Citrus Sinensis ID: 032896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEccccccccEEcccccccccccEEccccEEccccEEcccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEcccccccEEEEEcccccccccccEEEEEEEcccccccccccEEEccccccccEEccccccccccccccccccEcccccEEEcccccEEEccccccccEEccccccccc
Coil and Loop (DISEMBL)
masascsaamlpfaetlkprahvdsssdskdhlindtpkttkvnrLHSIRVKAAanngntkrnsvvcadcdgngavlcsqckgsgvnavdffggqfkagdscwlcggkrdmlcgncngagfvggfmstqde
Flexible Loop (DISEMBL)
MASASCSAAMLPFAETLKPRAHVdsssdskdhlindtpkttkvnrlhsirvkaaanngntkrnsVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGgfmstqde
Low Complexity Region (SEG)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE
Disordered region (IsUnstruct)
************************************************IRV*********KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGF******
Disordered Region (DISOPRED)
*****CS**********************************************************VCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMST***
Disordered Region (DISEMBL)
********AMLPFAETLK*************HLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE
Disordered Region (DISPRO)
*****CSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
359476132	139	PREDICTED: uncharacterized protein LOC10	0.885	0.834	0.613	2e-34
449437394	132	PREDICTED: uncharacterized protein LOC10	1.0	0.992	0.583	3e-34
296082027	117	unnamed protein product [Vitis vinifera]	0.885	0.991	0.613	5e-34
224141891	132	predicted protein [Populus trichocarpa]	0.977	0.969	0.587	3e-33
13430174	131	putative chaperon P13.9 [Castanea sativa	1.0	1.0	0.534	3e-32
255548936	131	conserved hypothetical protein [Ricinus	0.977	0.977	0.569	9e-32
388502670	131	unknown [Lotus japonicus]	0.923	0.923	0.545	2e-30
351727561	132	uncharacterized protein LOC100306315 [Gl	0.885	0.878	0.575	3e-30
356517012	133	PREDICTED: uncharacterized protein LOC10	0.748	0.736	0.632	7e-30
449443083	137	PREDICTED: uncharacterized protein LOC10	0.862	0.824	0.612	4e-29

>gi|359476132|ref|XP_003631795.1| PREDICTED: uncharacterized protein LOC100854903 [Vitis vinifera]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 90/132 (68%), Gaps = 16/132 (12%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN- 59
           MASA+C  ++ PF+  LKP                  P   K         KAA +N   
Sbjct: 23  MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 67

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGA 119
           TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKAG+SCWLCGGK+D+LCGNCNGA
Sbjct: 68  TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKAGESCWLCGGKKDILCGNCNGA 127

Query: 120 GFVGGFMSTQDE 131
           GFVGGFMST DE
Sbjct: 128 GFVGGFMSTFDE 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437394|ref|XP_004136477.1| PREDICTED: uncharacterized protein LOC101218754 [Cucumis sativus] gi|449517804|ref|XP_004165934.1| PREDICTED: uncharacterized LOC101218754 [Cucumis sativus]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 96/132 (72%), Gaps = 1/132 (0%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLI-NDTPKTTKVNRLHSIRVKAAANNGN 59
           MAS+S S +   F+ T    A +   S+ K +LI N     +   R   + +KAA N+ N
Sbjct: 1   MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGA 119
           TK NSV+C DCDGNGAV+CSQCKG GVNAVDFF GQFKAG+SCWLCGG+++MLCGNCNGA
Sbjct: 61  TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKAGESCWLCGGRKEMLCGNCNGA 120

Query: 120 GFVGGFMSTQDE 131
           GF+GGF+ST D+
Sbjct: 121 GFIGGFLSTYDQ 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082027|emb|CBI21032.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 91/132 (68%), Gaps = 16/132 (12%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA-ANNGN 59
           MASA+C  ++ PF+  LKP                  P   K         KAA +N+  
Sbjct: 1   MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 45

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGA 119
           TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKAG+SCWLCGGK+D+LCGNCNGA
Sbjct: 46  TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKAGESCWLCGGKKDILCGNCNGA 105

Query: 120 GFVGGFMSTQDE 131
           GFVGGFMST DE
Sbjct: 106 GFVGGFMSTFDE 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141891|ref|XP_002324294.1| predicted protein [Populus trichocarpa] gi|118487830|gb|ABK95738.1| unknown [Populus trichocarpa] gi|222865728|gb|EEF02859.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 94/131 (71%), Gaps = 3/131 (2%)

Query: 4   ASCSAAMLPF-AETLKPRAHVDSSSDSKDHL--INDTPKTTKVNRLHSIRVKAAANNGNT 60
           ASCS  +LP  A+      H  +S   +  +  ++D    +   R   +RVKAA  N NT
Sbjct: 2   ASCSPFVLPIRAKQQDSGIHGTNSGMQEIKILGVHDFFHNSSTARRCCVRVKAAPGNRNT 61

Query: 61  KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAG 120
           K NS++CADCDGNGAVLCSQCKGSGVN+ D F G+FKAGDSCWLCGG+++MLCGNCNGAG
Sbjct: 62  KPNSMICADCDGNGAVLCSQCKGSGVNSADLFNGRFKAGDSCWLCGGRKEMLCGNCNGAG 121

Query: 121 FVGGFMSTQDE 131
           F+GGFMST DE
Sbjct: 122 FIGGFMSTFDE 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13430174|gb|AAK25754.1|AF334834_1 putative chaperon P13.9 [Castanea sativa]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 90/131 (68%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNT 60
           MA++ C  ++  F    KP   +  S   K   +N+  + ++  +  S+ VKA  +N  T
Sbjct: 1   MANSLCFTSVCSFKSPNKPGIVIGKSVTRKVLRVNELFQKSETAKFQSLEVKATESNKGT 60

Query: 61  KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAG 120
           K NS+VCADCDGNGA LC+QC+GSGVN VD F GQFKAG  CWLC GKR++LCG+CNGAG
Sbjct: 61  KPNSIVCADCDGNGAKLCTQCEGSGVNTVDHFNGQFKAGGLCWLCRGKREILCGSCNGAG 120

Query: 121 FVGGFMSTQDE 131
           F+GGFMST DE
Sbjct: 121 FLGGFMSTFDE 131

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548936|ref|XP_002515524.1| conserved hypothetical protein [Ricinus communis] gi|223545468|gb|EEF46973.1| conserved hypothetical protein [Ricinus communis]

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 90/130 (69%), Gaps = 2/130 (1%)

Query: 4   ASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKT--TKVNRLHSIRVKAAANNGNTK 61
           A+C +  LP         +  SS   +   I+D  ++  T   R   ++ +AA ++ N K
Sbjct: 2   ATCLSLQLPIRAMEDSGFNGGSSRKQETLGIHDLFQSSFTGTARRCYLKTRAAPSDQNPK 61

Query: 62  RNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGF 121
             SV+C DCDGNGAVLCSQCKGSGVN+VD F GQFKAGDSCWLCGGK+DMLCGNCNGAGF
Sbjct: 62  PKSVICTDCDGNGAVLCSQCKGSGVNSVDIFNGQFKAGDSCWLCGGKKDMLCGNCNGAGF 121

Query: 122 VGGFMSTQDE 131
           +GGFMST DE
Sbjct: 122 LGGFMSTFDE 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502670|gb|AFK39401.1| unknown [Lotus japonicus]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 88/132 (66%), Gaps = 11/132 (8%)

Query: 10  MLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHS---------IRVKAA-ANNGN 59
           M+P +  L PR+        +           +VNRL           +  KAA  N  N
Sbjct: 1   MVP-SLCLTPRSSPTLGHPQQLETHKKQKHCIRVNRLFQGPPTDKFSFLTAKAANGNQQN 59

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGA 119
           TK NSV+CADCDGNGAV+CSQCKG+GVN+VD F GQFKAGDSCWLCGG+++MLCGNCNGA
Sbjct: 60  TKPNSVICADCDGNGAVVCSQCKGNGVNSVDIFNGQFKAGDSCWLCGGRKEMLCGNCNGA 119

Query: 120 GFVGGFMSTQDE 131
           GF+GGF+ST D+
Sbjct: 120 GFIGGFLSTYDQ 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727561|ref|NP_001236909.1| uncharacterized protein LOC100306315 [Glycine max] gi|255628181|gb|ACU14435.1| unknown [Glycine max]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 84/120 (70%), Gaps = 4/120 (3%)

Query: 16  TLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA----ANNGNTKRNSVVCADCD 71
           T  P    +S ++ K   +N   +     +   +  KAA    + N NTK NSV+CAD D
Sbjct: 13  TPAPGIGKESHTNPKHFGVNYAFQVPIATKYRYVITKAAKDNQSTNRNTKPNSVICADSD 72

Query: 72  GNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE 131
           GNGAVLCSQCKGSGVN+VD F GQFKAGDSCWLCGG+++MLCGNCN AGFVGGF+ST D+
Sbjct: 73  GNGAVLCSQCKGSGVNSVDIFNGQFKAGDSCWLCGGRKEMLCGNCNVAGFVGGFLSTYDQ 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517012|ref|XP_003527184.1| PREDICTED: uncharacterized protein LOC100808293 [Glycine max]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 79/98 (80%)

Query: 34  INDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFG 93
           IN+    +K     S++VKAA +N +TK  S+VC+DC+GNGA+LC+QCKG+GVN+VD F 
Sbjct: 36  INEACHDSKARNFQSLKVKAADDNPSTKTKSIVCSDCEGNGAILCTQCKGTGVNSVDHFN 95

Query: 94  GQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE 131
           GQFKAG  CWLC GKRD+LCG+CNGAGF+GGFMST D+
Sbjct: 96  GQFKAGGLCWLCRGKRDILCGSCNGAGFIGGFMSTFDD 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443083|ref|XP_004139310.1| PREDICTED: uncharacterized protein LOC101221053 [Cucumis sativus] gi|449520705|ref|XP_004167374.1| PREDICTED: uncharacterized LOC101221053 [Cucumis sativus]

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 79/116 (68%), Gaps = 3/116 (2%)

Query: 18  KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKA---AANNGNTKRNSVVCADCDGNG 74
           KP   V +S   K   IN+  + T   RL S  VKA   A +   TK  S+VC DCDGNG
Sbjct: 21  KPGVLVGNSVPQKAFRINEAFQKTNSIRLLSFEVKASDGADSKQTTKYKSIVCTDCDGNG 80

Query: 75  AVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQD 130
           AV CSQCKG+GVN+VD F GQFKAG  CWLC GKRD+LCG CNGAGFVGGFMST D
Sbjct: 81  AVQCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGGCNGAGFVGGFMSTAD 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.854	0.823	0.556	5.4e-31
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.488	0.415	0.353	6.1e-07
UNIPROTKB|F1PZB5	380	C3orf32 "Uncharacterized prote	0.648	0.223	0.333	2.3e-06
TAIR|locus:2175966	154	AT5G17840 [Arabidopsis thalian	0.435	0.370	0.362	4.3e-06
RGD|1597772	193	LOC685110 "hypothetical protei	0.496	0.336	0.358	4.1e-05
UNIPROTKB|F1M4R9	188	F1M4R9 "Uncharacterized protei	0.557	0.388	0.328	6.5e-05
TAIR|locus:2827810	301	CSP3 "cold shock domain protei	0.587	0.255	0.353	7.2e-05
DICTYBASE|DDB_G0280953	99	DDB_G0280953 "hssA/2C/7E famil	0.404	0.535	0.396	0.00027
UNIPROTKB|Q9Y2M2	353	SSUH2 "Protein SSUH2 homolog"	0.412	0.152	0.385	0.00033
TAIR|locus:2009482	110	AT1G22630 [Arabidopsis thalian	0.549	0.654	0.320	0.00045

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 64/115 (55%), Positives = 82/115 (71%)

Query:    18 KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN-TKRNSVVCADCDGNGAV 76
             KP +H  S++D+   L+    +  + +R  S  VKAA NN   TK NS+VCA+C+G G V
Sbjct:    24 KP-SHFFSTNDNTSSLVQKR-ELLQTSRSQSFEVKAANNNPQGTKPNSLVCANCEGEGCV 81

Query:    77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQDE 131
              CSQCKG GVN +D F GQFKAG  CWLC GK+++LCG+CNGAGF+GGF+ST DE
Sbjct:    82 ACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFDE 136

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query:    56 NNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGN 115
             +N   + N+  C  C+G GA  C  C GSG   V+  GG+ K   +C  C G   + C  
Sbjct:    76 DNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGE-KEVSNCINCDGAGSLTCTT 134

Query:   116 CNGAG 120
             C G+G
Sbjct:   135 CQGSG 139

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|F1PZB5 C3orf32 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 32/96 (33%), Positives = 43/96 (44%)

