Query 032897
Match_columns 131
No_of_seqs 151 out of 1100
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 2.7E-38 5.9E-43 225.4 13.1 123 6-130 3-125 (125)
2 PLN03023 Expansin-like B1; Pro 100.0 4.9E-30 1.1E-34 200.7 12.1 107 17-131 18-139 (247)
3 PLN00193 expansin-A; Provision 100.0 1.6E-29 3.4E-34 198.8 12.9 109 20-131 26-156 (256)
4 PLN00050 expansin A; Provision 100.0 1.1E-29 2.5E-34 198.8 10.8 106 21-131 22-148 (247)
5 smart00837 DPBB_1 Rare lipopro 99.9 3.2E-23 7E-28 139.6 6.7 73 51-128 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.9 5.4E-23 1.2E-27 135.1 7.6 75 51-128 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.5 2.6E-13 5.6E-18 101.6 8.6 95 25-131 31-130 (232)
8 COG0797 RlpA Lipoproteins [Cel 99.4 2.9E-12 6.3E-17 99.5 10.5 96 20-131 78-175 (233)
9 TIGR00413 rlpA rare lipoprotei 99.4 6E-12 1.3E-16 96.3 10.6 88 27-130 1-90 (208)
10 PRK10672 rare lipoprotein A; P 99.2 3.6E-10 7.8E-15 92.8 12.2 90 24-129 78-169 (361)
11 PF00967 Barwin: Barwin family 99.1 9.8E-11 2.1E-15 81.9 4.6 58 61-131 56-117 (119)
12 PF07249 Cerato-platanin: Cera 98.9 2E-08 4.3E-13 71.2 8.6 66 49-131 43-112 (119)
13 PF02015 Glyco_hydro_45: Glyco 94.0 0.06 1.3E-06 41.4 3.3 53 51-110 70-122 (201)
14 COG5216 Uncharacterized conser 65.2 3.4 7.3E-05 26.0 1.0 33 57-103 19-51 (67)
15 PF07172 GRP: Glycine rich pro 57.7 7.2 0.00016 26.4 1.6 12 3-14 1-12 (95)
16 PRK15205 long polar fimbrial p 49.4 16 0.00036 26.8 2.5 17 25-42 28-44 (176)
17 KOG2923 Uncharacterized conser 49.2 8.2 0.00018 24.6 0.8 38 63-114 25-64 (67)
18 PRK15241 putative fimbrial pro 46.7 25 0.00053 26.6 3.2 39 1-41 1-39 (188)
19 PRK01470 tatA twin arginine tr 46.5 24 0.00053 21.2 2.5 21 1-21 1-21 (51)
20 PRK00191 tatA twin arginine tr 46.2 23 0.0005 23.7 2.6 21 1-21 1-21 (84)
21 PRK08061 rpsN 30S ribosomal pr 42.8 16 0.00035 22.9 1.4 37 91-128 17-61 (61)
22 PRK15239 putative fimbrial pro 41.2 27 0.00058 26.4 2.6 36 6-42 3-39 (197)
23 COG3630 OadG Na+-transporting 37.8 19 0.00041 24.0 1.2 17 1-17 16-32 (84)
24 PRK15300 fimbrial protein StiA 37.5 28 0.00062 25.5 2.2 39 1-41 1-42 (179)
25 PRK15307 major fimbrial protei 37.4 36 0.00078 25.6 2.8 16 25-41 27-42 (201)
26 PRK15262 putative fimbrial pro 34.6 40 0.00088 25.4 2.7 36 5-41 6-41 (197)
27 PRK02919 oxaloacetate decarbox 34.5 27 0.00059 23.0 1.5 16 1-16 16-31 (82)
28 PF08139 LPAM_1: Prokaryotic m 33.2 63 0.0014 16.7 2.4 16 6-21 8-23 (25)
29 PRK12750 cpxP periplasmic repr 32.8 33 0.00072 25.5 1.9 20 1-21 1-20 (170)
30 PRK15194 type-1 fimbrial prote 31.0 52 0.0011 24.2 2.7 17 25-42 31-47 (185)
31 TIGR02645 ARCH_P_rylase putati 30.9 2E+02 0.0044 25.2 6.6 53 62-126 26-78 (493)
32 PRK15191 fimbrial protein BcfF 30.8 26 0.00057 25.7 1.1 35 7-42 3-37 (172)
33 PF13719 zinc_ribbon_5: zinc-r 28.2 48 0.001 18.2 1.7 15 97-112 4-18 (37)
34 PF15240 Pro-rich: Proline-ric 26.8 47 0.001 25.2 1.8 25 9-34 4-28 (179)
35 PF13462 Thioredoxin_4: Thiore 26.4 28 0.00061 24.1 0.5 42 86-131 11-54 (162)
36 COG0199 RpsN Ribosomal protein 24.6 40 0.00088 21.1 1.0 39 89-128 15-61 (61)
37 PF11023 DUF2614: Protein of u 24.4 32 0.0007 24.2 0.5 39 62-110 61-99 (114)
38 PRK15214 fimbrial protein PefA 23.7 84 0.0018 23.4 2.7 15 27-42 23-37 (172)
39 cd03023 DsbA_Com1_like DsbA fa 23.1 1.2E+02 0.0026 20.4 3.3 39 86-130 4-43 (154)
40 PF04277 OAD_gamma: Oxaloaceta 23.0 48 0.001 20.9 1.2 16 2-17 11-26 (79)
41 PRK00442 tatA twin arginine tr 22.8 93 0.002 21.1 2.5 21 1-21 1-22 (92)
42 KOG4517 Uncharacterized conser 21.6 95 0.0021 21.9 2.4 27 87-117 59-86 (117)
43 PRK13528 outer membrane recept 20.6 62 0.0014 28.6 1.7 19 1-19 1-19 (727)
44 PF13605 DUF4141: Domain of un 20.5 77 0.0017 19.4 1.6 26 6-34 2-27 (55)
45 PF08107 Antimicrobial12: Pleu 20.2 34 0.00074 19.9 0.0 23 3-25 1-23 (42)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=100.00 E-value=2.7e-38 Score=225.41 Aligned_cols=123 Identities=56% Similarity=0.953 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhhccCceeeEEEEEeCCCCCCCCCCCCcCCCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCc
Q 032897 6 KVLVITTMAICLISSAAYASEGTATFYTPPYVPSACNGYKNDGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPC 85 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gaC~~~~~~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c 85 (131)
|+++|++.+++++++.+....|+||||++ ..++|||++..++.++||+|+.+|++|+.||+||||+|.+..+.. |..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~G~AT~Y~~-~~~gAC~~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~-~~~c 80 (125)
