BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032900
         (131 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
           OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTW 119
           + K+ Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++ W
Sbjct: 86  IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144

Query: 120 FVYRYLLFKPDR 131
           F Y+ L+FKPDR
Sbjct: 145 FTYKNLVFKPDR 156


>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis
           thaliana GN=At4g01150 PE=1 SV=1
          Length = 164

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 25  TLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
           T+P L L   N  Q    +  +AS E + S  +  +   ++  WD   E++  ++  G  
Sbjct: 42  TVP-LKLVSGNGLQKVELLKTRASSEETSSIDTNELITDLKEKWDGL-ENKSTVLIYGGG 99

Query: 85  GIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131
            IVA+W S  ++ AI+ +P++P  +EL+G+ ++ WFVYRYLLFK  R
Sbjct: 100 AIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSR 146


>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
           GN=gltX PE=3 SV=1
          Length = 881

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 95  LITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131
           +I A+D +PI+    ELIG+++  WFVYRYLL + +R
Sbjct: 826 VIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNR 862


>sp|Q8YX97|SYV_NOSS1 Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
           GN=valS PE=3 SV=1
          Length = 1014

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 76  LGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131
           L  IGL  AG+V L  ++ +   +D +P +    E++G+ +S WFV R LL  P R
Sbjct: 845 LKTIGLVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPAR 900


>sp|Q02896|YDC1_YEAST Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=YDC1 PE=1 SV=1
          Length = 317

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 44 VAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
          +A+ S   + S   +T F S  + W N  E R  LIG+GF+
Sbjct: 36 IAEWSNTITNSIFLMTAFYSTYSAWRNKLETRYILIGMGFS 76


>sp|Q9KW13|RPOC_SHEVI DNA-directed RNA polymerase subunit beta' OS=Shewanella violacea
            GN=rpoC PE=3 SV=1
          Length = 1409

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 35   NEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWD 69
            ++K+N  A+ AKASG++SE +T++T  ++ +N+ D
Sbjct: 1367 HQKRNA-ALAAKASGKTSEQATTITASEAERNLAD 1400


>sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS=Azotobacter vinelandii
           GN=algE7 PE=1 SV=1
          Length = 856

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 16/62 (25%)

Query: 47  ASGESSESSTSLTVFKSVQNVWDNSS---------EDRLGLIGLGFAGI-------VALW 90
           + GE ++     +V  S QN  DN S         EDR+ L GLGF+G+       + LW
Sbjct: 591 SGGEGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRIDLSGLGFSGLGDGHNGTLLLW 650

Query: 91  AS 92
            S
Sbjct: 651 TS 652


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,980,859
Number of Sequences: 539616
Number of extensions: 1627520
Number of successful extensions: 4108
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4098
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)