Query 032900
Match_columns 131
No_of_seqs 127 out of 173
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 5.2E-38 1.1E-42 245.9 11.5 95 36-131 52-149 (167)
2 PF14159 CAAD: CAAD domains of 99.9 5.4E-27 1.2E-31 167.0 6.9 72 59-131 3-74 (90)
3 PF14159 CAAD: CAAD domains of 86.6 1.4 3E-05 31.5 4.3 46 61-107 1-47 (90)
4 PF01810 LysE: LysE type trans 83.0 5.5 0.00012 29.8 6.3 34 96-129 48-82 (191)
5 PRK09304 arginine exporter pro 81.2 4.3 9.4E-05 31.6 5.4 33 94-126 57-89 (207)
6 TIGR00948 2a75 L-lysine export 80.9 5.4 0.00012 30.0 5.6 36 91-126 40-75 (177)
7 PF12911 OppC_N: N-terminal TM 80.8 3.8 8.2E-05 25.5 4.0 26 62-87 3-28 (56)
8 PRK10520 rhtB homoserine/homos 79.1 6.8 0.00015 30.1 5.8 50 78-127 43-93 (205)
9 PRK10323 cysteine/O-acetylseri 77.8 7.9 0.00017 29.9 5.8 49 78-126 43-92 (195)
10 TIGR00949 2A76 The Resistance 77.5 7 0.00015 29.3 5.3 34 93-126 41-74 (185)
11 PRK10958 leucine export protei 77.3 6.5 0.00014 30.8 5.3 33 93-125 63-95 (212)
12 PF11190 DUF2976: Protein of u 76.9 6.9 0.00015 28.2 4.8 73 50-126 5-81 (87)
13 PRK10229 threonine efflux syst 75.9 7.8 0.00017 29.8 5.3 34 93-126 58-91 (206)
14 PF10031 DUF2273: Small integr 75.5 13 0.00027 24.2 5.4 33 65-100 1-34 (51)
15 PF11364 DUF3165: Protein of u 68.0 30 0.00066 24.9 6.4 51 81-131 29-79 (81)
16 PF11351 DUF3154: Protein of u 65.4 23 0.00049 26.3 5.6 25 102-128 95-119 (123)
17 TIGR03745 conj_TIGR03745 integ 59.4 29 0.00062 26.0 5.1 50 49-102 20-69 (104)
18 COG1280 RhtB Putative threonin 57.0 36 0.00078 26.7 5.7 37 91-127 57-93 (208)
19 PF06072 Herpes_US9: Alphaherp 54.2 67 0.0015 22.0 5.8 47 53-99 7-55 (60)
20 COG4709 Predicted membrane pro 54.1 45 0.00097 27.5 5.9 34 82-120 90-123 (195)
21 PF11833 DUF3353: Protein of u 51.1 63 0.0014 25.9 6.2 59 59-124 74-135 (194)
22 PF06522 B12D: NADH-ubiquinone 48.8 16 0.00034 24.9 2.2 19 112-130 15-33 (73)
23 PF05552 TM_helix: Conserved T 42.2 45 0.00098 20.9 3.4 39 63-101 3-41 (53)
24 PF04418 DUF543: Domain of unk 41.5 35 0.00076 23.8 3.0 31 63-93 17-49 (75)
25 PF11833 DUF3353: Protein of u 41.2 1.2E+02 0.0027 24.2 6.5 51 74-124 138-193 (194)
26 PF10958 DUF2759: Protein of u 39.3 75 0.0016 21.2 4.1 42 85-126 3-44 (52)
27 PF10192 GpcrRhopsn4: Rhodopsi 38.3 82 0.0018 25.4 5.1 51 72-122 170-222 (257)
28 PRK07193 fliF flagellar MS-rin 37.9 52 0.0011 30.4 4.4 31 58-88 6-39 (552)
29 PLN00092 photosystem I reactio 37.1 1.2E+02 0.0027 23.7 5.7 20 108-127 109-128 (137)
30 PF07787 DUF1625: Protein of u 36.6 1.2E+02 0.0026 24.5 5.8 31 77-108 187-218 (248)
31 KOG4452 Predicted membrane pro 35.2 23 0.00049 25.2 1.3 21 102-122 18-38 (79)
32 COG4956 Integral membrane prot 33.8 1.9E+02 0.0042 25.9 7.0 47 83-129 86-134 (356)
33 COG2076 EmrE Membrane transpor 32.5 2E+02 0.0044 21.3 6.0 51 59-120 14-64 (106)
34 PF13124 DUF3963: Protein of u 30.6 66 0.0014 20.3 2.7 18 74-91 22-39 (40)
