Query 032897
Match_columns 131
No_of_seqs 151 out of 1100
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032897.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032897hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n10a2 b.52.1.3 (A:1003-1145) 100.0 3.5E-32 2.5E-36 195.3 12.0 104 22-131 15-136 (143)
2 d1wc2a1 b.52.1.1 (A:1-180) End 99.9 3.3E-27 2.4E-31 174.3 7.7 108 22-131 12-155 (180)
3 d1bw3a_ b.52.1.2 (A:) Barwin { 98.8 2.6E-09 1.9E-13 72.1 5.0 57 62-131 60-121 (125)
4 d2enga_ b.52.1.1 (A:) Endogluc 95.3 0.0056 4E-07 44.3 3.3 51 51-109 72-123 (210)
5 d3cx5d2 f.23.11.1 (D:261-307) 45.7 5 0.00036 21.7 1.7 17 2-18 8-24 (47)
6 d1ppjd2 f.23.11.1 (D:196-241) 44.7 6.6 0.00048 21.0 2.1 17 2-18 8-24 (46)
7 d2uubn1 g.39.1.7 (N:2-61) Ribo 37.9 2.3 0.00017 24.2 -0.6 36 92-128 17-60 (60)
8 d1v58a1 c.47.1.9 (A:62-230) Th 31.2 9.7 0.00071 24.7 1.7 36 88-131 37-74 (169)
9 d1b8ta1 g.39.1.3 (A:1-35) Cyst 26.0 6.4 0.00047 19.6 -0.1 16 58-73 3-18 (35)
10 d2dlqa2 g.37.1.1 (A:35-62) GLI 21.7 9.9 0.00072 17.8 0.1 7 63-69 5-11 (28)
No 1
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=99.97 E-value=3.5e-32 Score=195.33 Aligned_cols=104 Identities=28% Similarity=0.484 Sum_probs=89.1
Q ss_pred CceeeEEEEEeCCCC------CCCCC-CCCc---CCCceEEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEE
Q 032897 22 AYASEGTATFYTPPY------VPSAC-NGYK---NDGVMIAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVL 91 (131)
Q Consensus 22 a~~~~G~aT~Y~~~~------~~gaC-~~~~---~~~~~~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~ 91 (131)
.+|++|+||||+.++ .+||| |+++ +.+.++||+|+.+|++|..||+||||+|.+ +..|.+++|+
T Consensus 15 ~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~------~~~c~~~sv~ 88 (143)
T d1n10a2 15 DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK------PEACSGEPVV 88 (143)
T ss_dssp CSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECS------STTBCSCCEE
T ss_pred CCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCC------CCcccCCCEE
Confidence 589999999998653 36999 6543 367899999999999999999999999965 5678999999
Q ss_pred EEEeecCCCCCC-CceEcCHHHHHhhcCC-------CCceEEEEEEEC
Q 032897 92 VKIVDLCPAGCQ-ATIDLSQEAFSQIANP-------DAGKIKIEFNQA 131 (131)
Q Consensus 92 v~V~D~Cp~~C~-~~lDLS~~AF~~la~~-------~~G~v~v~w~~~ 131 (131)
|+|||.||..|. +|||||+.||++|++. +.|+++|+||||
T Consensus 89 V~vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV 136 (143)
T d1n10a2 89 VHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRV 136 (143)
T ss_dssp EEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEEC
T ss_pred EEEEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEE
Confidence 999999995456 8999999999999975 579999999997
No 2
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=99.94 E-value=3.3e-27 Score=174.30 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=87.8
Q ss_pred CceeeEEEEEeCCCCCCCCC-CCCcC--------CCceEEEeccccccC------CCCCCcEEEEEEcCcCCCCCCCCc-
Q 032897 22 AYASEGTATFYTPPYVPSAC-NGYKN--------DGVMIAAASYAIWNN------GAVCNKSFRVKCTGATNQGTPHPC- 85 (131)
Q Consensus 22 a~~~~G~aT~Y~~~~~~gaC-~~~~~--------~~~~~aAls~~~~~~------g~~CG~c~~V~~~~~~~~~~p~~c- 85 (131)
.-|+.+++|||+.. ..||| |++.. ++.++||+|+.+|++ |..||+||||+|++......+..|
T Consensus 12 ~g~~~A~aT~Ygd~-~~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~~~~~ 90 (180)