Query:    36 DTPKTTKVNRLHSIRVKAAAN-NGNTKR-----NSVV--CADCDGNGAVLCSQCKGSG-V 86
             D P+     RL  IRV+     + +T++     +SVV  C  C G G   CS C G+G V
Sbjct:   143 DGPQRGTSPRLWDIRVQVPPMFHEDTRKFQVPHSSVVKECHKCHGRGRYKCSGCHGAGMV 202

Query:    87 NAVDFFGGQFKAGDS--CWLCGGKRDMLCGNCNGAG 120
                   G + KA  S  C +C G     C  C+G G
Sbjct:   203 RCSSCSGAKRKAKQSRRCQMCSGSGRRRCSTCSGRG 238

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query:    67 CADCDGNGAVLCSQCKGSGVNAVDFFGGQ-FKAGDSCWLCGGKRDMLCGNCNGAGFVG 123
             C  C+  GA+LCS C G+G+        Q       C  CGG  +++C  C G G VG
Sbjct:    96 CTCCEAKGALLCSTCSGTGLYVDSIMESQGIIVKVRCLGCGGSGNIMCKLCGGRGHVG 153

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|1597772 LOC685110 "hypothetical protein LOC685110" [Rattus norvegicus (taxid:10116)]

 Score = 99 (39.9 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 24/67 (35%), Positives = 28/67 (41%)

Query:    58 GNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCN 117
             G +K     C  C G G   C  CKG   +     GG    G  C  CGG +   CG+C 
Sbjct:    65 GGSKGGCGSCGGCKG-GCGSCGGCKGGCGSCGGCKGGCGSCGGCCGSCGGCKGG-CGSCG 122

Query:   118 GAGFVGG 124
             G G  GG
Sbjct:   123 GCGSCGG 129

GO:0045095 "keratin filament" evidence=IEA

UNIPROTKB|F1M4R9 F1M4R9 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 97 (39.2 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 25/76 (32%), Positives = 33/76 (43%)

Query:    49 IRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGK 108
             + V + ++ G  K     C  C G G   C  CKG   +     GG    G  C  CGG+
Sbjct:    34 VPVCSCSSCGGCKGGCGSCGGCKG-GCGSCGGCKGGCGSCGGCKGGCGSCG-GCGSCGGR 91

Query:   109 RDMLCGNCNGAGFVGG 124
             +   CG+C G G  GG
Sbjct:    92 KGG-CGSCGGCGSCGG 106

GO:0045095 "keratin filament" evidence=IEA

TAIR|locus:2827810 CSP3 "cold shock domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 29/82 (35%), Positives = 35/82 (42%)

Query:    50 RVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKG-SGVNAVDFFGGQFKAGDSCWLCGGK 108
             R     N+G        C  C G    L   C+G SG N     GG+   GD C++CGG 
Sbjct:   146 RQSGGGNSGGGGGGGRPCYSC-GEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGV 204

Query:   109 RDMLCGNC--NGAGFVGGFMST 128
                   +C  NG G VGG  ST
Sbjct:   205 GHF-ARDCRQNGGGNVGGGGST 225

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0032508 "DNA duplex unwinding" evidence=IDA

DICTYBASE|DDB_G0280953 DDB_G0280953 "hssA/2C/7E family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 25/63 (39%), Positives = 31/63 (49%)

Query:    63 NSVVCADCDGNGAVLCSQCKGSGVN-AVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGF 121
             NS+ C  C G+G +L S   G G+   +D  GG    G     CGG R    GN NG G 
Sbjct:    33 NSIACGGCGGSGGILGSGL-GLGLGLGLDLTGGSRSRG----ACGGNR----GNGNGNGG 83

Query:   122 VGG 124
             +GG
Sbjct:    84 MGG 86

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y2M2 SSUH2 "Protein SSUH2 homolog" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00033, P = 0.00033
 Identities = 22/57 (38%), Positives = 25/57 (43%)

Query:    67 CADCDGNGAVLCSQCKGSG-VNAVDFFGGQFKAGDS--CWLCGGKRDMLCGNCNGAG 120
             C  C G G   CS C G+G V      G + KA  S  C LC G     C  C+G G
Sbjct:   155 CHKCHGRGRYKCSGCHGAGTVRCPSCCGAKRKAKQSRRCQLCAGSGRRRCSTCSGRG 211

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 25/78 (32%), Positives = 34/78 (43%)

Query:    45 RLHSIRVKAAANNGNTKRNSVV--CADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSC 102
             R  +I+V +A   GN    S+   C  C   GA+ C  CKG+G N  +  G  F+    C
Sbjct:    28 RRDTIKV-SAGKIGNFSLGSIFKSCETCGAKGAIECPGCKGTGKNKKN--GNMFERW-KC 83

Query:   103 WLCGGKRDMLCGNCNGAG 120
             + C G     C  C   G
Sbjct:    84 FDCQGFGMKSCPKCGKGG 101

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-06
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-06
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-04
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	4e-04
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	5e-04
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	5e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	8e-04
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	0.001
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	0.001
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	0.001
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	0.002

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 57  NGNTK----RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106
            G  K      SV C+ C G+GA        C  C GSG        G F    +C  C 
Sbjct: 131 FGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN 190

Query: 107 GKRDML---CGNCNGAGFV 122
           G   ++   CG C G G V
Sbjct: 191 GTGKIIKDPCGKCKGKGRV 209

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 65  VVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDML---C 113
             C  C G GA        C  C G+G          G F+   +C  CGG+  ++   C
Sbjct: 144 ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPC 203

Query: 114 GNCNGAGFV 122
             C G G V
Sbjct: 204 STCKGKGRV 212

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 42  KVNRLHSIRVKAAAN-----NGNTKR----NSVVCADCDGNGA------VLCSQCKGSGV 86
           +V R   +RVK   N      G  K+      V C+ C G GA        C  CKGSG 
Sbjct: 123 RVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGS 182

Query: 87  ---NAVDFFGGQFKAGDSCWLCGGKRDML---CGNCNGAGFVGG 124
                     G  +   +C  C G+  ++   C  C G G V G
Sbjct: 183 VTRVQNTIL-GTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYG 225

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 65  VVCADCDGNG------AVLCSQCKGSG-VNAVDFFGGQFKAGDSCWLCGGK---RDMLCG 114
           V C  C G G        +C  C GSG +     F   F+   +C  CGG+   R+  C 
Sbjct: 157 VPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF---FRISQTCPTCGGEGVLREP-CS 212

Query: 115 NCNGAGFV 122
            CNG G V
Sbjct: 213 KCNGRGLV 220

Length = 382

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 56  NNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGN 115
           +N   + N+  C  C G GA +C  C GSG   V+  GG+ K    C  C G   + C  
Sbjct: 33  DNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGE-KEVSKCINCDGAGSLTCTT 91

Query: 116 CNGAG 120
           C G+G
Sbjct: 92  CQGSG 96

Length = 111

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 67  CADCDGNGA------VLCSQCKGSG--VNAVDFFGGQFKAGDSCWLCGGK---RDMLCGN 115
           C  C G GA        C QC GSG  V      GG F+   +C  CGG        C  
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 116 CNGAG 120
           C G G
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 57  NGNTKR----NSVVCADCDGNGA-----VLCSQCKGSGVNA-VDFFGGQFKAGDS-CWLC 105
           NG  ++      V+CA+C+G+G      V C  C G G+   +   G       S C  C
Sbjct: 139 NGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSC 198

Query: 106 GGKRDML-----CGNCNGAGFV 122
            G+  ++     C NC+G G  
Sbjct: 199 NGQGKIIPESKKCKNCSGKGVK 220

Length = 421

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 62  RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDML--- 112
           +    C +C G+G         C QC GSG   V    G F    +C  C G   ++   
Sbjct: 142 QKLETCEECHGSGCEPGTSPTTCPQCGGSG--QVTQSQGFFSIRTTCPRCRGMGKVIVSP 199

Query: 113 CGNCNGAGFV 122
           C  C+G G V
Sbjct: 200 CKTCHGQGRV 209

Length = 366

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 64  SVVCADCDGNGAV------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDML---CG 114
           +V C DC G+GA        C  C GSG   V    G F+    C +C G+  ++   C 
Sbjct: 144 NVTCDDCGGSGAAPGTSPETCRHCGGSG--QVRQSQGFFQIAVPCPVCRGEGRVITHPCP 201

Query: 115 NCNGAGFV 122
            C G+G V
Sbjct: 202 KCKGSGIV 209

Length = 373

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 62  RNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFK--AGDSCWLCGGKRDM--- 111
           R + +C DC G GA     + C  C G+G   +    G F+     +C  CGG+  +   
Sbjct: 147 RRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEE 206

Query: 112 LCGNCNGAGFV 122
            C  CNG G V
Sbjct: 207 KCPRCNGTGTV 217

Length = 365

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 63  NSVVCADCDGNGAV------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDML---C 113
               C  C G+GA       +C +CKGSG   V    G F    +C  CGG+  ++   C
Sbjct: 157 GYKSCDACSGSGANSSQGIKVCDRCKGSG--QVVQSRGFFSMASTCPECGGEGRVITDPC 214

Query: 114 GNCNGAGFV 122
             C G G +
Sbjct: 215 SVCRGQGRI 223

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.46
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.38
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.32
PRK14282	369	chaperone protein DnaJ; Provisional	99.25
PRK14296	372	chaperone protein DnaJ; Provisional	99.21
PRK14298	377	chaperone protein DnaJ; Provisional	99.21
PRK14278	378	chaperone protein DnaJ; Provisional	99.2
PRK14286	372	chaperone protein DnaJ; Provisional	99.2
PRK14279	392	chaperone protein DnaJ; Provisional	99.19
PRK14285	365	chaperone protein DnaJ; Provisional	99.19
PRK14276	380	chaperone protein DnaJ; Provisional	99.19
PRK14300	372	chaperone protein DnaJ; Provisional	99.19
PRK14280	376	chaperone protein DnaJ; Provisional	99.18
PRK14301	373	chaperone protein DnaJ; Provisional	99.16
PRK14277	386	chaperone protein DnaJ; Provisional	99.16
PRK10767	371	chaperone protein DnaJ; Provisional	99.16
PRK14281	397	chaperone protein DnaJ; Provisional	99.16
PRK14295	389	chaperone protein DnaJ; Provisional	99.16
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.15
PRK14284	391	chaperone protein DnaJ; Provisional	99.15
PRK14289	386	chaperone protein DnaJ; Provisional	99.14
PRK14294	366	chaperone protein DnaJ; Provisional	99.13
PRK14297	380	chaperone protein DnaJ; Provisional	99.12
PRK14293	374	chaperone protein DnaJ; Provisional	99.1
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.1
PRK14290	365	chaperone protein DnaJ; Provisional	99.09
PRK14288	369	chaperone protein DnaJ; Provisional	99.07
PRK14291	382	chaperone protein DnaJ; Provisional	99.07
PRK14283	378	chaperone protein DnaJ; Provisional	99.06
PRK14287	371	chaperone protein DnaJ; Provisional	99.05
PRK14292	371	chaperone protein DnaJ; Provisional	99.02
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.76
KOG2813	406	consensus Predicted molecular chaperone, contains	98.14
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.12
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.06
PRK14288	369	chaperone protein DnaJ; Provisional	97.96
KOG2813	406	consensus Predicted molecular chaperone, contains	97.96
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.73
PRK14287	371	chaperone protein DnaJ; Provisional	97.6
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.4
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.03
PRK14281	397	chaperone protein DnaJ; Provisional	97.02
PRK14296	372	chaperone protein DnaJ; Provisional	97.02
PRK14290	365	chaperone protein DnaJ; Provisional	97.01
PRK14298	377	chaperone protein DnaJ; Provisional	97.0
PRK14279	392	chaperone protein DnaJ; Provisional	97.0
PRK14278	378	chaperone protein DnaJ; Provisional	96.93
PRK14300	372	chaperone protein DnaJ; Provisional	96.92
PRK14286	372	chaperone protein DnaJ; Provisional	96.91
PRK14301	373	chaperone protein DnaJ; Provisional	96.86
PRK14295	389	chaperone protein DnaJ; Provisional	96.82
PRK14280	376	chaperone protein DnaJ; Provisional	96.82
PRK14282	369	chaperone protein DnaJ; Provisional	96.81
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.78
PRK10767	371	chaperone protein DnaJ; Provisional	96.76
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.76
PRK14285	365	chaperone protein DnaJ; Provisional	96.75
PRK14294	366	chaperone protein DnaJ; Provisional	96.71
PRK14277	386	chaperone protein DnaJ; Provisional	96.69
PRK14284	391	chaperone protein DnaJ; Provisional	96.69
PRK14276	380	chaperone protein DnaJ; Provisional	96.63
PRK14289	386	chaperone protein DnaJ; Provisional	96.62
PRK14297	380	chaperone protein DnaJ; Provisional	96.46
PRK14293	374	chaperone protein DnaJ; Provisional	96.38
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.3
PRK14292	371	chaperone protein DnaJ; Provisional	96.27
PRK14283	378	chaperone protein DnaJ; Provisional	96.25
PRK14291	382	chaperone protein DnaJ; Provisional	96.15
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	96.14
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.73
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.65
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	94.67
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	90.08
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	89.71
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	85.04
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	83.48