T PLN03024 3 KRILIFSTVLVFLFSVSYATPGIATFYTS-YTPSACYRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAV-PHPC 80 (125)
T ss_pred eeeHHHHHHHHHHhhhhcccceEEEEeCC-CCCccccCCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccc-cccc
Confidence 67889999999999999999999999986 467899887778999999999999999999999999997643323 5689
Q ss_pred cCCeEEEEEeecCCCCCCCceEcCHHHHHhhcCCCCceEEEEEEE
Q 032897 86 RGGSVLVKIVDLCPAGCQATIDLSQEAFSQIANPDAGKIKIEFNQ 130 (131)
Q Consensus 86 ~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~~~~G~v~v~w~~ 130 (131)
+|++|+|+|+|+||++|++|||||++||++||+++.|+++|+|.+
T Consensus 81 ~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 81 TGKSVTVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 999999999999996699999999999999999999999999975
No 2
>PLN03023 Expansin-like B1; Provisional
Probab=99.97 E-value=4.9e-30 Score=200.75 Aligned_cols=107 Identities=27% Similarity=0.545 Sum_probs=93.5
Q ss_pred HhhccCceeeEEEEEeCCCC----CCCCC-CCCcC---CCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCC
Q 032897 17 LISSAAYASEGTATFYTPPY----VPSAC-NGYKN---DGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGG 88 (131)
Q Consensus 17 ~~~~~a~~~~G~aT~Y~~~~----~~gaC-~~~~~---~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~ 88 (131)
.....++|.+++||||++++ .+||| |++.. ++.++||+| .+|++|..||+||||+|.+ |+.|.++
T Consensus 18 ~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~------~~~C~~~ 90 (247)
T PLN03023 18 LLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA------PNLCSDD 90 (247)
T ss_pred hhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC------CCccCCC
Confidence 34445689999999999876 47899 77643 678899999 9999999999999999964 6789988
Q ss_pred eEEEEEeecCCCCCCCceEcCHHHHHhhcCC-------CCceEEEEEEEC
Q 032897 89 SVLVKIVDLCPAGCQATIDLSQEAFSQIANP-------DAGKIKIEFNQA 131 (131)
Q Consensus 89 sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~~-------~~G~v~v~w~~~ 131 (131)
+|+|+|||.|| ++..|||||..||.+||.+ ..|+|+|+||||
T Consensus 91 ~v~V~iTd~~~-~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRV 139 (247)
T PLN03023 91 GVNVVVTDYGE-GDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRI 139 (247)
T ss_pred CeEEEEEeCCC-CCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEE
Confidence 99999999999 8789999999999999973 569999999996
No 3
>PLN00193 expansin-A; Provisional
Probab=99.96 E-value=1.6e-29 Score=198.79 Aligned_cols=109 Identities=28% Similarity=0.545 Sum_probs=92.7
Q ss_pred ccCceeeEEEEEeCCCC----CCCCC-CCCcC---CCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCcc-CCeE
Q 032897 20 SAAYASEGTATFYTPPY----VPSAC-NGYKN---DGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCR-GGSV 90 (131)
Q Consensus 20 ~~a~~~~G~aT~Y~~~~----~~gaC-~~~~~---~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~-g~sv 90 (131)
+.++|.+++||||+.++ .+||| |++.. ++.++||+|+.+|++|..||+||||+|.... . |+.|. |++|
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~--~-~~~C~~g~sV 102 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQA--D-SRWCIKGASV 102 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCC--C-CccccCCCeE
Confidence 34579999999999754 36999 77543 6789999999999999999999999995321 2 66784 6799
Q ss_pred EEEEeecCCCC----------CC---CceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 91 LVKIVDLCPAG----------CQ---ATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 91 ~v~V~D~Cp~~----------C~---~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
+|+|||+||++ |. .|||||+.||.+||....|+++|+||||
T Consensus 103 ~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRV 156 (256)
T PLN00193 103 TITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRV 156 (256)
T ss_pred EEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEe
Confidence 99999999952 85 7999999999999999999999999996
No 4
>PLN00050 expansin A; Provisional
Probab=99.96 E-value=1.1e-29 Score=198.77 Aligned_cols=106 Identities=32% Similarity=0.586 Sum_probs=92.8
Q ss_pred cCceeeEEEEEeCCCC----CCCCC-CCCcC---CCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEE
Q 032897 21 AAYASEGTATFYTPPY----VPSAC-NGYKN---DGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLV 92 (131)
Q Consensus 21 ~a~~~~G~aT~Y~~~~----~~gaC-~~~~~---~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v 92 (131)
..+|..++||||+.++ .+||| |++.. ++.++||+|+.+|++|..||+||||+|.+ . +..|.+++|+|
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~----~-~~~C~~gsV~V 96 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVN----D-NIWCLPGSIII 96 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCC----C-CcccCCCcEEE