T d1wc2a1 12 NGKSCASTTNYHDS-HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVR 90 (180)
T ss_dssp TTEEEEEEEEECCC-BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCC
T ss_pred CCccccceEEeCCC-CCCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccCCCCC
Confidence 46899999999975 67999 67642 357899999999999 899999999999874332212222
Q ss_pred cCCeEEEEEeecCCCC------CC--------------CceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 86 RGGSVLVKIVDLCPAG------CQ--------------ATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 86 ~g~sv~v~V~D~Cp~~------C~--------------~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
.|++|+|+|||.||+. |. .||||+ .+|.+|+....|+|+|+||||
T Consensus 91 ~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~~~~G~v~V~yrrV 155 (180)
T d1wc2a1 91 EGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVV 155 (180)
T ss_dssp TTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGGGTCSSEEEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhhhcCCcceeEEEEe
Confidence 3789999999999951 53 299998 599999999999999999997
No 3
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=98.80 E-value=2.6e-09 Score=72.08 Aligned_cols=57 Identities=26% Similarity=0.608 Sum_probs=47.1
Q ss_pred CCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCCCceEcC-HHHHHhhcCC----CCceEEEEEEEC
Q 032897 62 GAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQATIDLS-QEAFSQIANP----DAGKIKIEFNQA 131 (131)
Q Consensus 62 g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~~~lDLS-~~AF~~la~~----~~G~v~v~w~~~ 131 (131)
-..||+|++||++. +|.+++++|||+|.. +.|||. +..|++|-.. ..|.+.|.|+.|
T Consensus 60 q~sCGkclrvTN~a----------tga~~~~RiVDqCsn---gGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~fV 121 (125)
T d1bw3a_ 60 QAACGKCLRVTNPA----------TGAQITARIVDQCAN---GGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFV 121 (125)
T ss_dssp GGGTTCEEEEEETT----------TTEEEEEEEEECCSS---SSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEE
T ss_pred cccccceEEeeecc----------cCcEEEEEEeecccC---CCCccccHhhhheecCCCcccccccEEEEEEEe
Confidence 46899999999643 789999999999983 799999 7899999643 468888888754
No 4
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}
Probab=95.33 E-value=0.0056 Score=44.31 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=33.5
Q ss_pred EEEeccccccCCCCCCcEEEEEEcCcCCCCCCCCccCCeEEEEEeecCCCCCC-CceEcC
Q 032897 51 IAAASYAIWNNGAVCNKSFRVKCTGATNQGTPHPCRGGSVLVKIVDLCPAGCQ-ATIDLS 109 (131)
Q Consensus 51 ~aAls~~~~~~g~~CG~c~~V~~~~~~~~~~p~~c~g~sv~v~V~D~Cp~~C~-~~lDLS 109 (131)
+||.+-.-......|.+|||++-++. | -+||+.+|+|++.-- .=. +||||.
T Consensus 72 fAA~~~~g~~e~~~Cc~Cy~LtFTs~-----~--~~GKkMiVQ~tNTGg-Dlg~n~FDl~ 123 (210)
T d2enga_ 72 FAATSIAGSNEAGWCCACYELTFTSG-----P--VAGKKMVVQSTSTGG-DLGSNHFDLN 123 (210)
T ss_dssp EEEEECTTCCHHHHTTCEEEEEECSG-----G--GTTCEEEEEEEEC------CCEEEEE
T ss_pred eeeeeecCCCccccccccEEEEeecC-----C--cCCCEEEEEEeccCC-ccCCCeeeEe
Confidence 56665332233467999999997652 1 169999999999876 333 889886
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.68 E-value=5 Score=21.69 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHHHHh
Q 032897 2 GVGTKVLVITTMAICLI 18 (131)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (131)
+||+|.++++++++++.