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.1e-13  Score=117.35  Aligned_cols=73  Identities=33%  Similarity=0.615  Sum_probs=64.3

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      |..|.  ++.+++.+.|+.|+|+|+      ++|++|+|+|++...+..|.++++++|+.|+|+|++   +|++|+|.|+
T Consensus       129 a~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~  208 (371)
T COG0484         129 AVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGR  208 (371)
T ss_pred             hccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCe
Confidence            66676  689999999999999988      799999999998875333889999999999999998   9999999999


Q ss_pred             EeEe
Q 032896          122 VGGF  125 (131)
Q Consensus       122 v~~~  125 (131)
                      +.-+
T Consensus       209 v~~~  212 (371)
T COG0484         209 VKKK  212 (371)
T ss_pred             Eeee
Confidence            7543

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.38  E-value=9.1e-13  Score=95.40  Aligned_cols=69  Identities=32%  Similarity=0.766  Sum_probs=61.1

Q ss_pred             cccceeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecccCCCCceEEeEecccc
Q 032896           60 TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCNGAGFVGGFMSTQ  129 (131)
Q Consensus        60 ~~~r~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C~~C~G~G~v~~~l~~~  129 (131)
                      +....+.|..|+|+|...|+.|+|+|.+.... .+.++.+.+|+.|.|+|+..|+.|+|+|++..||..|
T Consensus        37 ~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~-~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~  105 (111)
T PLN03165         37 KRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL-GGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR  105 (111)
T ss_pred             hhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe-CCcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence            34567899999999999999999999998753 3457789999999999999999999999999999876

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.32  E-value=3.1e-12  Score=84.02  Aligned_cols=54  Identities=41%  Similarity=0.968  Sum_probs=44.7

Q ss_pred             CCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee----cccCCCCce
Q 032896           67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM----LCGNCNGAG  120 (131)
Q Consensus        67 C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~----~C~~C~G~G  120 (131)
                      |+.|+|+|.      .+|+.|+|+|+++..+  +.+.++++.+|+.|+|+|++    +|+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            889999999      7899999999998853  44678999999999999997    799999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.25  E-value=6.4e-12  Score=105.86  Aligned_cols=72  Identities=28%  Similarity=0.652  Sum_probs=61.9

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  .+|+++++.+|+.|.|+|++   +|+.|+|.
T Consensus       139 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  218 (369)
T PRK14282        139 LINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGS  218 (369)
T ss_pred             hcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCc
Confidence            44566  577889999999999997      6899999999998743  45888889999999999997   99999999


Q ss_pred             eEEeE
Q 032896          120 GFVGG  124 (131)
Q Consensus       120 G~v~~  124 (131)
                      |++..
T Consensus       219 g~v~~  223 (369)
T PRK14282        219 GRIRR  223 (369)
T ss_pred             eeEEE
Confidence            98743

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=1.1e-11  Score=104.71  Aligned_cols=71  Identities=28%  Similarity=0.534  Sum_probs=61.0

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCc--eecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|..|+|+|.      .+|+.|+|+|+++..+..|+  ++.+.+|+.|.|+|++   +|+.|+|+
T Consensus       136 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~  215 (372)
T PRK14296        136 LLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGK  215 (372)
T ss_pred             hhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCc
Confidence            45566  688899999999999997      67999999999988665665  4567899999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       216 g~v~  219 (372)
T PRK14296        216 GKYL  219 (372)
T ss_pred             eEEE
Confidence            9873

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=1.1e-11  Score=105.04  Aligned_cols=71  Identities=31%  Similarity=0.593  Sum_probs=61.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  +.|.++.+.+|+.|.|+|++   +|+.|+|+
T Consensus       128 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  207 (377)
T PRK14298        128 AAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGT  207 (377)
T ss_pred             hhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence            44566  578899999999999998      6899999999998743  34668899999999999987   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       208 g~v~  211 (377)
T PRK14298        208 GKVR  211 (377)
T ss_pred             cEEE
Confidence            9874

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=1.2e-11  Score=104.65  Aligned_cols=71  Identities=32%  Similarity=0.650  Sum_probs=61.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEe--ecCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~--~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..  .+.|+++.+.+|+.|.|+|++   +|+.|+|+
T Consensus       126 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  205 (378)
T PRK14278        126 CATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGD  205 (378)
T ss_pred             hcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCc
Confidence            44566  578899999999999997      689999999998774  345778888999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       206 g~v~  209 (378)
T PRK14278        206 GRVR  209 (378)
T ss_pred             eeEe
Confidence            9873

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=1.3e-11  Score=104.28  Aligned_cols=69  Identities=33%  Similarity=0.681  Sum_probs=61.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++++.+.|+.|+|+|.      ..|+.|+|+|+++..  .|+++++.+|+.|.|+|++   +|+.|+|+|+
T Consensus       137 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  214 (372)
T PRK14286        137 AALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT--QGFFSVATTCPTCRGKGTVISNPCKTCGGQGL  214 (372)
T ss_pred             HhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE--eceEEEEEeCCCCCceeeEecccCCCCCCCcE
Confidence            44566  578899999999999997      689999999998776  4888899999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       215 ~~  216 (372)
T PRK14286        215 QE  216 (372)
T ss_pred             Ee
Confidence            74

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=1.3e-11  Score=104.97  Aligned_cols=69  Identities=32%  Similarity=0.712  Sum_probs=60.7

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      .+|+.|+|+|+++..  .|+++++.+|+.|.|+|++   +|+.|+|.|+
T Consensus       160 ~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~  237 (392)
T PRK14279        160 AAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN--QGAFGFSEPCTDCRGTGSIIEDPCEECKGTGV  237 (392)
T ss_pred             HhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEE--ecceEEEEecCCCCceeEEeCCcCCCCCCCeE
Confidence            44566  577899999999999997      679999999998876  4777889999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       238 v~  239 (392)
T PRK14279        238 TT  239 (392)
T ss_pred             EE
Confidence            74

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=1.3e-11  Score=104.04  Aligned_cols=69  Identities=28%  Similarity=0.648  Sum_probs=60.7

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++++.+.|..|+|+|.      ..|+.|+|+|+++..  .|+++.+.+|+.|.|+|++   +|+.|+|+|+
T Consensus       133 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  210 (365)
T PRK14285        133 AYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG--GGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS  210 (365)
T ss_pred             hhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec--CceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence            44566  578899999999999997      679999999998864  5888899999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       211 v~  212 (365)
T PRK14285        211 LK  212 (365)
T ss_pred             Ee
Confidence            73

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=1.5e-11  Score=104.14  Aligned_cols=71  Identities=32%  Similarity=0.667  Sum_probs=61.4

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++.+.+|+.|.|+|++   +|+.|+|.
T Consensus       133 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  212 (380)
T PRK14276        133 AIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGT  212 (380)
T ss_pred             hcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCc
Confidence            44566  588899999999999997      6899999999998753  35778889999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       213 g~~~  216 (380)
T PRK14276        213 GHEK  216 (380)
T ss_pred             eEEE
Confidence            9874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.19  E-value=1.8e-11  Score=103.37  Aligned_cols=69  Identities=28%  Similarity=0.668  Sum_probs=60.8

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      .+|+.|+|+|+++..  .|+++++.+|+.|.|+|++   +|+.|+|+|+
T Consensus       132 ~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  209 (372)
T PRK14300        132 AFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ--QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGR  209 (372)
T ss_pred             HhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEe--eceEEEEEeCCCCCccceEeCCCCCCCCCceE
Confidence            44566  578899999999999996      789999999998865  5888889999999999997   9999999999


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       210 v~  211 (372)
T PRK14300        210 YH  211 (372)
T ss_pred             EE
Confidence            84

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.18  E-value=2.4e-11  Score=102.73  Aligned_cols=71  Identities=31%  Similarity=0.585  Sum_probs=61.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++.+.+|+.|.|+|++   +|+.|+|+
T Consensus       130 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  209 (376)
T PRK14280        130 AVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGK  209 (376)
T ss_pred             HhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCc
Confidence            44566  588899999999999997      6899999999987743  35778889999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       210 g~v~  213 (376)
T PRK14280        210 GKVR  213 (376)
T ss_pred             eEEE
Confidence            9874

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=2.2e-11  Score=102.95  Aligned_cols=69  Identities=35%  Similarity=0.737  Sum_probs=60.6

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|++...  .|+++++.+|+.|.|+|++   +|+.|+|+|+
T Consensus       131 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (373)
T PRK14301        131 AAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQS--QGFFQIAVPCPVCRGEGRVITHPCPKCKGSGI  208 (373)
T ss_pred             HhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEE--eeeEEEEEeCCCCCceeeecCCCCCCCCCCce
Confidence            44566  577889999999999997      679999999998865  4888889999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       209 v~  210 (373)
T PRK14301        209 VQ  210 (373)
T ss_pred             ec
Confidence            73

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=2.4e-11  Score=103.04  Aligned_cols=71  Identities=28%  Similarity=0.541  Sum_probs=61.0

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      .+|+.|+|+|+++..+  ..|+++...+|+.|.|+|++   +|+.|+|+
T Consensus       142 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  221 (386)
T PRK14277        142 AAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGT  221 (386)
T ss_pred             HhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCC
Confidence            44566  578899999999999997      6899999999988743  35778888999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       222 g~v~  225 (386)
T PRK14277        222 GRIR  225 (386)
T ss_pred             cEEe
Confidence            9873

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=2.8e-11  Score=101.90  Aligned_cols=69  Identities=30%  Similarity=0.671  Sum_probs=60.5

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+.+.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  |+++.+.+|+.|.|+|++   +|+.|+|+|+
T Consensus       129 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  206 (371)
T PRK10767        129 AVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR  206 (371)
T ss_pred             hhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence            44566  578899999999999997      5899999999988763  888889999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       207 v~  208 (371)
T PRK10767        207 VE  208 (371)
T ss_pred             Ee
Confidence            74

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=2.4e-11  Score=103.43  Aligned_cols=71  Identities=31%  Similarity=0.639  Sum_probs=60.8

Q ss_pred             ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEe--ecCCceecceecCCcccccee---cccCCCCce
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGGKRDM---LCGNCNGAG  120 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~--~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G  120 (131)
                      +..|.  .+++.+.+.|+.|+|+|.     ..|+.|+|+|+++..  .+.|+++.+.+|+.|.|+|++   +|+.|+|.|
T Consensus       150 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  229 (397)
T PRK14281        150 IAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEG  229 (397)
T ss_pred             HhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCc
Confidence            44455  577899999999999997     679999999998774  345778888999999999997   999999999


Q ss_pred             EEe
Q 032896          121 FVG  123 (131)
Q Consensus       121 ~v~  123 (131)
                      ++.
T Consensus       230 ~v~  232 (397)
T PRK14281        230 IKQ  232 (397)
T ss_pred             cEe
Confidence            874

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.16  E-value=2.7e-11  Score=102.92  Aligned_cols=70  Identities=27%  Similarity=0.601  Sum_probs=61.1

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++...  |.++.+.+|+.|.|+|++   +|+.|+|+|+
T Consensus       153 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  230 (389)
T PRK14295        153 AIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFSLSEPCPDCKGRGLIADDPCLVCKGSGR  230 (389)
T ss_pred             HhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceEEEEecCCCcceeEEeccCCCCCCCCce
Confidence            44566  678899999999999997      6899999999998763  778889999999999997   9999999998


Q ss_pred             EeE
Q 032896          122 VGG  124 (131)
Q Consensus       122 v~~  124 (131)
                      +..
T Consensus       231 ~~~  233 (389)
T PRK14295        231 AKS  233 (389)
T ss_pred             Eee
Confidence            743

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.15  E-value=3.7e-11  Score=100.38  Aligned_cols=71  Identities=30%  Similarity=0.589  Sum_probs=60.8