Confidence 3589999999999764 36999 77643 68899999999999999999999999965 2 45788889999
Q ss_pred EEeecCCCC----------CC---CceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 93 KIVDLCPAG----------CQ---ATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 93 ~V~D~Cp~~----------C~---~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
+|||+||++ |. .|||||+.||.+||....|+++|+||||
T Consensus 97 ~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRV 148 (247)
T PLN00050 97 TATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRV 148 (247)
T ss_pred EEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEe
Confidence 999999952 74 8999999999999999999999999996
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.89 E-value=3.2e-23 Score=139.56 Aligned_cols=73 Identities=38% Similarity=0.783 Sum_probs=64.8
Q ss_pred EEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccC-CeEEEEEeecCCCC----------CC---CceEcCHHHHHhh
Q 032897 51 IAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRG-GSVLVKIVDLCPAG----------CQ---ATIDLSQEAFSQI 116 (131)
Q Consensus 51 ~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g-~sv~v~V~D~Cp~~----------C~---~~lDLS~~AF~~l 116 (131)
+||+|+.+|++|..||+||||+|.+ . |..|.+ ++|+|+|+|+||.+ |. .|||||+.||.+|
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~----~-~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~i 75 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD----S-PKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKI 75 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC----C-CCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHH
Confidence 4899999999999999999999964 2 667864 69999999999953 63 7999999999999
Q ss_pred cCCCCceEEEEE
Q 032897 117 ANPDAGKIKIEF 128 (131)
Q Consensus 117 a~~~~G~v~v~w 128 (131)
|..+.|+|+|+|
T Consensus 76 A~~~~Gvi~v~y 87 (87)
T smart00837 76 AQYKAGIVPVKY 87 (87)
T ss_pred hhhcCCEEeeEC
Confidence 999999999997
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.89 E-value=5.4e-23 Score=135.11 Aligned_cols=75 Identities=41% Similarity=0.803 Sum_probs=61.0
Q ss_pred EEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccC--CeEEEEEeecCCCCCC-CceEcCHHHHHhhcCCCCceEEEE
Q 032897 51 IAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRG--GSVLVKIVDLCPAGCQ-ATIDLSQEAFSQIANPDAGKIKIE 127 (131)
Q Consensus 51 ~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g--~sv~v~V~D~Cp~~C~-~~lDLS~~AF~~la~~~~G~v~v~ 127 (131)
+||++..+|++|..||+|+++++....+.. +. |.. ++|+|+|+|+|| +|+ +|||||+.||++|++++.|+++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~-~~-~~~~~ksV~v~V~D~Cp-~~~~~~lDLS~~aF~~la~~~~G~i~V~ 77 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASAT-GT-CKVGNKSVTVTVVDRCP-GCPPNHLDLSPAAFKALADPDAGVIPVE 77 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT----BESEECEEEEEEEEE-T-TSSSSEEEEEHHHHHHTBSTTCSSEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCcc-ce-EEecCCeEEEEEEccCC-CCcCCEEEeCHHHHHHhCCCCceEEEEE
Confidence 689999999999999999999995432111 12 665 999999999999 899 999999999999999999999999
Q ss_pred E
Q 032897 128 F 128 (131)
Q Consensus 128 w 128 (131)
|
T Consensus 78 w 78 (78)
T PF03330_consen 78 W 78 (78)
T ss_dssp E
T ss_pred C
Confidence 9
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2.6e-13 Score=101.62 Aligned_cols=95 Identities=33% Similarity=0.486 Sum_probs=80.6
Q ss_pred eeEEEEEeCCCCCCCCC-CCCcCCCceEEEeccccccCC----CCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCC
Q 032897 25 SEGTATFYTPPYVPSAC-NGYKNDGVMIAAASYAIWNNG----AVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCP 99 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC-~~~~~~~~~~aAls~~~~~~g----~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp 99 (131)
++|.|||-+..+.+||= ..+.+.+.-+.|+++.+-|-| +.-|..+||. + | + .+.+|.|+|+-|
T Consensus 31 f~G~ATyTgsGYsGGAflLDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq-------G-P---K-G~TTVYVTDlYP 98 (232)
T COG4305 31 FEGYATYTGSGYSGGAFLLDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ-------G-P---K-GKTTVYVTDLYP 98 (232)
T ss_pred cceeEEEecccccCceEEecCcCCcceeeecCHHHcccCCchhhhccceEEEE-------C-C---C-CceEEEEecccc
Confidence 79999999998888888 566667777899998877654 5789999998 4 5 3 467999999999
Q ss_pred CCCCCceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 100 AGCQATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 100 ~~C~~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
++-.+.||||+.||.+|+++.+|+|+|+||.+
T Consensus 99 egasGaLDLSpNAFakIGnm~qGrIpvqWrvv 130 (232)
T COG4305 99 EGASGALDLSPNAFAKIGNMKQGRIPVQWRVV 130 (232)