T Consensus 8 ~mg~K~~~i~s~l~~~~ 24 (47)
T d3cx5d2 8 RLGLKTVIILSSLYLLS 24 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888888888777765
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=44.71 E-value=6.6 Score=20.99 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHHHHh
Q 032897 2 GVGTKVLVITTMAICLI 18 (131)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (131)
.||+|.+++++++.+++
T Consensus 8 ~mG~Kv~~~l~~l~~l~ 24 (46)
T d1ppjd2 8 RMGLKMLLMMGLLLPLV 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888887777665
No 7
>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
Probab=37.90 E-value=2.3 Score=24.24 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=29.3
Q ss_pred EEEeecCCCCCC------CceEcCHHHHHhhcC--CCCceEEEEE
Q 032897 92 VKIVDLCPAGCQ------ATIDLSQEAFSQIAN--PDAGKIKIEF 128 (131)
Q Consensus 92 v~V~D~Cp~~C~------~~lDLS~~AF~~la~--~~~G~v~v~w 128 (131)
+++.++|. -|+ ..|.||.-.|.+++. .-.|+.+-+|
T Consensus 17 tR~~NRC~-~tGR~Rg~~r~F~lsR~~fR~la~~G~ipGv~KaSW 60 (60)
T d2uubn1 17 VRAYTRCV-RCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60 (60)
T ss_dssp GGCCCCCT-TTCCCSSBCTTTSCBHHHHHHHHHHTCSTTCEECCC
T ss_pred cccceecc-CCCCCceeecccccHHHHHHHHHHcCCCCCeeecCC
Confidence 57889999 554 789999999999974 5678887776
No 8
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.23 E-value=9.7 Score=24.72 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=20.7
Q ss_pred CeEEEEEee-cCCCCCC-CceEcCHHHHHhhcCCCCceEEEEEEEC
Q 032897 88 GSVLVKIVD-LCPAGCQ-ATIDLSQEAFSQIANPDAGKIKIEFNQA 131 (131)
Q Consensus 88 ~sv~v~V~D-~Cp~~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~~ 131 (131)
+.+++..+| .|| .|. -+-.| +++ .+.|.+.+.|..+
T Consensus 37 ~~tv~vF~D~~CP-~C~~~~~~l-----~~l--~~~~~v~v~~~~~ 74 (169)
T d1v58a1 37 PVIVYVFADPFCP-YCKQFWQQA-----RPW--VDSGKVQLRTLLV 74 (169)
T ss_dssp SEEEEEEECTTCH-HHHHHHHHH-----HHH--HHTTSEEEEEEEC
T ss_pred CEEEEEEECCCCc-chHHHHHHH-----HHH--HhccceeEEEEec
Confidence 344455566 899 887 22111 222 2567888888754
No 9
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.98 E-value=6.4 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=12.5
Q ss_pred cccCCCCCCcEEEEEE
Q 032897 58 IWNNGAVCNKSFRVKC 73 (131)
Q Consensus 58 ~~~~g~~CG~c~~V~~ 73 (131)
.|..|..||.|-+-.+
T Consensus 3 n~ggg~kcg~c~ktvy 18 (35)
T d1b8ta1 3 NWGGGKKCGVCQKAVY 18 (35)
T ss_dssp CCCCCEECTTTCCEEC
T ss_pred ccCCCceeccccceEe
Confidence 5788999999976544
No 10
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.73 E-value=9.9 Score=17.84 Aligned_cols=7 Identities=29% Similarity=0.899 Sum_probs=5.0
Q ss_pred CCCCcEE
Q 032897 63 AVCNKSF 69 (131)
Q Consensus 63 ~~CG~c~ 69 (131)
..||+||
T Consensus 5 ~kcgkcy 11 (28)
T d2dlqa2 5 PKCGKCY 11 (28)
T ss_dssp TTTCCBC
T ss_pred ccchhhh
Confidence 4688886
Done!