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeec--CCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~--~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+.  .|+++++.+|+.|.|+|++   +|+.|+|+
T Consensus       130 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  209 (354)
T TIGR02349       130 AVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGK  209 (354)
T ss_pred             HhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCC
Confidence            44465  577899999999999996      67999999999988543  4678888999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       210 g~v~  213 (354)
T TIGR02349       210 GRVK  213 (354)
T ss_pred             cEec
Confidence            9874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.15  E-value=3e-11  Score=102.57  Aligned_cols=69  Identities=33%  Similarity=0.690  Sum_probs=60.5

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..  .|+++++.+|+.|.|+|++   +|+.|+|.|+
T Consensus       145 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  222 (391)
T PRK14284        145 AAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQS--RGFFSMASTCPECGGEGRVITDPCSVCRGQGR  222 (391)
T ss_pred             HhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEE--eceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence            44566  577899999999999998      679999999998876  3888899999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       223 v~  224 (391)
T PRK14284        223 IK  224 (391)
T ss_pred             ec
Confidence            73

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.14  E-value=3.7e-11  Score=101.69  Aligned_cols=72  Identities=31%  Similarity=0.659  Sum_probs=61.7

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++.+.+|+.|.|+|++   +|+.|+|+
T Consensus       141 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  220 (386)
T PRK14289        141 ISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGE  220 (386)
T ss_pred             hhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCC
Confidence            44455  577899999999999997      7899999999998854  34778889999999999997   99999999


Q ss_pred             eEEeE
Q 032896          120 GFVGG  124 (131)
Q Consensus       120 G~v~~  124 (131)
                      |++..
T Consensus       221 g~v~~  225 (386)
T PRK14289        221 GIVYG  225 (386)
T ss_pred             cEEee
Confidence            98743

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.13  E-value=4.1e-11  Score=100.86  Aligned_cols=69  Identities=32%  Similarity=0.657  Sum_probs=60.5

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..  .|+++.+.+|+.|.|+|++   +|+.|+|.|+
T Consensus       131 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  208 (366)
T PRK14294        131 AAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQS--QGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR  208 (366)
T ss_pred             hcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEE--eeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence            44566  577889999999999997      589999999998765  4888899999999999997   9999999998


Q ss_pred             Ee
Q 032896          122 VG  123 (131)
Q Consensus       122 v~  123 (131)
                      +.
T Consensus       209 v~  210 (366)
T PRK14294        209 VR  210 (366)
T ss_pred             ee
Confidence            74

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=5e-11  Score=100.80  Aligned_cols=70  Identities=31%  Similarity=0.648  Sum_probs=60.6

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++.+.+|+.|.|+|++   +|..|+|.
T Consensus       135 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  214 (380)
T PRK14297        135 AVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGK  214 (380)
T ss_pred             hcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCC
Confidence            44566  578899999999999997      6799999999987743  45778889999999999997   99999999


Q ss_pred             eEE
Q 032896          120 GFV  122 (131)
Q Consensus       120 G~v  122 (131)
                      |++
T Consensus       215 g~v  217 (380)
T PRK14297        215 GKV  217 (380)
T ss_pred             eEE
Confidence            976

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=7.1e-11  Score=99.71  Aligned_cols=71  Identities=28%  Similarity=0.549  Sum_probs=60.6

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++++.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++++.+|+.|.|+|++   +|+.|+|+
T Consensus       130 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  209 (374)
T PRK14293        130 AIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQ  209 (374)
T ss_pred             HhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCC
Confidence            34455  578899999999999998      6799999999988754  34778888999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       210 g~v~  213 (374)
T PRK14293        210 GVKQ  213 (374)
T ss_pred             cccc
Confidence            9873

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.10  E-value=7.8e-11  Score=101.36  Aligned_cols=72  Identities=28%  Similarity=0.647  Sum_probs=60.1

Q ss_pred             ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc--eecceecCCcccccee-----cccCCCC
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM-----LCGNCNG  118 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~-----~C~~C~G  118 (131)
                      +..|.  .+++.+.+.|+.|+|+|.     .+|+.|+|+|+++..+..|.  ++++.+|+.|.|+|++     +|+.|+|
T Consensus       137 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G  216 (421)
T PTZ00037        137 IYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSG  216 (421)
T ss_pred             HhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCC
Confidence            44565  578899999999999998     68999999999777554564  4678999999999986     7999999


Q ss_pred             ceEEeE
Q 032896          119 AGFVGG  124 (131)
Q Consensus       119 ~G~v~~  124 (131)
                      +|++..
T Consensus       217 ~g~v~~  222 (421)
T PTZ00037        217 KGVKKT  222 (421)
T ss_pred             cceeee
Confidence            998843

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.09  E-value=1e-10  Score=98.42  Aligned_cols=72  Identities=33%  Similarity=0.705  Sum_probs=61.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCce--ecceecCCcccccee---cccCCCCce
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF--KAGDSCWLCGGKRDM---LCGNCNGAG  120 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~~--~~~~~C~~C~G~G~~---~C~~C~G~G  120 (131)
                      +..|.  .+++.+.+.|+.|+|+|.     ..|+.|+|+|+++..+.+|++  +.+.+|+.|.|+|++   +|+.|+|+|
T Consensus       136 ~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g  215 (365)
T PRK14290        136 AYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTG  215 (365)
T ss_pred             hcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCce
Confidence            44455  578899999999999998     689999999999887666765  457899999999987   999999999


Q ss_pred             EEeE
Q 032896          121 FVGG  124 (131)
Q Consensus       121 ~v~~  124 (131)
                      ++..
T Consensus       216 ~v~~  219 (365)
T PRK14290        216 TVVV  219 (365)
T ss_pred             eEEE
Confidence            9754

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.07  E-value=1.8e-10  Score=97.27  Aligned_cols=70  Identities=30%  Similarity=0.640  Sum_probs=60.7

Q ss_pred             ecccC--cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceEE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFV  122 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v  122 (131)
                      +..|.  ++++++.+.|+.|+|+|.     ..|+.|+|+|+++..  .|+++++.+|+.|.|+|++   +|+.|+|.|++
T Consensus       127 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  204 (369)
T PRK14288        127 AVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMR--QGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI  204 (369)
T ss_pred             HhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEE--eceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence            44566  678889999999999997     689999999998776  4778888899999999997   99999999987


Q ss_pred             eE
Q 032896          123 GG  124 (131)
Q Consensus       123 ~~  124 (131)
                      ..
T Consensus       205 ~~  206 (369)
T PRK14288        205 LK  206 (369)
T ss_pred             EE
Confidence            43

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.07  E-value=1.2e-10  Score=98.62  Aligned_cols=69  Identities=35%  Similarity=0.731  Sum_probs=60.2

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee--cccCCCCceEE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM--LCGNCNGAGFV  122 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G~v  122 (131)
                      +..|.  .+++.+.+.|..|+|+|.      ..|+.|+|+|+++..  .|+++.+.+|+.|.|+|.+  +|+.|+|.|++
T Consensus       143 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v  220 (382)
T PRK14291        143 AYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR--GGFFRISQTCPTCGGEGVLREPCSKCNGRGLV  220 (382)
T ss_pred             hhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEe--cceEEEEecCCCCCCceEEccCCCCCCCCceE
Confidence            44466  578899999999999996      689999999998876  4778889999999999977  99999999987


Q ss_pred             e
Q 032896          123 G  123 (131)
Q Consensus       123 ~  123 (131)
                      .
T Consensus       221 ~  221 (382)
T PRK14291        221 I  221 (382)
T ss_pred             E
Confidence            4

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.06  E-value=1.5e-10  Score=97.89  Aligned_cols=71  Identities=31%  Similarity=0.591  Sum_probs=60.8

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|+++..+  ..|+++.+.+|+.|.|+|+.   +|..|+|+
T Consensus       133 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~  212 (378)
T PRK14283        133 AASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGK  212 (378)
T ss_pred             HhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCc
Confidence            44566  577889999999999997      6799999999998754  34778888999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |.+.
T Consensus       213 g~v~  216 (378)
T PRK14283        213 GVVR  216 (378)
T ss_pred             eeec
Confidence            9873

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.05  E-value=1.9e-10  Score=97.19  Aligned_cols=71  Identities=31%  Similarity=0.598  Sum_probs=61.1

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCCc
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNGA  119 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G~  119 (131)
                      +..|.  .+++.+.+.|+.|+|+|.      ..|+.|+|+|++...+  ..|+++.+.+|+.|.|+|++   +|..|.|.
T Consensus       125 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~  204 (371)
T PRK14287        125 AVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGK  204 (371)
T ss_pred             hcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCe
Confidence            44566  688899999999999996      6799999999987743  45778889999999999997   99999999


Q ss_pred             eEEe
Q 032896          120 GFVG  123 (131)
Q Consensus       120 G~v~  123 (131)
                      |++.
T Consensus       205 g~v~  208 (371)
T PRK14287        205 GKVR  208 (371)
T ss_pred             eEEe
Confidence            9874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.02  E-value=2.3e-10  Score=96.38  Aligned_cols=71  Identities=24%  Similarity=0.530  Sum_probs=60.5

Q ss_pred             ecccC--cccccceeeCCCCCcCCc-------ccCCCCCCccEEEEee--cCCceecceecCCcccccee---cccCCCC
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGGKRDM---LCGNCNG  118 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~-------~~C~~C~GsG~~~~~~--~~G~~~~~~~C~~C~G~G~~---~C~~C~G  118 (131)
                      +..|.  .+++.+.+.|+.|+|+|.       ..|+.|+|+|++...+  ..|+++++.+|+.|.|.|+.   +|+.|.|
T Consensus       126 ~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G  205 (371)
T PRK14292        126 ARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRG  205 (371)
T ss_pred             HcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCC
Confidence            33455  577889999999999996       5799999999998743  45888889999999999997   9999999


Q ss_pred             ceEEe
Q 032896          119 AGFVG  123 (131)
Q Consensus       119 ~G~v~  123 (131)
                      +|++.
T Consensus       206 ~g~v~  210 (371)
T PRK14292        206 RGRTL  210 (371)
T ss_pred             ceEEe
Confidence            99873

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=7.1e-09  Score=87.32  Aligned_cols=65  Identities=29%  Similarity=0.627  Sum_probs=57.8

Q ss_pred             cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc---eecceecCCcccccee-----cccCCCCceEE
Q 032896           58 GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ---FKAGDSCWLCGGKRDM-----LCGNCNGAGFV  122 (131)
Q Consensus        58 ~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~---~~~~~~C~~C~G~G~~-----~C~~C~G~G~v  122 (131)
                      .+.++++.+|+.|+|+|.     ..|+.|.|+|..+..++.|.   .+++..|..|.|.|..     .|+.|+|++++
T Consensus       121 kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  121 KLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVV  198 (337)
T ss_pred             ceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhh
Confidence            577899999999999999     67999999999998665654   4578999999999997     99999999987

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.4e-06  Score=73.58  Aligned_cols=61  Identities=31%  Similarity=0.716  Sum_probs=41.3

Q ss_pred             eeCCCCCcCCcccCCCCCCccEEEE--------eecCCc---------------eecceecCCccccceecccCCCCceE
Q 032896           65 VVCADCDGNGAVLCSQCKGSGVNAV--------DFFGGQ---------------FKAGDSCWLCGGKRDMLCGNCNGAGF  121 (131)
Q Consensus        65 ~~C~~C~GsG~~~C~~C~GsG~~~~--------~~~~G~---------------~~~~~~C~~C~G~G~~~C~~C~G~G~  121 (131)
                      ..|..|.|.|...|+.|+|+|....        ....|.               =....+|++|+|+|+++|.+|.|.|.
T Consensus       188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs  267 (406)
T KOG2813|consen  188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS  267 (406)
T ss_pred             hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence            5688888888888888888884221        111221               01235778888888888888888887


Q ss_pred             EeEe
Q 032896          122 VGGF  125 (131)
Q Consensus       122 v~~~  125 (131)
                      +..|
T Consensus       268 ll~~  271 (406)
T KOG2813|consen  268 LLNY  271 (406)
T ss_pred             eeee
Confidence            7655

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.12  E-value=2.5e-06  Score=55.87  Aligned_cols=47  Identities=28%  Similarity=0.772  Sum_probs=32.9

Q ss_pred             cccCcc-cccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecCCceecceecCCccccc
Q 032896           54 AANNGN-TKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKR  109 (131)
Q Consensus        54 ~~g~~~-~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G  109 (131)
                      +.|.+. .-.....|+.|+|+|.               .+|+.|+|+|.++ .        ..+|+.|.|.|
T Consensus         4 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~--------~~~C~~C~G~g   66 (66)
T PF00684_consen    4 CNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E--------KDPCKTCKGSG   66 (66)
T ss_dssp             CTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T--------SSB-SSSTTSS
T ss_pred             CCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C--------CCCCCCCCCcC
Confidence            445544 4456789999999998               6899999999996 1        23999999976