T ss_pred cccccccccChHHHhhhcchhcCccceeEEEe
Confidence 44449999999999999999999999999964
No 8
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=2.9e-12 Score=99.49 Aligned_cols=96 Identities=25% Similarity=0.289 Sum_probs=76.8
Q ss_pred ccCceeeEEEEEeCCCCCCCCC-CCC-cCCCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeec
Q 032897 20 SAAYASEGTATFYTPPYVPSAC-NGY-KNDGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDL 97 (131)
Q Consensus 20 ~~a~~~~G~aT~Y~~~~~~gaC-~~~-~~~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~ 97 (131)
+.+....|.|+||+....+.-- .|. .....++||..+-.| |..++||+.+ ||++|+|+|.||
T Consensus 78 ~~~~~~~G~ASwYg~~fhgr~TA~Ge~~n~~~~tAAH~TLP~------~t~v~VtNl~----------NgrsvvVRINDR 141 (233)
T COG0797 78 PASFEQVGYASWYGEKFHGRKTANGERYDMNALTAAHKTLPL------PTYVRVTNLD----------NGRSVVVRINDR 141 (233)
T ss_pred cccccccceeeeeccccCCccccCcccccccccccccccCCC------CCEEEEEEcc----------CCcEEEEEEeCC
Confidence 4455679999999976655444 344 335677888776555 8999999654 899999999999
Q ss_pred CCCCCCCceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 98 CPAGCQATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 98 Cp~~C~~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
+|+.-++.||||.+|+++|+....|+.+|+.+++
T Consensus 142 GPf~~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l 175 (233)
T COG0797 142 GPFVSGRIIDLSKAAADKLGMIRSGVAKVRIEVL 175 (233)
T ss_pred CCCCCCcEeEcCHHHHHHhCCccCceEEEEEEEe
Confidence 9976679999999999999999999988877653
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.37 E-value=6e-12 Score=96.31 Aligned_cols=88 Identities=26% Similarity=0.277 Sum_probs=71.3
Q ss_pred EEEEEeCCCCC--CCCCCCCcCCCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCC
Q 032897 27 GTATFYTPPYV--PSACNGYKNDGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQA 104 (131)
Q Consensus 27 G~aT~Y~~~~~--~gaC~~~~~~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~ 104 (131)
|.|+||++... ..|.|.......|+||..+- +.|..++|++.. +|++|+|+|+|++|..-.+
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y~~~~~tAAHktL------PlgT~V~VtNl~----------ngrsviVrVnDRGPf~~gR 64 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVYNMKALTAAHKTL------PFNTYVKVTNLH----------NNRSVIVRINDRGPFSDDR 64 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeecCCCccccccccC------CCCCEEEEEECC----------CCCEEEEEEeCCCCCCCCC
Confidence 68999998654 35555555566788887654 459999999643 7999999999999954459
Q ss_pred ceEcCHHHHHhhcCCCCceEEEEEEE
Q 032897 105 TIDLSQEAFSQIANPDAGKIKIEFNQ 130 (131)
Q Consensus 105 ~lDLS~~AF~~la~~~~G~v~v~w~~ 130 (131)
.||||++|+++|+..+.|+.+|+.+.
T Consensus 65 iIDLS~aAA~~Lg~~~~G~a~V~vev 90 (208)
T TIGR00413 65 IIDLSHAAAREIGLISRGVGQVRIEV 90 (208)
T ss_pred EEECCHHHHHHcCCCcCceEEEEEEE
Confidence 99999999999999999999988764
No 10
>PRK10672 rare lipoprotein A; Provisional
Probab=99.19 E-value=3.6e-10 Score=92.79 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=71.4
Q ss_pred eeeEEEEEeCCCCCCCCC--CCCcCCCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCC
Q 032897 24 ASEGTATFYTPPYVPSAC--NGYKNDGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAG 101 (131)
Q Consensus 24 ~~~G~aT~Y~~~~~~gaC--~~~~~~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~ 101 (131)
...|.|+||+....+..- |.......|+||..+-- .|..++||+.. ||++|+|+|.||+|+.
T Consensus 78 ~~~G~ASwYg~~f~G~~TA~Ge~~~~~~~tAAH~tLP------lps~vrVtNl~----------ngrsvvVrVnDRGP~~ 141 (361)
T PRK10672 78 SQAGLAAIYDAEAGSNLTASGERFDPNALTAAHPTLP------IPSYVRVTNLA----------NGRMIVVRINDRGPYG 141 (361)
T ss_pred ceEEEEEEeCCccCCCcCcCceeecCCcCeeeccCCC------CCCEEEEEECC----------CCcEEEEEEeCCCCCC
Confidence 358999999987654433 44444567888877544 49999999654 8999999999999965
Q ss_pred CCCceEcCHHHHHhhcCCCCceEEEEEE
Q 032897 102 CQATIDLSQEAFSQIANPDAGKIKIEFN 129 (131)
Q Consensus 102 C~~~lDLS~~AF~~la~~~~G~v~v~w~ 129 (131)
-.+.||||++|+++|+....++++|+.-
T Consensus 142 ~gRiiDLS~aAA~~Lg~~~~~~V~ve~i 169 (361)
T PRK10672 142 PGRVIDLSRAAADRLNTSNNTKVRIDPI 169 (361)
T ss_pred CCCeeEcCHHHHHHhCCCCCceEEEEEE
Confidence 4599999999999999888888888753
No 11
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.11 E-value=9.8e-11 Score=81.94 Aligned_cols=58 Identities=31% Similarity=0.599 Sum_probs=42.7
Q ss_pred CCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcCHHHHHhhcCC----CCceEEEEEEEC
Q 032897 61 NGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLSQEAFSQIANP----DAGKIKIEFNQA 131 (131)
Q Consensus 61 ~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~~----~~G~v~v~w~~~ 131 (131)
....||+|++||++. +|.+++|+|||+|+. ++|||.+.+|++|-.. ..|.+.|+|+.|
