BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032897
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
           Bacillus Subtilis At 2.5 Angstrom
          Length = 208

 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 88  GSVLVKIVDLCPAGCQATIDLSQEAFSQIANPDAGKIKIEFN 129
           G   V + DL P G +  +DLS  AF +I N   GKI I++ 
Sbjct: 63  GKTTVYVTDLYPEGARGALDLSPNAFRKIGNXKDGKINIKWR 104


>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
           Subtilis At 1.9a Resolution
 pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellohexaose
 pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellohexaose
 pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Mixed-Linkage Glucan
 pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Mixed-Linkage Glucan
 pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellotetraose
 pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Cellotetraose
 pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Hemithiocellodextrin
 pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
           Complex With Hemithiocellodextrin
          Length = 208

 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 88  GSVLVKIVDLCPAGCQATIDLSQEAFSQIANPDAGKIKIEFN 129
           G   V + DL P G +  +DLS  AF +I N   GKI I++ 
Sbjct: 63  GKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWR 104


>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
           Complex
 pdb|3VX8|C Chain C, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
           Complex
          Length = 292

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 83  HPCRGGSVLVKIVD-LCPAGCQATID 107
           HPCR G+V+ KI+D L   G +  +D
Sbjct: 235 HPCRHGAVMKKIIDVLMSRGVEPEVD 260


>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
 pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
 pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
           Rubidium
          Length = 1034

 Score = 25.4 bits (54), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 4   GTKVLVITTMAICLISSAAYASEGTAT 30
           G + L+    AICLI+ A  ASEG  T
Sbjct: 109 GLQCLMWVAAAICLIAFAIQASEGDLT 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,922,140
Number of Sequences: 62578
Number of extensions: 148205
Number of successful extensions: 235
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)