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.06  E-value=3.2e-06  Score=75.86  Aligned_cols=61  Identities=28%  Similarity=0.506  Sum_probs=49.5

Q ss_pred             eeCCCCCcCCc-----ccCCCCCCccEEEEeec-----------CCceecceecCCcccccee----cccCCCCceEEeE
Q 032896           65 VVCADCDGNGA-----VLCSQCKGSGVNAVDFF-----------GGQFKAGDSCWLCGGKRDM----LCGNCNGAGFVGG  124 (131)
Q Consensus        65 ~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~-----------~G~~~~~~~C~~C~G~G~~----~C~~C~G~G~v~~  124 (131)
                      ..|+.|+|+|.     +.|+.|+|+|....-.+           .+......+|+.|+|+|.+    .|+.|.|+|.+..
T Consensus         3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~   82 (715)
T COG1107           3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT   82 (715)
T ss_pred             ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence            57999999999     67999999999843211           1223457899999999997    9999999999877


Q ss_pred             e
Q 032896          125 F  125 (131)
Q Consensus       125 ~  125 (131)
                      |
T Consensus        83 c   83 (715)
T COG1107          83 C   83 (715)
T ss_pred             e
Confidence            6

>PRK14288 chaperone protein DnaJ; Provisional

Probab=97.96  E-value=4.4e-06  Score=70.73  Aligned_cols=78  Identities=19%  Similarity=0.435  Sum_probs=54.9

Q ss_pred             CCCCCCC-ceeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc-----------ccCCCCCCccEEEE
Q 032896           24 DSSSDSK-DHLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA-----------VLCSQCKGSGVNAV   89 (131)
Q Consensus        24 ~~~~~~~-~~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~   89 (131)
                      |+++... .|+++|++.+. +..++....+ ..+.|.+..-.....|+.|+|+|.           ..|+.|+|+|.+..
T Consensus       113 g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  192 (369)
T PRK14288        113 APDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK  192 (369)
T ss_pred             CCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence            4444433 36888888875 4444443322 456666554456788999999996           46999999999865


Q ss_pred             eecCCceecceecCCcccccee
Q 032896           90 DFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        90 ~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      .          +|..|.|.|.+
T Consensus       193 ~----------~C~~C~G~g~v  204 (369)
T PRK14288        193 T----------PCQACKGKTYI  204 (369)
T ss_pred             c----------cCccCCCcceE
Confidence            4          79999998864

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=7.1e-06  Score=69.33  Aligned_cols=10  Identities=30%  Similarity=0.840  Sum_probs=5.8

Q ss_pred             ecCCccccce
Q 032896          101 SCWLCGGKRD  110 (131)
Q Consensus       101 ~C~~C~G~G~  110 (131)
                      +|.+|.|+|.
T Consensus       258 ~C~TC~gtgs  267 (406)
T KOG2813|consen  258 PCTTCSGTGS  267 (406)
T ss_pred             ccccccCccc
Confidence            5666666554

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2.4e-05  Score=66.86  Aligned_cols=81  Identities=20%  Similarity=0.404  Sum_probs=65.3

Q ss_pred             cccCCCCCCCc-eeecccCCCC-ccccccceee-eecccCccccc-ceeeCCCCCcCCc-------------ccCCCCCC
Q 032896           21 AHVDSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKR-NSVVCADCDGNGA-------------VLCSQCKG   83 (131)
Q Consensus        21 ~~~~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~-r~~~C~~C~GsG~-------------~~C~~C~G   83 (131)
                      ...|+++.-.. |+++|++.+. +..++..... ..+.|.+.+-. ..+.|++|+|+|.             .+|+.|+|
T Consensus       112 ~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G  191 (371)
T COG0484         112 PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNG  191 (371)
T ss_pred             cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence            34566666554 7999999887 5577776665 78888866665 7899999999996             68999999


Q ss_pred             ccEEEEeecCCceecceecCCcccccee
Q 032896           84 SGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        84 sG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      +|.+...          +|+.|.|.|.+
T Consensus       192 ~G~~i~~----------pC~~C~G~G~v  209 (371)
T COG0484         192 TGKIIKD----------PCGKCKGKGRV  209 (371)
T ss_pred             ceeECCC----------CCCCCCCCCeE
Confidence            9999755          99999999985

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.60  E-value=2.3e-05  Score=66.40  Aligned_cols=70  Identities=20%  Similarity=0.489  Sum_probs=48.2

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.               .+|+.|+|+|.+...   
T Consensus       120 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  196 (371)
T PRK14287        120 LEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ---  196 (371)
T ss_pred             EEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc---
Confidence            5777888765 3344433322 4566664332 34578999999985               469999999998654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|..|.|.+.+
T Consensus       197 -------~C~~C~G~g~v  207 (371)
T PRK14287        197 -------KCATCGGKGKV  207 (371)
T ss_pred             -------cCCCCCCeeEE
Confidence                   79999998865

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.40  E-value=0.00015  Score=65.48  Aligned_cols=24  Identities=33%  Similarity=0.955  Sum_probs=11.0

Q ss_pred             eeCCCCCcCCc----ccCCCCCCccEEE
Q 032896           65 VVCADCDGNGA----VLCSQCKGSGVNA   88 (131)
Q Consensus        65 ~~C~~C~GsG~----~~C~~C~GsG~~~   88 (131)
                      ++|+.|+|+|.    ..|+.|.|+|.+.
T Consensus        54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107          54 IPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             CCCCeeccceeEEEEeecccCCCceeEE
Confidence            34444444444    3444444444443

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.03  E-value=0.00046  Score=50.06  Aligned_cols=33  Identities=36%  Similarity=0.822  Sum_probs=22.8

Q ss_pred             eCCCCCcCCc------------ccCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032896           66 VCADCDGNGA------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        66 ~C~~C~GsG~------------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      .|+.|+|+|.            ..|+.|+|+|++             .|..|.|+|..
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-------------~C~~C~G~G~~   98 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-------------TCTTCQGSGIQ   98 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-------------eCCCCCCCEEE
Confidence            6777777766            467777777753             47777777764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.02  E-value=0.00049  Score=58.83  Aligned_cols=70  Identities=23%  Similarity=0.484  Sum_probs=50.4

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecCC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGG   94 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~G   94 (131)
                      |+++|++.+. +..++....+ ..+.|.+........|+.|+|+|.               .+|+.|+|+|.+...    
T Consensus       145 vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~----  220 (397)
T PRK14281        145 LTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKD----  220 (397)
T ss_pred             eEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCC----
Confidence            5777888765 3344433222 356666555456788999999995               469999999998654    


Q ss_pred             ceecceecCCcccccee
Q 032896           95 QFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        95 ~~~~~~~C~~C~G~G~~  111 (131)
                            +|..|.|+|.+
T Consensus       221 ------~C~~C~G~g~v  231 (397)
T PRK14281        221 ------RCPACYGEGIK  231 (397)
T ss_pred             ------CCCCCCCCccE
Confidence                  79999998875

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.02  E-value=0.00056  Score=58.07  Aligned_cols=78  Identities=21%  Similarity=0.418  Sum_probs=52.9

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS   84 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs   84 (131)
                      |.++..+. |+++|++.+. +..++....+ ..+.|.+.+- .....|+.|+|+|.               .+|+.|+|+
T Consensus       122 g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~  201 (372)
T PRK14296        122 GQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGA  201 (372)
T ss_pred             CCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCc
Confidence            33443332 5777888765 3344433332 4566765433 34578999999996               279999999


Q ss_pred             cEEEEeecCCceecceecCCcccccee
Q 032896           85 GVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        85 G~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      |.+...          +|+.|.|+|.+
T Consensus       202 G~~~~~----------~C~~C~G~g~v  218 (372)
T PRK14296        202 GKIIKN----------KCKNCKGKGKY  218 (372)
T ss_pred             ceeecc----------cccCCCCceEE
Confidence            999755          79999998864

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.01  E-value=0.00053  Score=57.92  Aligned_cols=78  Identities=21%  Similarity=0.418  Sum_probs=53.0

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCcc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSG   85 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG   85 (131)
                      ++++..+. |+++|++.+. +..++....+ ..+.|.+........|+.|+|+|.               .+|+.|+|.|
T Consensus       122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G  201 (365)
T PRK14290        122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRG  201 (365)
T ss_pred             CCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCce
Confidence            34444443 6888888775 3333332222 346666554456788999999995               4799999999


Q ss_pred             EEEEeecCCceecceecCCcccccee
Q 032896           86 VNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        86 ~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      .+...          +|+.|.|+|.+
T Consensus       202 ~~~~~----------~C~~C~G~g~v  217 (365)
T PRK14290        202 RIPEE----------KCPRCNGTGTV  217 (365)
T ss_pred             eEccC----------CCCCCCCceeE
Confidence            88544          89999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=97.00  E-value=0.00046  Score=58.69  Aligned_cols=70  Identities=20%  Similarity=0.468  Sum_probs=48.7

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+.+. .....|+.|+|+|.               .+|+.|+|+|.++..   
T Consensus       123 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---  199 (377)
T PRK14298        123 ITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES---  199 (377)
T ss_pred             EEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC---
Confidence            5778888775 3333433222 4566665433 33478999999985               479999999988644   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|+.|.|+|.+
T Consensus       200 -------~C~~C~G~g~v  210 (377)
T PRK14298        200 -------PCPVCSGTGKV  210 (377)
T ss_pred             -------CCCCCCCccEE
Confidence                   79999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.00  E-value=0.00044  Score=59.10  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=47.3

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.           .+|+.|+|+|+++..       
T Consensus       155 ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~-------  227 (392)
T PRK14279        155 LDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIED-------  227 (392)
T ss_pred             EEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCC-------
Confidence            5666777664 3333332222 3456664332 34678999999987           479999999998654       


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                         +|..|.|.|.+
T Consensus       228 ---~C~~C~G~g~v  238 (392)
T PRK14279        228 ---PCEECKGTGVT  238 (392)
T ss_pred             ---cCCCCCCCeEE
Confidence               79999998864

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.93  E-value=0.00071  Score=57.55  Aligned_cols=70  Identities=21%  Similarity=0.520  Sum_probs=49.3

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+.+- .....|+.|+|+|.               .+|+.|+|+|.+...   
T Consensus       121 vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---  197 (378)
T PRK14278        121 LDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPD---  197 (378)
T ss_pred             EEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCC---
Confidence            6788888775 3344433222 3566664333 34578999999995               469999999998654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|+.|.|+|.+
T Consensus       198 -------~C~~C~G~g~v  208 (378)
T PRK14278        198 -------PCHECAGDGRV  208 (378)
T ss_pred             -------CCCCCCCceeE
Confidence                   79999999874

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.92  E-value=0.00064  Score=57.62  Aligned_cols=78  Identities=22%  Similarity=0.387  Sum_probs=51.6

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA   88 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~   88 (131)
                      |+++.... |+++|++.+. +..++..... ..+.|.+..- .....|+.|+|+|.           .+|+.|+|.|.+.
T Consensus       118 g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  197 (372)
T PRK14300        118 GSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII  197 (372)
T ss_pred             CCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence            33333332 5777888765 3344433222 3456665433 34578999999986           4699999999886


Q ss_pred             EeecCCceecceecCCcccccee
Q 032896           89 VDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        89 ~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..          +|..|.|+|.+
T Consensus       198 ~~----------~C~~C~G~g~v  210 (372)
T PRK14300        198 KN----------PCKKCHGMGRY  210 (372)
T ss_pred             CC----------CCCCCCCceEE
Confidence            54          79999998874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.91  E-value=0.00067  Score=57.55  Aligned_cols=78  Identities=22%  Similarity=0.479  Sum_probs=51.9

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA   88 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~   88 (131)
                      |+++.... |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.           .+|+.|+|+|++.
T Consensus       123 g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  202 (372)
T PRK14286        123 GSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI  202 (372)
T ss_pred             CCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence            33443332 5778888775 3344433322 4556665433 23478999999996           4799999999886


Q ss_pred             EeecCCceecceecCCcccccee
Q 032896           89 VDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        89 ~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..          +|..|.|+|.+
T Consensus       203 ~~----------~C~~C~G~g~~  215 (372)
T PRK14286        203 SN----------PCKTCGGQGLQ  215 (372)
T ss_pred             cc----------cCCCCCCCcEE
Confidence            54          79999998875

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.86  E-value=0.00071  Score=57.44  Aligned_cols=78  Identities=21%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA   88 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~   88 (131)
                      |+++..+. |+++|++.+. +..++....+ ..+.|.+... .....|+.|+|+|.           ..|+.|+|+|.+.
T Consensus       117 g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        117 GSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             CCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence            33443332 5777888765 3333332222 3455654332 34578999999986           5799999999986


