceecCCccccc-----e--------ecccCCCCce
Q 032894 81 CKGSGVNAVDFFGGQ--FKAGDSCWLCGGKR-----D--------MLCGNCNGAG 120 (131)
Q Consensus 81 C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G-----~--------~~C~~C~G~G 120 (131)
|+..+..... ...| ......|..|.... + ..|..|++.+
T Consensus 252 CH~~~~~la~-~~~w~~~ps~~aC~sCH~~~~f~~g~~H~~~~~~~~C~~CH~~~ 305 (669)
T 3pmq_A 252 CHADNPDLAD-RQNWYRVPTMEACGACHTQINFPAGQGHPAQTDNSNCVACHNAD 305 (669)
T ss_dssp TSCCCTTCCS-CSCTTTCCCHHHHHHHCCSCBTTTTBSSCCCSSSSSHHHHSCHH
T ss_pred hcCCcccccc-ccccccCCchhhhhhccCCcccccccCCcccCCCCChhhcCCCC
Confidence 9998761110 0112 23467888888543 1 1688888643
No 14
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.74 E-value=47 Score=22.81 Aligned_cols=44 Identities=20% Similarity=0.538 Sum_probs=25.3
Q ss_pred eeCCCCCcC-----CcccCCCCCCccEEEEeecCCceecceecCCcccccee---------cccCCCCc
Q 032894 65 VVCADCDGN-----GAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---------LCGNCNGA 119 (131)
Q Consensus 65 ~~C~~C~Gs-----G~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---------~C~~C~G~ 119 (131)
..|+.|+-. |...|..|+.. +.....||.|+-.=+. .|..|+|-
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~-----------f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF-----------IEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE-----------EEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred ccCccCCCcceecCCEEECccccch-----------hhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 577777643 22447777662 2334578888654332 66777653
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=24.52 E-value=33 Score=19.64 Aligned_cols=7 Identities=29% Similarity=1.265 Sum_probs=3.9
Q ss_pred cCCCCCC
Q 032894 77 LCSQCKG 83 (131)
Q Consensus 77 ~C~~C~G 83 (131)
.||.|++
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4566654
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.05 E-value=43 Score=19.74 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=11.2
Q ss_pred ccCCCCCCccEEEEeecCCceecceecCCc
Q 032894 76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLC 105 (131)
Q Consensus 76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C 105 (131)
..||.| |+|..+..+ .....|+.|
T Consensus 20 k~CP~C-G~~~fm~~~-----~~R~~C~kC 43 (50)
T 3j20_Y 20 KFCPRC-GPGVFMADH-----GDRWACGKC 43 (50)
T ss_dssp EECSSS-CSSCEEEEC-----SSEEECSSS
T ss_pred ccCCCC-CCceEEecC-----CCeEECCCC
Confidence 345666 345554432 123456665
No 17
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.96 E-value=99 Score=20.23 Aligned_cols=19 Identities=21% Similarity=0.751 Sum_probs=10.6
Q ss_pred eeCCCCCcC-----CcccCCCCCC
Q 032894 65 VVCADCDGN-----GAVLCSQCKG 83 (131)
Q Consensus 65 ~~C~~C~Gs-----G~~~C~~C~G 83 (131)
..|+.|+.. +...|..|+.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC
T ss_pred CCCCCCCCccccCCCceECccccc
Confidence 456666632 2245777765
No 18
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=21.67 E-value=36 Score=23.03 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=24.2
Q ss_pred eCCCCCcC-Cc--------ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccC
Q 032894 66 VCADCDGN-GA--------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGN 115 (131)
Q Consensus 66 ~C~~C~Gs-G~--------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~ 115 (131)
.|..|... |- ..|..|...|-+...-... .....|..|...|.+ .|+.
T Consensus 24 ~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~--~~~~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHK--WKKVQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCC--CCCCSSSSSCSSCCCTTTCCC
T ss_pred cCcCCCCcCCccCcccCCcccccccCCCCCccccCcCc--ccCccCCCCCcCCcchhhCCC
Confidence 56666554 32 3466666655543210000 012467777777766 5553
No 19
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=20.79 E-value=50 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=19.8
Q ss_pred cCCCCCCccEEEEeecCCceecceecCCccccce
Q 032894 77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD 110 (131)
Q Consensus 77 ~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~ 110 (131)
.|+.|+|.|.+.....+- -....+|+.|.|+.+
T Consensus 640 ~c~~c~g~G~~~~~~~f~-~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFL-PSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCSS-SCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhcC-CccceecccccCccc
Confidence 478888888876542111 112457777777654
Done!