T Consensus 56 gq~~CGkClrVTNt~----------tga~~~~RIVDqCsn---GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV 117 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----------TGAQVTVRIVDQCSN---GGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFV 117 (119)
T ss_dssp SGGGTT-EEEEE-TT----------T--EEEEEEEEE-SS---SSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE
T ss_pred CcccccceEEEEecC----------CCcEEEEEEEEcCCC---CCcccChhHHhhhccCCcccccceEEEEEEEE
Confidence 346899999999543 689999999999993 5999999999999532 578999999864
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.86 E-value=2e-08 Score=71.19 Aligned_cols=66 Identities=23% Similarity=0.486 Sum_probs=49.6
Q ss_pred ceEEEecc-ccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcCHHHHHhhcC---CCCceE
Q 032897 49 VMIAAASY-AIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLSQEAFSQIAN---PDAGKI 124 (131)
Q Consensus 49 ~~~aAls~-~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~---~~~G~v 124 (131)
-.|.+... .-|+ .+.||.|+||++ +|+++.+..+|.-+ ..|+++++||+.|.+ ...|+|
T Consensus 43 p~IGg~~~V~gWn-S~~CGtC~~lty------------~g~si~vlaID~a~----~gfnis~~A~n~LT~g~a~~lG~V 105 (119)
T PF07249_consen 43 PYIGGAPAVAGWN-SPNCGTCWKLTY------------NGRSIYVLAIDHAG----GGFNISLDAMNDLTNGQAVELGRV 105 (119)
T ss_dssp TSEEEETT--STT--TTTT-EEEEEE------------TTEEEEEEEEEE-S----SSEEE-HHHHHHHHTS-CCCC-EE
T ss_pred CeeccccccccCC-CCCCCCeEEEEE------------CCeEEEEEEEecCC----CcccchHHHHHHhcCCcccceeEE
Confidence 34556554 4574 589999999996 57999999999988 889999999999965 478999
Q ss_pred EEEEEEC
Q 032897 125 KIEFNQA 131 (131)
Q Consensus 125 ~v~w~~~ 131 (131)
+++|++|
T Consensus 106 ~a~~~qV 112 (119)
T PF07249_consen 106 DATYTQV 112 (119)
T ss_dssp E-EEEEE
T ss_pred EEEEEEc
Confidence 9999985
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=94.02 E-value=0.06 Score=41.40 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=31.2
Q ss_pred EEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcCH
Q 032897 51 IAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLSQ 110 (131)
Q Consensus 51 ~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS~ 110 (131)
+||.+-.--.....|++||+++-++. + -.||+.+|.|++.--.--.+||||.-
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-----~--l~GKkmiVQ~tNtG~dlg~n~FDl~i 122 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSG-----P--LKGKKMIVQVTNTGGDLGSNQFDLAI 122 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SS-----T--TTT-EEEEEEEEE-TTTTTTEEEEE-
T ss_pred eeeeeecCCCCCCcccceEEEEEcCC-----C--cCCCEeEEEecccCCCCCCCeEEEEe
Confidence 55655221112367999999997652 1 26899999999987722228999864
No 14
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=65.19 E-value=3.4 Score=25.98 Aligned_cols=33 Identities=21% Similarity=0.620 Sum_probs=21.1
Q ss_pred ccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCC
Q 032897 57 AIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQ 103 (131)
Q Consensus 57 ~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~ 103 (131)
..|--.-+||..++|.-.+- . +| .++-+|| +|.
T Consensus 19 ~~ftyPCPCGDRFeIsLeDl-----~---~G-----E~VArCP-SCS 51 (67)
T COG5216 19 KTFTYPCPCGDRFEISLEDL-----R---NG-----EVVARCP-SCS 51 (67)
T ss_pred ceEEecCCCCCEeEEEHHHh-----h---CC-----ceEEEcC-Cce
Confidence 34444458999999975321 1 34 3456899 987
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.73 E-value=7.2 Score=26.45 Aligned_cols=12 Identities=8% Similarity=0.354 Sum_probs=6.2
Q ss_pred chhHHHHHHHHH
Q 032897 3 VGTKVLVITTMA 14 (131)
Q Consensus 3 ~~~~~~~~~~~~ 14 (131)
|+-|.++|+.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 554555555444
No 16
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=49.35 E-value=16 Score=26.75 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=11.8
Q ss_pred eeEEEEEeCCCCCCCCCC
Q 032897 25 SEGTATFYTPPYVPSACN 42 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC~ 42 (131)
..|+.+|+|.- ....|-
T Consensus 28 ~~G~i~f~G~I-~~~tC~ 44 (176)
T PRK15205 28 PAGDIHFTITI-KAKACE 44 (176)
T ss_pred CCeEEEEEEEE-Eeccce
Confidence 46899998863 346883
No 17
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.25 E-value=8.2 Score=24.56 Aligned_cols=38 Identities=24% Similarity=0.610 Sum_probs=23.6
Q ss_pred CCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCC--CceEcCHHHHH
Q 032897 63 AVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQ--ATIDLSQEAFS 114 (131)
Q Consensus 63 ~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~--~~lDLS~~AF~ 114 (131)
=.||..++|+-.+= . +|.. +-+|| +|. -.++-.++-|.