Q ss_pred             EeecCCceecceecCCcccccee
Q 032896           89 VDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        89 ~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..          +|+.|.|+|.+
T Consensus       197 ~~----------~C~~C~G~g~v  209 (373)
T PRK14301        197 TH----------PCPKCKGSGIV  209 (373)
T ss_pred             CC----------CCCCCCCCcee
Confidence            54          79999998864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.82  E-value=0.00087  Score=57.25  Aligned_cols=70  Identities=29%  Similarity=0.555  Sum_probs=48.9

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.           .+|+.|+|+|.++..       
T Consensus       148 lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------  220 (389)
T PRK14295        148 LSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADD-------  220 (389)
T ss_pred             EEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEecc-------
Confidence            5777777765 3344433222 4566664433 34578999999986           579999999998654       


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                         +|..|.|+|.+
T Consensus       221 ---~C~~C~G~g~~  231 (389)
T PRK14295        221 ---PCLVCKGSGRA  231 (389)
T ss_pred             ---CCCCCCCCceE
Confidence               89999998864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.82  E-value=0.0008  Score=57.13  Aligned_cols=70  Identities=20%  Similarity=0.490  Sum_probs=47.8

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.               .+|+.|+|+|.+...   
T Consensus       125 vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---  201 (376)
T PRK14280        125 LTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE---  201 (376)
T ss_pred             EEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC---
Confidence            5777888775 3344433222 3456664333 34578999999985               369999999988654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|+.|.|+|.+
T Consensus       202 -------~C~~C~G~g~v  212 (376)
T PRK14280        202 -------KCPTCHGKGKV  212 (376)
T ss_pred             -------CCCCCCCceEE
Confidence                   79999998864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.81  E-value=0.00092  Score=56.58  Aligned_cols=78  Identities=19%  Similarity=0.408  Sum_probs=51.8

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS   84 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs   84 (131)
                      |+++..+. |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.               ..|+.|+|+
T Consensus       125 g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~  204 (369)
T PRK14282        125 GEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGT  204 (369)
T ss_pred             CCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCc
Confidence            34443332 6778888765 3333333222 4566665433 34578999999996               469999999


Q ss_pred             cEEEEeecCCceecceecCCcccccee
Q 032896           85 GVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        85 G~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      |.+...          .|..|.|+|.+
T Consensus       205 G~~~~~----------~C~~C~G~g~v  221 (369)
T PRK14282        205 GKIPGE----------YCHECGGSGRI  221 (369)
T ss_pred             ceeCCC----------CCCCCCCceeE
Confidence            988644          79999998863

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.78  E-value=0.0011  Score=57.33  Aligned_cols=80  Identities=20%  Similarity=0.369  Sum_probs=55.7

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCcc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSG   85 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG   85 (131)
                      |.++..+. |+++|++.+. +..++....+ ..+.|.+..-.....|+.|+|+|.               .+|+.|+|+|
T Consensus       123 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G  202 (421)
T PTZ00037        123 GEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQG  202 (421)
T ss_pred             CCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcc
Confidence            44444443 6888999875 3344433322 567777655556788999999994               3799999999


Q ss_pred             EEEEeecCCceecceecCCcccccee
Q 032896           86 VNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        86 ~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      .+...        ..+|..|.|+|.+
T Consensus       203 ~~i~~--------~~~C~~C~G~g~v  220 (421)
T PTZ00037        203 KIIPE--------SKKCKNCSGKGVK  220 (421)
T ss_pred             eeccc--------cccCCcCCCccee
Confidence            98641        2389999999874

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.001  Score=56.28  Aligned_cols=70  Identities=21%  Similarity=0.529  Sum_probs=47.9

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +...+....+ ..+.|.+..- .....|+.|+|+|.           .+|+.|+|+|.+...       
T Consensus       124 vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------  196 (371)
T PRK10767        124 ITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKD-------  196 (371)
T ss_pred             eehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCC-------
Confidence            5777888765 3333332222 3556664332 34568999999997           359999999998644       


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                         +|..|.|+|.+
T Consensus       197 ---~C~~C~G~g~v  207 (371)
T PRK10767        197 ---PCKKCHGQGRV  207 (371)
T ss_pred             ---CCCCCCCCceE
Confidence               79999998874

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.76  E-value=0.001  Score=55.73  Aligned_cols=70  Identities=20%  Similarity=0.457  Sum_probs=48.8

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      ++++|++.+. +..++....+ ..+.|.+... .....|..|+|+|.               .+|+.|+|+|++...   
T Consensus       125 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---  201 (354)
T TIGR02349       125 LTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE---  201 (354)
T ss_pred             EEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC---
Confidence            5888888775 3333332222 4556664333 33688999999985               479999999998644   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             .|..|.|+|.+
T Consensus       202 -------~C~~C~G~g~v  212 (354)
T TIGR02349       202 -------PCSTCKGKGRV  212 (354)
T ss_pred             -------CCCCCCCCcEe
Confidence                   79999999874

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.00081  Score=56.94  Aligned_cols=70  Identities=20%  Similarity=0.462  Sum_probs=47.7

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.           .+|+.|+|+|.+...       
T Consensus       128 vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~-------  200 (365)
T PRK14285        128 ISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISN-------  200 (365)
T ss_pred             EEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCC-------
Confidence            5777777665 3333332222 3455664332 34578999999985           479999999998654       


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                         +|..|.|+|.+
T Consensus       201 ---~C~~C~G~g~v  211 (365)
T PRK14285        201 ---PCKSCKGKGSL  211 (365)
T ss_pred             ---CCCCCCCCCEE
Confidence               89999999864

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.71  E-value=0.0011  Score=56.01  Aligned_cols=78  Identities=21%  Similarity=0.481  Sum_probs=50.9

Q ss_pred             CCCCCCC-ceeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEE
Q 032896           24 DSSSDSK-DHLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNA   88 (131)
Q Consensus        24 ~~~~~~~-~~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~   88 (131)
                      |+++... .|+++|++.+. +..++....+ ..+.|.+... .....|+.|+|+|.           .+|+.|+|+|++.
T Consensus       117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  196 (366)
T PRK14294        117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI  196 (366)
T ss_pred             CCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence            3444333 26788888775 3333332222 3455664332 33578999999996           4799999999886


Q ss_pred             EeecCCceecceecCCcccccee
Q 032896           89 VDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        89 ~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..          +|..|.|+|.+
T Consensus       197 ~~----------~C~~C~G~g~v  209 (366)
T PRK14294        197 VS----------PCKTCHGQGRV  209 (366)
T ss_pred             Cc----------CCCCCCCceEe
Confidence            44          79999998864

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.69  E-value=0.0012  Score=56.30  Aligned_cols=70  Identities=24%  Similarity=0.547  Sum_probs=47.4

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +...+....+ ..+.|.+... .....|..|+|+|.               .+|+.|+|+|.+...   
T Consensus       137 vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  213 (386)
T PRK14277        137 LTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITD---  213 (386)
T ss_pred             EEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccC---
Confidence            5677777664 3333332222 3456664433 34578999999986               369999999998654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|..|.|+|.+
T Consensus       214 -------~C~~C~G~g~v  224 (386)
T PRK14277        214 -------PCNKCGGTGRI  224 (386)
T ss_pred             -------CCCCCCCCcEE
Confidence                   79999998875

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.69  E-value=0.00087  Score=57.17  Aligned_cols=70  Identities=24%  Similarity=0.567  Sum_probs=47.9

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +..++..... ..+.|.+.+. .....|+.|+|+|.           .+|+.|+|+|.+...       
T Consensus       140 vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~-------  212 (391)
T PRK14284        140 LSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITD-------  212 (391)
T ss_pred             EEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCC-------
Confidence            5667777664 3333332222 4556665443 34578999999997           579999999988654       


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                         +|+.|.|.|.+
T Consensus       213 ---~C~~C~G~g~v  223 (391)
T PRK14284        213 ---PCSVCRGQGRI  223 (391)
T ss_pred             ---cCCCCCCccee
Confidence               79999998864

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.63  E-value=0.00097  Score=56.69  Aligned_cols=70  Identities=21%  Similarity=0.484  Sum_probs=46.3

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.               .+|+.|+|+|.+...   
T Consensus       128 vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  204 (380)
T PRK14276        128 LDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKE---  204 (380)
T ss_pred             EEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccC---
Confidence            5777887765 3333433222 3556664433 23568999999886               368999999988654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|..|.|.|.+
T Consensus       205 -------~C~~C~G~g~~  215 (380)
T PRK14276        205 -------PCQTCHGTGHE  215 (380)
T ss_pred             -------CCCCCCCceEE
Confidence                   78889888864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.62  E-value=0.0012  Score=56.04  Aligned_cols=70  Identities=21%  Similarity=0.490  Sum_probs=47.0

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcc-cccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGN-TKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~-~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|++. .-.....|+.|+|+|.               ..|+.|+|+|++...   
T Consensus       136 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  212 (386)
T PRK14289        136 LNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKK---  212 (386)
T ss_pred             EEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCc---
Confidence            6788888765 3333332222 34556543 3345688999999887               269999999988644   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             .|..|.|+|.+
T Consensus       213 -------~C~~C~G~g~v  223 (386)
T PRK14289        213 -------KCKKCGGEGIV  223 (386)
T ss_pred             -------CCCCCCCCcEE
Confidence                   79999998864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.46  E-value=0.0017  Score=55.23  Aligned_cols=70  Identities=23%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      |+++|++.+. +..++....+ ..+.|.+..- .....|+.|+|+|.               .+|+.|+|+|.+...   
T Consensus       130 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~---  206 (380)
T PRK14297        130 LTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIED---  206 (380)
T ss_pred             EEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCC---
Confidence            5777888765 3344433322 4566664432 23578999999985               479999999988654   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|..|.|+|.+
T Consensus       207 -------~C~~C~G~g~v  217 (380)
T PRK14297        207 -------PCNKCHGKGKV  217 (380)
T ss_pred             -------CCCCCCCCeEE
Confidence                   79999998853

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.38  E-value=0.0024  Score=54.15  Aligned_cols=78  Identities=21%  Similarity=0.420  Sum_probs=52.0

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGS   84 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~Gs   84 (131)
                      |+++..+. ++++|+|.+. +..++....+ -.+.|.+.+. .....|+.|+|+|.               ..|+.|+|.
T Consensus       116 g~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~  195 (374)
T PRK14293        116 GDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGT  195 (374)
T ss_pred             CCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcc
Confidence            44444443 6888998875 3344433222 3455654333 34578999999996               369999999


Q ss_pred             cEEEEeecCCceecceecCCcccccee
Q 032896           85 GVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        85 G~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      |.++..          +|..|.|+|.+
T Consensus       196 G~~~~~----------~C~~C~G~g~v  212 (374)
T PRK14293        196 GQVIED----------PCDACGGQGVK  212 (374)
T ss_pred             eeEecc----------CCCCCCCCccc
Confidence            998654          79999998864

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0048  Score=51.12  Aligned_cols=51  Identities=25%  Similarity=0.502  Sum_probs=42.7

Q ss_pred             eeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecccCCC
Q 032896           65 VVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCN  117 (131)
Q Consensus        65 ~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C~~C~  117 (131)
                      -.|..|.|.+...|..|+|+=++...  ........+|+.|+--|.++|+.|.
T Consensus       230 ~~C~~CGg~rFlpC~~C~GS~kv~~~--~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  230 GVCESCGGARFLPCSNCHGSCKVHEE--EEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CcCCCcCCcceEecCCCCCceeeeee--ccCCCcEEECcccCCCCceeCCccC
Confidence            68999999999999999999998763  1222345699999999999999995

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.27  E-value=0.0031  Score=53.27  Aligned_cols=78  Identities=17%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccc--cceeeCCCCCcCCc---------------ccCCCCCC
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK--RNSVVCADCDGNGA---------------VLCSQCKG   83 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~--~r~~~C~~C~GsG~---------------~~C~~C~G   83 (131)
                      |.++..+. |+++|++.+. +..++....+ -.++|.+...  .....|..|+|+|.               ..|+.|+|
T Consensus       112 g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G  191 (371)
T PRK14292        112 GDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRG  191 (371)
T ss_pred             CCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcc
Confidence            33443332 5788888765 3233332222 3455665433  23688999999986               36999999