T Consensus 25 CpCGDrf~It~edL---~-----~ge~-----Va~Cp-sCSL~I~ViYd~edf~ 64 (67)
T KOG2923|consen 25 CPCGDRFQITLEDL---E-----NGED-----VARCP-SCSLIIRVIYDKEDFA 64 (67)
T ss_pred CCCCCeeeecHHHH---h-----CCCe-----eecCC-CceEEEEEEeCHHHhh
Confidence 37999999984221 1 3544 35799 998 45555555554
No 18
>PRK15241 putative fimbrial protein StaD; Provisional
Probab=46.71 E-value=25 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCchhHHHHHHHHHHHHhhccCceeeEEEEEeCCCCCCCCC
Q 032897 1 MGVGTKVLVITTMAICLISSAAYASEGTATFYTPPYVPSAC 41 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gaC 41 (131)
|+|- |++++.+++.+++.+.+.+..+..+|.|.= -...|
T Consensus 1 M~~~-k~~~~~~~~~~~~~~~~~a~~~~V~f~G~v-va~~C 39 (188)
T PRK15241 1 MKRN-KYLLAASVLAMIFPLTSQAEDINVDFTATV-LATTC 39 (188)
T ss_pred Ccch-HHHHHHHHHHHHhhhhhhccceEEEEEEEE-EecCc
Confidence 6663 455555555555566666778889998752 34578
No 19
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=46.50 E-value=24 Score=21.25 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.6
Q ss_pred CCchhHHHHHHHHHHHHhhcc
Q 032897 1 MGVGTKVLVITTMAICLISSA 21 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (131)
||+++..+++.+++++++.-+
T Consensus 1 mgig~~elliI~vi~llvFGp 21 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGA 21 (51)
T ss_pred CCCCHHHHHHHHHHHHHhcCc
Confidence 888988888877777666543
No 20
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=46.18 E-value=23 Score=23.65 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCchhHHHHHHHHHHHHhhcc
Q 032897 1 MGVGTKVLVITTMAICLISSA 21 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (131)
|++++..+++++++++++.-+
T Consensus 1 m~ig~~ElliI~vI~lllFGp 21 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGA 21 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcc
Confidence 889998888888777776654
No 21
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=42.83 E-value=16 Score=22.87 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.7
Q ss_pred EEEEeecCCCCCC------CceEcCHHHHHhhcC--CCCceEEEEE
Q 032897 91 LVKIVDLCPAGCQ------ATIDLSQEAFSQIAN--PDAGKIKIEF 128 (131)
Q Consensus 91 ~v~V~D~Cp~~C~------~~lDLS~~AF~~la~--~~~G~v~v~w 128 (131)
.+.+.++|. -|. ..+.||+-.|.+++. .-.|+.+-+|
T Consensus 17 ~~r~~nRC~-~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCE-RCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred Ccccceeee-cCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 477889999 665 678899999999975 4578887776
No 22
>PRK15239 putative fimbrial protein StaA; Provisional
Probab=41.18 E-value=27 Score=26.41 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhccC-ceeeEEEEEeCCCCCCCCCC
Q 032897 6 KVLVITTMAICLISSAA-YASEGTATFYTPPYVPSACN 42 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~a-~~~~G~aT~Y~~~~~~gaC~ 42 (131)
|+++..++++++..+.+ .+..|+.+|.|.= ....|-
T Consensus 3 ~~~l~~~~~~~~~~~~a~a~~~GtI~F~G~I-~d~tC~ 39 (197)
T PRK15239 3 KVLLATAVFMALGSSSVMAVEGGRINFEGLV-SAETCK 39 (197)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCEEEEEEEE-eeceee
Confidence 34444444444433333 3458999999863 356784
No 23
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=37.78 E-value=19 Score=24.04 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHHHH
Q 032897 1 MGVGTKVLVITTMAICL 17 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (131)
+||||-++||.++..+.
T Consensus 16 lGmg~VflfL~iLi~~~ 32 (84)
T COG3630 16 LGMGFVFLFLSILIYAM 32 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888777777766653
No 24
>PRK15300 fimbrial protein StiA; Provisional
Probab=37.52 E-value=28 Score=25.51 Aligned_cols=39 Identities=36% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHHHHHHhhccC---ceeeEEEEEeCCCCCCCCC
Q 032897 1 MGVGTKVLVITTMAICLISSAA---YASEGTATFYTPPYVPSAC 41 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---~~~~G~aT~Y~~~~~~gaC 41 (131)
|||-.+.+++++.+|++ +..+ ....|..+|.|.- ....|
T Consensus 1 mk~~~~~~~~~~~~~~~-~~~~~a~~~~~g~i~f~G~I-~~~tC 42 (179)
T PRK15300 1 MKLSLKTLTVALAAITL-SPAALADTAKDGTVHITGLI-KQNAC 42 (179)
T ss_pred CceeehhHHHHHHHHHh-CchhhhcccCCCEEEEEEEE-Ecccc
Confidence 88874444443333332 2222 2247889998863 35678
No 25
>PRK15307 major fimbrial protein StkA; Provisional
Probab=37.43 E-value=36 Score=25.63 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=11.4
Q ss_pred eeEEEEEeCCCCCCCCC
Q 032897 25 SEGTATFYTPPYVPSAC 41 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC 41 (131)
..|+.+|.|.= ....|
T Consensus 27 ~~g~I~F~G~I-~~~tC 42 (201)
T PRK15307 27 DTGTITFHGLV-TNNTC 42 (201)
T ss_pred CCCEEEEEEEE-eccce
Confidence 36889998863 35678
No 26
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=34.59 E-value=40 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhhccCceeeEEEEEeCCCCCCCCC
Q 032897 5 TKVLVITTMAICLISSAAYASEGTATFYTPPYVPSAC 41 (131)
Q Consensus 5 ~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gaC 41 (131)
-+++++++.+++.+.++.....|+.+|.|.= ....|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~a~~g~I~f~G~I-v~~tC 41 (197)
T PRK15262 6 MKKIILFLGLLFALTSPPAYAGQDVDLTANI-KNSTC 41 (197)
T ss_pred HHHHHHHHHHHHHhcccccccCCEEEEEEEE-EcCCc
Confidence 3555555555555566667888999998863 34678
No 27
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=34.54 E-value=27 Score=23.04 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=10.2
Q ss_pred CCchhHHHHHHHHHHH
Q 032897 1 MGVGTKVLVITTMAIC 16 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (131)
+||++-++||.++..+
T Consensus 16 lGMg~VfvFL~lLI~~ 31 (82)
T PRK02919 16 LGMGFVLAFLFLLIFA 31 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899766665555544
No 28
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.23 E-value=63 Score=16.66 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhcc
Q 032897 6 KVLVITTMAICLISSA 21 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (131)
|++++.++++..|+.-
T Consensus 8 Kkil~~l~a~~~LagC 23 (25)
T PF08139_consen 8 KKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6777777777666543
No 29
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=32.79 E-value=33 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHHHhhcc
Q 032897 1 MGVGTKVLVITTMAICLISSA 21 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (131)
|+|. |+|+++++++++....