Q ss_pred             ccEEEEeecCCceecceecCCcccccee
Q 032896           84 SGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        84 sG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      .|+....          +|..|.|+|.+
T Consensus       192 ~G~~~~~----------~C~~C~G~g~v  209 (371)
T PRK14292        192 EGQIITD----------PCTVCRGRGRT  209 (371)
T ss_pred             cceecCC----------CCCCCCCceEE
Confidence            9988643          89999998864

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.0032  Score=53.42  Aligned_cols=70  Identities=19%  Similarity=0.452  Sum_probs=46.9

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecC
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFG   93 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~   93 (131)
                      ++++|++.+. +..++..... ..+.|.+... .....|+.|+|+|.               .+|+.|+|+|.....   
T Consensus       128 vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---  204 (378)
T PRK14283        128 ITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEK---  204 (378)
T ss_pred             eeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCC---
Confidence            5888888775 3333322211 3455654332 34578999999987               359999999988644   


Q ss_pred             CceecceecCCcccccee
Q 032896           94 GQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        94 G~~~~~~~C~~C~G~G~~  111 (131)
                             +|..|.|+|.+
T Consensus       205 -------~C~~C~G~g~v  215 (378)
T PRK14283        205 -------PCSNCHGKGVV  215 (378)
T ss_pred             -------CCCCCCCceee
Confidence                   79999998864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.15  E-value=0.0045  Score=52.68  Aligned_cols=69  Identities=23%  Similarity=0.483  Sum_probs=48.0

Q ss_pred             eeecccCCCC-ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCcee
Q 032896           32 HLINDTPKTT-KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        32 ~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      |+++|++.+. +..++....+ ..+.|.+.+. .....|+.|+|+|.           .+|+.|+|+|.+ .        
T Consensus       138 vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-~--------  208 (382)
T PRK14291        138 ISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL-R--------  208 (382)
T ss_pred             EEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE-c--------
Confidence            5788888775 3344433332 4566665433 34678999999996           579999999953 2        


Q ss_pred             cceecCCcccccee
Q 032896           98 AGDSCWLCGGKRDM  111 (131)
Q Consensus        98 ~~~~C~~C~G~G~~  111 (131)
                        ..|..|.|.|.+
T Consensus       209 --~~C~~C~G~g~v  220 (382)
T PRK14291        209 --EPCSKCNGRGLV  220 (382)
T ss_pred             --cCCCCCCCCceE
Confidence              279999998864

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.0019  Score=53.41  Aligned_cols=68  Identities=29%  Similarity=0.512  Sum_probs=53.3

Q ss_pred             ecccC--cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceE
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGF  121 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~  121 (131)
                      |..|.  .+.+.....|.+|.|.|.      ..|..|.|.|.+....... +... +|..|.|++.+   .|..|.|.|.
T Consensus       151 A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~-~~~~c~~~~~~~~~~c~~~~g~~~  228 (288)
T KOG0715|consen  151 AVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDP-FILY-TCSYCLGRGLVLRDNCQACSGAGQ  228 (288)
T ss_pred             HhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCC-ccee-ecccccccceeccchHHHhhcchh
Confidence            44444  688888899999999998      7899999999765532222 2222 99999999998   6999999996


Q ss_pred             E
Q 032896          122 V  122 (131)
Q Consensus       122 v  122 (131)
                      +
T Consensus       229 v  229 (288)
T KOG0715|consen  229 V  229 (288)
T ss_pred             h
Confidence            6

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.73  E-value=0.0065  Score=47.67  Aligned_cols=13  Identities=31%  Similarity=0.999  Sum_probs=5.9

Q ss_pred             ccCCCCCCccEEE
Q 032896           76 VLCSQCKGSGVNA   88 (131)
Q Consensus        76 ~~C~~C~GsG~~~   88 (131)
                      ..|+.|+|+|.+.
T Consensus       100 ~~C~~C~G~G~~i  112 (186)
T TIGR02642       100 CKCPRCRGTGLIQ  112 (186)
T ss_pred             CcCCCCCCeeEEe
Confidence            3444444444443

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.65  E-value=0.0069  Score=47.53  Aligned_cols=31  Identities=35%  Similarity=0.697  Sum_probs=26.0

Q ss_pred             ccccceeeCCCCCcCCc-----ccCCCCCCccEEEE
Q 032896           59 NTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAV   89 (131)
Q Consensus        59 ~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~   89 (131)
                      ..+-+...|+.|+|+|.     ..|+.|+|+|++..
T Consensus        94 ~dy~~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~  129 (186)
T TIGR02642        94 NEVLNSCKCPRCRGTGLIQRRQRECDTCAGTGRFRP  129 (186)
T ss_pred             HHHHcCCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence            34556899999999998     25999999999876

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=94.67  E-value=0.041  Score=41.41  Aligned_cols=49  Identities=27%  Similarity=0.419  Sum_probs=33.1

Q ss_pred             eeeCCCCCcCCcccCCCCCCccEEEEeecCCceecceecCCccccceecc
Q 032896           64 SVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLC  113 (131)
Q Consensus        64 ~~~C~~C~GsG~~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~~C  113 (131)
                      ...|..|.|.+...|..|+|+=++...... ......+|+.|+--|.++|
T Consensus        99 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~-~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          99 GGVCEGCGGARFVPCSECNGSCKVFAENAT-AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CCCCCCCCCcCeEECCCCCCcceEEeccCc-ccccEEECCCCCccccccC
Confidence            456999999999999999999998764110 0112346666666555544

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.08  E-value=0.21  Score=42.50  Aligned_cols=80  Identities=20%  Similarity=0.417  Sum_probs=55.4

Q ss_pred             CCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc----------------ccCCCCCCc
Q 032896           24 DSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA----------------VLCSQCKGS   84 (131)
Q Consensus        24 ~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~----------------~~C~~C~Gs   84 (131)
                      |+++.... ++++|+|-+. +.-.+..-.+ ..+.|.+..-.....|..|.|+|.                ..|..|+|+
T Consensus       100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~  179 (337)
T KOG0712|consen  100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGS  179 (337)
T ss_pred             CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCc
Confidence            67777665 7888999873 2222222222 566666555555568999999998                678899998


Q ss_pred             cEEEEeecCCceecceecCCcccccee
Q 032896           85 GVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        85 G~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      |....        ....|+.|.|++.+
T Consensus       180 G~~~~--------~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  180 GETIS--------LKDRCKTCSGAKVV  198 (337)
T ss_pred             ccccc--------ccccCcccccchhh
Confidence            88732        23489999998875

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=89.71  E-value=0.31  Score=36.63  Aligned_cols=34  Identities=32%  Similarity=0.816  Sum_probs=26.7

Q ss_pred             ccCCCCCCccEEEEeecCCceecceecCCcccccee------------cccCCCCceEE
Q 032896           76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM------------LCGNCNGAGFV  122 (131)
Q Consensus        76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~------------~C~~C~G~G~v  122 (131)
                      ..|..|.|.+.+             +|..|+|+-++            +|+.|+-.|.+
T Consensus       100 ~~C~~Cgg~rfv-------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~  145 (147)
T cd03031         100 GVCEGCGGARFV-------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV  145 (147)
T ss_pred             CCCCCCCCcCeE-------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence            569999998887             78888886442            89999888865

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.04  E-value=0.88  Score=37.94  Aligned_cols=35  Identities=31%  Similarity=0.742  Sum_probs=25.9

Q ss_pred             ccCCCCCCccEEEEeecCCceecceecCCcccccee-----------cccCCCCceEEe
Q 032896           76 VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM-----------LCGNCNGAGFVG  123 (131)
Q Consensus        76 ~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~-----------~C~~C~G~G~v~  123 (131)
                      ..|..|.|.+.+             +|..|+|+-++           +|..|+-.|.+.
T Consensus       230 ~~C~~CGg~rFl-------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr  275 (281)
T KOG2824|consen  230 GVCESCGGARFL-------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR  275 (281)
T ss_pred             CcCCCcCCcceE-------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence            468888887777             67888776553           788888888764

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=83.48  E-value=0.86  Score=43.42  Aligned_cols=33  Identities=30%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             cCCCCCCccEEEEeecCCceecceecCCccccce
Q 032896           77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRD  110 (131)
Q Consensus        77 ~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~  110 (131)
                      .|+.|+|.|++.....+- .-...+|+.|+|++.
T Consensus       738 ~C~~C~G~G~~~~~~~f~-~~~~~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIEMHFL-PDVYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEEccCC-CCcccCCCCcCCcee
Confidence            488888888887752221 113557777777655

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 57  NGNTKR----NSVVCADCDGNGA-----VLCSQCKGSG--VNAVDFFGGQFKAGDSCWLC 105
            G T +      ++C +C+G G        C+ C G G             +    C +C
Sbjct: 27  KGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86

Query: 106 GGKRDML-----CGNCNGAGFV 122
            G  D++     C +CNG    
Sbjct: 87  HGTGDIIDPKDRCKSCNGKKVE 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 14  AETLKPRAHVDSSSDSKDHLINDTPKTTK--VNRLHSI-RVKAAANNGNTKRNSVVCADC 70
            E  +P        + +D L ND     K  V+RL    +++ A       +N ++    
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV- 158

Query: 71  DGNG-AVLCSQ-CKGSGVNAVDFFGGQFKAGDSCWLCGGKRDMLCGNCN 117
            G+G   +    C    V         F      WL     ++   NCN
Sbjct: 159 LGSGKTWVALDVCLSYKVQCK-MDFKIF------WL-----NL--KNCN 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.6
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.43
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.26
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.25
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.87
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.41
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.31
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.04
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.03
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.69
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	90.29

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4.1e-15  Score=103.84  Aligned_cols=83  Identities=31%  Similarity=0.636  Sum_probs=68.4

Q ss_pred             CCCCCC-ceeecccCCCCccccccceeeeecccCcccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCcee
Q 032896           25 SSSDSK-DHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFK   97 (131)
Q Consensus        25 ~~~~~~-~~~~~~~~~~~~~~~f~~~~vka~~g~~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~   97 (131)
                      +++..+ .|+++|++.+...              .+++++.+.|+.|+|+|.      .+|+.|+|+|++...  .|+|+
T Consensus         2 ~~~~~~l~vslee~~~G~~~--------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~--~G~~~   65 (104)
T 2ctt_A            2 SSGSSGMELTFNQAAKGVNK--------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN--TGPFV   65 (104)
T ss_dssp             CCCCCCCCCCCSSCCSSSCT--------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEE--ETTEE
T ss_pred             CceEEEEEEEHHHHcCCCEE--------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEE--eCCEE
Confidence            444444 3788888876532              256899999999999996      689999999998765  38888


Q ss_pred             cceecCCcccccee---cccCCCCceEEe
Q 032896           98 AGDSCWLCGGKRDM---LCGNCNGAGFVG  123 (131)
Q Consensus        98 ~~~~C~~C~G~G~~---~C~~C~G~G~v~  123 (131)
                      .+.+|+.|.|+|++   +|+.|+|.|++.
T Consensus        66 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           66 MRSTCRRCGGRGSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             EEEECSSSSSSSEECSSCCSSSSSCSEEC
T ss_pred             EEEECCcCCCcceECCCcCCCCCCeeEEE
Confidence            89999999999998   999999999873

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.43  E-value=1.7e-13  Score=90.73  Aligned_cols=64  Identities=31%  Similarity=0.673  Sum_probs=57.7

Q ss_pred             cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceEEe
Q 032896           58 GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFVG  123 (131)
Q Consensus        58 ~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v~  123 (131)
                      .+.+++.+.|+.|+|+|.      .+|+.|+|+|+++...  |+|+.+.+|+.|.|+|++   +|+.|+|.|++.
T Consensus         5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A            5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            577899999999999996      5899999999987643  888888999999999998   999999999874

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.26  E-value=2.2e-12  Score=102.33  Aligned_cols=66  Identities=27%  Similarity=0.687  Sum_probs=56.6

Q ss_pred             cccccceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCCc--eecceecCCcccccee-----cccCCCCceEEe
Q 032896           58 GNTKRNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ--FKAGDSCWLCGGKRDM-----LCGNCNGAGFVG  123 (131)
Q Consensus        58 ~~~~~r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G~--~~~~~~C~~C~G~G~~-----~C~~C~G~G~v~  123 (131)
                      .+++++.+.|+.|+|+|+     .+|+.|+|+|++...+..|+  ++.+.+|+.|+|+|++     +|+.|+|.|++.
T Consensus        32 ~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~  109 (248)
T 1nlt_A           32 KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN  109 (248)
T ss_dssp             EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence            366889999999999997     78999999999887655665  3578999999999964     899999999873

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.25  E-value=8.3e-07  Score=58.13  Aligned_cols=57  Identities=26%  Similarity=0.686  Sum_probs=42.1

Q ss_pred             cccceee-eecccCccc-ccceeeCCCCCcCCcc-----------cCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032896           45 RLHSIRV-KAAANNGNT-KRNSVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        45 ~f~~~~v-ka~~g~~~~-~~r~~~C~~C~GsG~~-----------~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      +|..... ..+.|.+.. ......|+.|+|+|.+           +|+.|+|+|.++.          .+|+.|.|.|.+
T Consensus         7 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~G~~   76 (79)
T 1exk_A            7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK----------DPCNKCHGHGRV   76 (79)
T ss_dssp             CCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS----------SBCGGGTTSSEE
T ss_pred             EcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC----------CcCCCCCCeEEE
Confidence            3444443 566666533 3445799999999972           7999999999853          389999999975

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.87  E-value=1.1e-05  Score=55.59  Aligned_cols=50  Identities=26%  Similarity=0.671  Sum_probs=38.0

Q ss_pred             eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032896           52 KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        52 ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..+.|.+.+. .....|+.|+|+|.           .+|+.|+|+|.++.          .+|+.|.|.|.+
T Consensus        32 ~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~----------~~C~~C~G~G~v   93 (104)
T 2ctt_A           32 ERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII----------SPCVVCRGAGQA   93 (104)
T ss_dssp             SSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS----------SCCSSSSSCSEE
T ss_pred             CCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC----------CcCCCCCCeeEE
Confidence            4555554332 34578999999995           47999999998864          389999999976

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.41  E-value=6.2e-05  Score=46.93  Aligned_cols=26  Identities=27%  Similarity=0.663  Sum_probs=20.0

Q ss_pred             ecceecCCcccccee---cccCCCCceEE
Q 032896           97 KAGDSCWLCGGKRDM---LCGNCNGAGFV  122 (131)
Q Consensus        97 ~~~~~C~~C~G~G~~---~C~~C~G~G~v  122 (131)
                      +.+.+|+.|.|+|++   +|+.|+|+|++
T Consensus         7 q~~~~C~~C~GsG~~i~~~C~~C~G~G~v   35 (53)
T 3lcz_A            7 DLETTCPNCNGSGREEPEPCPKCLGKGVI   35 (53)
T ss_dssp             HHEEECTTTTTSCEETTEECTTTTTSSEE
T ss_pred             ceeccCcCCcccccCCCCcCCCCCCcEEE
Confidence            356788888888885   78888888876

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.31  E-value=7.6e-05  Score=58.82  Aligned_cols=81  Identities=22%  Similarity=0.393  Sum_probs=58.5

Q ss_pred             cCCCCCCCc-eeecccCCCC-ccccccceee-eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCc
Q 032896           23 VDSSSDSKD-HLINDTPKTT-KVNRLHSIRV-KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGS   84 (131)
Q Consensus        23 ~~~~~~~~~-~~~~~~~~~~-~~~~f~~~~v-ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~Gs   84 (131)
                      .|.++..+. |+++|+|.+. +..++..... ..+.|.+.+-.....|+.|+|+|.               .+|+.|+|+
T Consensus        10 ~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~   89 (248)
T 1nlt_A           10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGT   89 (248)
T ss_dssp             BCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSS
T ss_pred             CCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCc
Confidence            455555554 7999999886 5566665444 566777554444589999999995               479999999


Q ss_pred             cEEEEeecCCceecceecCCcccccee
Q 032896           85 GVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        85 G~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      |.+..        ...+|+.|.|.|.+
T Consensus        90 G~~i~--------~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           90 GDIID--------PKDRCKSCNGKKVE  108 (248)
T ss_dssp             SSCCC--------TTSBCSSSTTSCEE
T ss_pred             CEEec--------cCCCCcccCCCceE
Confidence            98762        13489999999874

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.04  E-value=0.00041  Score=43.14  Aligned_cols=28  Identities=32%  Similarity=0.826  Sum_probs=23.4

Q ss_pred             ceeeCCCCCcCCc---ccCCCCCCccEEEEe
Q 032896           63 NSVVCADCDGNGA---VLCSQCKGSGVNAVD   90 (131)
Q Consensus        63 r~~~C~~C~GsG~---~~C~~C~GsG~~~~~   90 (131)
                      ...+|++|+|+|.   ..|+.|+|+|.+...
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            4678999999998   789999999988653

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.03  E-value=0.00042  Score=43.07  Aligned_cols=27  Identities=33%  Similarity=0.817  Sum_probs=21.6

Q ss_pred             ceeeCCCCCcCCc---ccCCCCCCccEEEE
Q 032896           63 NSVVCADCDGNGA---VLCSQCKGSGVNAV   89 (131)
Q Consensus        63 r~~~C~~C~GsG~---~~C~~C~GsG~~~~   89 (131)
                      ....|+.|+|+|.   .+|+.|+|+|++..
T Consensus         8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~   37 (53)
T 2bx9_A            8 LEVACPKCERAGEIEGTPCPACSGKGVILT   37 (53)
T ss_dssp             HEEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred             ccccCCCCcceeccCCCCCccCCCCccEEE
Confidence            3568888888887   67888888888765

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.69  E-value=0.00087  Score=41.63  Aligned_cols=24  Identities=25%  Similarity=0.708  Sum_probs=14.5

Q ss_pred             ceecCCcccccee---cccCCCCceEE
Q 032896           99 GDSCWLCGGKRDM---LCGNCNGAGFV  122 (131)
Q Consensus        99 ~~~C~~C~G~G~~---~C~~C~G~G~v  122 (131)
                      +.+|+.|+|+|.+   +|+.|+|.|++
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v   35 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVI   35 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEE
T ss_pred             cccCCCCcceeccCCCCCccCCCCccE
Confidence            3456666666654   66666666665

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=90.29  E-value=0.0093  Score=53.35  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             ecccC--cccccceeeCCCCCcCCc---------ccCCCCCCccEEEEe----------ecCCce-ecceecCCccccce
Q 032896           53 AAANN--GNTKRNSVVCADCDGNGA---------VLCSQCKGSGVNAVD----------FFGGQF-KAGDSCWLCGGKRD  110 (131)
Q Consensus        53 a~~g~--~~~~~r~~~C~~C~GsG~---------~~C~~C~GsG~~~~~----------~~~G~~-~~~~~C~~C~G~G~  110 (131)
                      |+.|.  ++++.+...|..|+|+|.         +.|+.|+|+......          ...|.| +....|..|...+.
T Consensus       178 A~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~  257 (669)
T 3pmq_A          178 SGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP  257 (669)
T ss_dssp             SSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred             hhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence            45555  689999999999999975         679999999422111          012332 45678999998775


Q ss_pred             --------------ecccCCCCce
Q 032896          111 --------------MLCGNCNGAG  120 (131)
Q Consensus       111 --------------~~C~~C~G~G  120 (131)
                                    ..|..|+...
T Consensus       258 ~la~~~~w~~~ps~~aC~sCH~~~  281 (669)
T 3pmq_A          258 DLADRQNWYRVPTMEACGACHTQI  281 (669)
T ss_dssp             TCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred             ccccccccccCCchhhhhhccCCc
Confidence                          1788888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	0.001

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 65  VVCADCDGNGA-----VLCSQCKGSGVNAV--DFFGGQFKAGDSCWLCGGKRDML----- 112
           ++C +C+G G        C+ C G G+  V         +    C +C G  D++     
Sbjct: 3   ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62

Query: 113 CGNCNGAGFV 122
           C +CNG    
Sbjct: 63  CKSCNGKKVE 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.52
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.42
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.34
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.93
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.67
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	86.01

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.8e-15  Score=97.47  Aligned_cols=64  Identities=31%  Similarity=0.681  Sum_probs=57.7

Q ss_pred             cccccceeeCCCCCcCCc------ccCCCCCCccEEEEeecCCceecceecCCcccccee---cccCCCCceEEe
Q 032896           58 GNTKRNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFVG  123 (131)
Q Consensus        58 ~~~~~r~~~C~~C~GsG~------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v~  123 (131)
                      .|+|++++.|+.|+|+|.      ..|+.|+|+|++...  .|+++++++|+.|+|+|++   +|+.|+|+|++.
T Consensus         5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~--~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   77 (79)
T d1exka_           5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMR--QGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEE--ETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEe--cccceeeEECcccCcceeECCCCCCCCCCceEee
Confidence            688999999999999996      679999999988654  5788888999999999997   999999999874

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=1.3e-13  Score=90.05  Aligned_cols=61  Identities=30%  Similarity=0.763  Sum_probs=52.3

Q ss_pred             ceeeCCCCCcCCc-----ccCCCCCCccEEEEeecCC--ceecceecCCcccccee-----cccCCCCceEEe
Q 032896           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGG--QFKAGDSCWLCGGKRDM-----LCGNCNGAGFVG  123 (131)
Q Consensus        63 r~~~C~~C~GsG~-----~~C~~C~GsG~~~~~~~~G--~~~~~~~C~~C~G~G~~-----~C~~C~G~G~v~  123 (131)
                      |.++|+.|+|+|+     .+|+.|+|+|+++..+..+  +++++.+|+.|.|+|++     +|+.|+|+|++.
T Consensus         1 r~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             CccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            5789999999997     6799999999998855454  45678899999999976     799999999874

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.8e-07  Score=60.65  Aligned_cols=60  Identities=25%  Similarity=0.619  Sum_probs=46.2

Q ss_pred             ccccccceee-eecccCcccc-cceeeCCCCCcCCc-----------ccCCCCCCccEEEEeecCCceecceecCCcccc
Q 032896           42 KVNRLHSIRV-KAAANNGNTK-RNSVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGK  108 (131)
Q Consensus        42 ~~~~f~~~~v-ka~~g~~~~~-~r~~~C~~C~GsG~-----------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~  108 (131)
                      +..+|....+ ..+.|.+.+- .....|+.|+|+|.           .+|+.|+|+|+++..          +|..|.|+
T Consensus         4 k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~----------~C~~C~G~   73 (79)
T d1exka_           4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKD----------PCNKCHGH   73 (79)
T ss_dssp             TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSS----------BCGGGTTS
T ss_pred             EEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCC----------CCCCCCCc
Confidence            3455555555 6777776443 34578999999997           679999999998643          89999999


Q ss_pred             cee
Q 032896          109 RDM  111 (131)
Q Consensus       109 G~~  111 (131)
                      |.+
T Consensus        74 G~v   76 (79)
T d1exka_          74 GRV   76 (79)
T ss_dssp             SEE
T ss_pred             eEe
Confidence            976

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=1.8e-06  Score=55.23  Aligned_cols=52  Identities=31%  Similarity=0.658  Sum_probs=38.3

Q ss_pred             eecccCcccccceeeCCCCCcCCc---------------ccCCCCCCccEEEEeecCCceecceecCCcccccee
Q 032896           52 KAAANNGNTKRNSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGGKRDM  111 (131)
Q Consensus        52 ka~~g~~~~~~r~~~C~~C~GsG~---------------~~C~~C~GsG~~~~~~~~G~~~~~~~C~~C~G~G~~  111 (131)
                      ..++|.+........|+.|+|+|.               .+|+.|+|+|.++.        ...+|..|.|+|.+
T Consensus         6 ~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--------~~~~C~~C~G~g~v   72 (74)
T d1nlta3           6 KECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--------PKDRCKSCNGKKVE   72 (74)
T ss_dssp             TTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--------TTSBCSSSTTSCEE
T ss_pred             cCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC--------CCCCCCCCCCeeEe
Confidence            455666544334567999999996               57999999998753        12489999999865

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.67  E-value=1.8e-05  Score=51.13  Aligned_cols=57  Identities=18%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             eCCCCCcCCc---------ccCCCCCCccEEEEe--ecCCceecceecCCcccccee---cccCCCCceEE
Q 032896           66 VCADCDGNGA---------VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGGKRDM---LCGNCNGAGFV  122 (131)
Q Consensus        66 ~C~~C~GsG~---------~~C~~C~GsG~~~~~--~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~G~v  122 (131)
                      .|.+|+|.|.         ..|..|+|+|.....  ...+.......|..|.|.+..   .|..|.+.|++
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            6999999875         469999999976552  223445567888999888875   89999999864

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=86.01  E-value=0.023  Score=35.65  Aligned_cols=10  Identities=20%  Similarity=0.534  Sum_probs=6.5

Q ss_pred             ecCCccccce
Q 032896          101 SCWLCGGKRD  110 (131)
Q Consensus       101 ~C~~C~G~G~  110 (131)
                      .|..|.+.|+
T Consensus        73 ~C~~CH~~gr   82 (90)
T d1m1qa_          73 TCESCHDDGR   82 (90)
T ss_dssp             CSTTTCSSCC
T ss_pred             ccccccCCCc
Confidence            5777766654