T Consensus 1 ~~~~-kkl~~~~v~~~l~lg~ 20 (170)
T PRK12750 1 MKLA-KKLVLAAVVLPLTLGT 20 (170)
T ss_pred CchH-HHHHHHHHHHHHHHHh
Confidence 7887 8888887777766533
No 30
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=30.96 E-value=52 Score=24.22 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.7
Q ss_pred eeEEEEEeCCCCCCCCCC
Q 032897 25 SEGTATFYTPPYVPSACN 42 (131)
Q Consensus 25 ~~G~aT~Y~~~~~~gaC~ 42 (131)
..|+.+|.|.= ....|-
T Consensus 31 ~~G~I~f~G~I-~~~tC~ 47 (185)
T PRK15194 31 DGGTIHFEGEL-VNAACS 47 (185)
T ss_pred CceEEEEEEEE-Eeccce
Confidence 35899998863 346784
No 31
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=30.90 E-value=2e+02 Score=25.22 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcCHHHHHhhcCCCCceEEE
Q 032897 62 GAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLSQEAFSQIANPDAGKIKI 126 (131)
Q Consensus 62 g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~~~~G~v~v 126 (131)
|-.=+..++|+. +++++++.|++.=.---++.+-||..+|++|.-.+.-.+.|
T Consensus 26 g~~~~~rv~v~~------------~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v 78 (493)
T TIGR02645 26 GFTPQDRVEVRI------------GGKSLIAILVGSDTLVEMGEIGLSVSAVETFMAREGDIVTV 78 (493)
T ss_pred CCCcCCeEEEEe------------CCEEEEEEEecccccccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 445588999984 57889998876311011289999999999996444333444
No 32
>PRK15191 fimbrial protein BcfF; Provisional
Probab=30.84 E-value=26 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhccCceeeEEEEEeCCCCCCCCCC
Q 032897 7 VLVITTMAICLISSAAYASEGTATFYTPPYVPSACN 42 (131)
Q Consensus 7 ~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gaC~ 42 (131)
+++|+-+.+++..+.+....|+.+|+|.- ...+|-
T Consensus 3 ~~~~~~~~~~~~~~~~~a~~G~I~f~G~I-~~~tC~ 37 (172)
T PRK15191 3 NDILYGIGMLLAASGVQAHDGRVYVSGTI-TDNTCS 37 (172)
T ss_pred ceehhHHHHHhhcccccccCCEEEEEEEE-EcCCce
Confidence 33555555666666777778999999863 356894
No 33
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.23 E-value=48 Score=18.20 Aligned_cols=15 Identities=27% Similarity=0.864 Sum_probs=12.3
Q ss_pred cCCCCCCCceEcCHHH
Q 032897 97 LCPAGCQATIDLSQEA 112 (131)
Q Consensus 97 ~Cp~~C~~~lDLS~~A 112 (131)
+|| .|...+.++++.
T Consensus 4 ~CP-~C~~~f~v~~~~ 18 (37)
T PF13719_consen 4 TCP-NCQTRFRVPDDK 18 (37)
T ss_pred ECC-CCCceEEcCHHH
Confidence 589 999888888865
No 34
>PF15240 Pro-rich: Proline-rich
Probab=26.77 E-value=47 Score=25.22 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhccCceeeEEEEEeCC
Q 032897 9 VITTMAICLISSAAYASEGTATFYTP 34 (131)
Q Consensus 9 ~~~~~~~~~~~~~a~~~~G~aT~Y~~ 34 (131)
|||+++|+ +.|.|.-..=+..+++.
T Consensus 4 VLLSvALL-ALSSAQ~~dEdv~~e~~ 28 (179)
T PF15240_consen 4 VLLSVALL-ALSSAQSTDEDVSQEES 28 (179)
T ss_pred HHHHHHHH-HhhhccccccccccccC
Confidence 33333333 33444333444555544
No 35
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=26.36 E-value=28 Score=24.13 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=24.4
Q ss_pred cCCeEEEEEee-cCCCCCC-CceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 86 RGGSVLVKIVD-LCPAGCQ-ATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 86 ~g~sv~v~V~D-~Cp~~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
+.+.+++...| .|| .|. -+-.|. ...+++ .+.|.+.+.++.+
T Consensus 11 ~a~~~v~~f~d~~Cp-~C~~~~~~~~-~~~~~~--i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCP-HCAKFHEELE-KLLKKY--IDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSH-HHHHHHHHHH-HHHHHH--TTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCH-hHHHHHHHHh-hhhhhc--cCCCceEEEEEEc
Confidence 45566666667 799 887 333332 333333 3677888888753
No 36
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=24.60 E-value=40 Score=21.10 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred eEEEEEeecCCCCCC------CceEcCHHHHHhhcCC--CCceEEEEE
Q 032897 89 SVLVKIVDLCPAGCQ------ATIDLSQEAFSQIANP--DAGKIKIEF 128 (131)
Q Consensus 89 sv~v~V~D~Cp~~C~------~~lDLS~~AF~~la~~--~~G~v~v~w 128 (131)
.-.++..++|. -|. ..|-|+.-.|.++|.. -.|+.+-+|
T Consensus 15 ~~~~r~~nRC~-~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW 61 (61)
T COG0199 15 KSPGRGRNRCR-RCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61)
T ss_pred Ccccccccccc-ccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence 44567788999 776 5799999999999854 378888777
No 37
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.41 E-value=32 Score=24.22 Aligned_cols=39 Identities=28% Similarity=0.693 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcCH
Q 032897 62 GAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLSQ 110 (131)
Q Consensus 62 g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS~ 110 (131)
|-.+.+-++|+| | -|...+-..-=+|+|+ .|+..+-|.|
T Consensus 61 GmlStkav~V~C--------P-~C~K~TKmLGr~D~CM-~C~~pLTLd~ 99 (114)
T PF11023_consen 61 GMLSTKAVQVEC--------P-NCGKQTKMLGRVDACM-HCKEPLTLDP 99 (114)
T ss_pred hhhcccceeeEC--------C-CCCChHhhhchhhccC-cCCCcCccCc
Confidence 444566688887 3 2443333333349999 9985554444
No 38
>PRK15214 fimbrial protein PefA; Provisional
Probab=23.71 E-value=84 Score=23.39 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.0
Q ss_pred EEEEEeCCCCCCCCCC
Q 032897 27 GTATFYTPPYVPSACN 42 (131)
Q Consensus 27 G~aT~Y~~~~~~gaC~ 42 (131)
|+.+|.|.= ...+|-
T Consensus 23 gtI~F~G~I-v~~tC~ 37 (172)
T PRK15214 23 NEVTFLGSV-SATTCD 37 (172)
T ss_pred cEEEEEEEE-EcCCce
Confidence 899998863 356883
No 39
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=23.13 E-value=1.2e+02 Score=20.41 Aligned_cols=39 Identities=15% Similarity=0.498 Sum_probs=21.3
Q ss_pred cCCeEEEEEee-cCCCCCCCceEcCHHHHHhhcCCCCceEEEEEEE
Q 032897 86 RGGSVLVKIVD-LCPAGCQATIDLSQEAFSQIANPDAGKIKIEFNQ 130 (131)
Q Consensus 86 ~g~sv~v~V~D-~Cp~~C~~~lDLS~~AF~~la~~~~G~v~v~w~~ 130 (131)
+++.+.+.+.| .|| .|... .+ ..+++.. ..|.+++.++.
T Consensus 4 ~a~~~i~~f~D~~Cp-~C~~~---~~-~l~~~~~-~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCG-YCKKL---AP-ELEKLLK-EDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCCh-hHHHh---hH-HHHHHHH-HCCCceEEEEe
Confidence 35566667777 899 88721 12 2233321 23556666654
No 40
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.04 E-value=48 Score=20.88 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHH
Q 032897 2 GVGTKVLVITTMAICL 17 (131)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (131)
||++-+++|.++++.+
T Consensus 11 Gm~iVF~~L~lL~~~i 26 (79)
T PF04277_consen 11 GMGIVFLVLILLILVI 26 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777666666665553
No 41
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=22.84 E-value=93 Score=21.09 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=13.6
Q ss_pred CC-chhHHHHHHHHHHHHhhcc
Q 032897 1 MG-VGTKVLVITTMAICLISSA 21 (131)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~ 21 (131)
|| +++..++|+++++++++-.
T Consensus 1 Mg~~g~~elliIlvIvlllFG~ 22 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGT 22 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCc
Confidence 54 6677777777666666544
No 42
>KOG4517 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.57 E-value=95 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.672 Sum_probs=20.5
Q ss_pred CCeEEEEEeecCCCCCC-CceEcCHHHHHhhc
Q 032897 87 GGSVLVKIVDLCPAGCQ-ATIDLSQEAFSQIA 117 (131)
Q Consensus 87 g~sv~v~V~D~Cp~~C~-~~lDLS~~AF~~la 117 (131)
.++....|...|| +|. + +=++-|.+|+
T Consensus 59 ~R~t~~~v~~~~P-~~g~g---~lEdtftalg 86 (117)
T KOG4517|consen 59 KRTTTIAVLGGCP-GCGYG---VLEDTFTALG 86 (117)
T ss_pred ccccceEEEcCCC-ccccc---hhhhHHHHhh
Confidence 4667788899999 998 5 6677777664
No 43
>PRK13528 outer membrane receptor FepA; Provisional
Probab=20.64 E-value=62 Score=28.62 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 032897 1 MGVGTKVLVITTMAICLIS 19 (131)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (131)
|||++.+++-++.+|+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (727)
T PRK13528 1 MGMRVNKILWLLTVLLVGL 19 (727)
T ss_pred CCcccchhhhHHHHHHhhc
Confidence 8999998876655555443
No 44
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=20.54 E-value=77 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhccCceeeEEEEEeCC
Q 032897 6 KVLVITTMAICLISSAAYASEGTATFYTP 34 (131)
Q Consensus 6 ~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~ 34 (131)
|+++++.+.++++.+.+.+ +=..|+|
T Consensus 2 k~i~~~~~~~~~~~~~a~A---QWvV~DP 27 (55)
T PF13605_consen 2 KKILMLCVACLLLAGPARA---QWVVTDP 27 (55)
T ss_pred cchHHHHHHHHhcCCccee---EEEEeCc
Confidence 3455555555555555544 3344555
No 45
>PF08107 Antimicrobial12: Pleurocidin family; InterPro: IPR012515 This family consists of the pleurocidin family of antimicrobial peptides. Pleurocidins are found in the skin mucous secretions of the winter flounder (Pleuronectes americanus) and these peptides exhibit antimicrobial activity against Escherichia coli. Pleurocidin is predicted to assume an amphipathic alpha-helical conformation similar to other linear antimicrobial peptides and may play a role in innate host defence [].; GO: 0042742 defense response to bacterium; PDB: 1Z64_A 2OJM_A 2JOS_A.
Probab=20.25 E-value=34 Score=19.87 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhhccCcee
Q 032897 3 VGTKVLVITTMAICLISSAAYAS 25 (131)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~a~~~ 25 (131)
|.++.+|+..+++++-+.+++..
T Consensus 1 Mk~~a~flvl~lvvlMaePgE~~ 23 (42)
T PF08107_consen 1 MKCTALFLVLFLVVLMAEPGECF 23 (42)
T ss_dssp -----------------------
T ss_pred ChhHHHHHHHHHHHHHcCccccc
Confidence 45566677777777766666543
Done!