35 PF06716 DUF1201: Protein of u 30.3 36 0.00078 22.6 1.5 16 114-129 24-39 (54)
36 COG1766 fliF Flagellar basal b 28.6 88 0.0019 29.1 4.2 33 59-91 7-39 (545)
37 PF05251 UPF0197: Uncharacteri 27.8 50 0.0011 23.4 2.0 25 102-126 16-40 (77)
38 PF10710 DUF2512: Protein of u 27.6 1.6E+02 0.0034 22.5 4.9 68 59-128 41-112 (136)
39 TIGR03717 R_switched_YjbE inte 26.3 2.5E+02 0.0053 22.0 5.9 47 76-126 128-174 (176)
40 PRK06012 flhA flagellar biosyn 26.2 2.1E+02 0.0046 27.4 6.4 30 95-124 300-329 (697)
41 PF12263 DUF3611: Protein of u 25.4 1.4E+02 0.003 24.0 4.4 24 103-126 58-81 (183)
42 PF06295 DUF1043: Protein of u 25.3 68 0.0015 23.8 2.5 18 76-93 1-18 (128)
43 TIGR00766 ribonuclease, putati 25.1 1.6E+02 0.0035 23.5 4.8 42 59-102 65-110 (263)
44 PRK06007 fliF flagellar MS-rin 24.9 1.4E+02 0.0031 27.3 4.9 50 58-107 6-56 (542)
45 PF14372 DUF4413: Domain of un 24.4 91 0.002 21.9 2.9 27 59-87 35-61 (101)
46 PF10003 DUF2244: Integral mem 23.2 2.3E+02 0.0049 21.1 5.0 19 108-126 43-61 (140)
47 cd00928 Cyt_c_Oxidase_VIIa Cyt 23.1 83 0.0018 21.0 2.3 16 109-124 38-53 (55)
48 PF14242 DUF4342: Domain of un 22.7 1.9E+02 0.0042 20.4 4.3 14 57-70 15-28 (84)
49 TIGR00206 fliF flagellar basal 22.4 1.9E+02 0.0041 26.7 5.2 29 59-87 7-35 (555)
50 PF08606 Prp19: Prp19/Pso4-lik 22.3 84 0.0018 22.0 2.3 13 58-70 7-19 (70)
51 PF04367 DUF502: Protein of un 22.0 2.6E+02 0.0055 19.9 4.9 30 79-108 11-40 (108)
52 PF03741 TerC: Integral membra 22.0 2.5E+02 0.0055 22.0 5.2 48 72-123 131-179 (183)
53 TIGR01398 FlhA flagellar biosy 21.6 3.2E+02 0.0069 26.3 6.6 29 96-124 284-312 (678)
54 PF13150 DUF3989: Protein of u 20.7 3.2E+02 0.0069 19.3 5.2 19 59-77 10-28 (85)
55 PRK10650 multidrug efflux syst 20.3 3.5E+02 0.0077 19.7 6.2 51 59-120 19-69 (109)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=5.2e-38 Score=245.90 Aligned_cols=95 Identities=43% Similarity=0.872 Sum_probs=90.8
Q ss_pred hhhhhhhHhHhhcCCCCCCCc--h-hhHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHH
Q 032900 36 EKQNCLAIVAKASGESSESST--S-LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELI 112 (131)
Q Consensus 36 ~~~~~~~v~~~a~~e~~~~~~--~-~ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELV 112 (131)
||++.++|++||++|++++.+ + +|++|++||+||+ +|||+++++++++++|++|++.+||+|||+|||+|++||||
T Consensus 52 c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~-~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELV 130 (167)
T PLN02777 52 CRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWDK-VEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELV 130 (167)
T ss_pred HHHhHHHHHHHhccCCCcccccccHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHh
Confidence 899999999999999887632 2 5999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCC
Q 032900 113 GILFSTWFVYRYLLFKPDR 131 (131)
Q Consensus 113 GigYt~WF~yRyLlf~~~R 131 (131)
||||++||+||||+|++||
T Consensus 131 GigYs~WF~yRyLLfke~R 149 (167)
T PLN02777 131 GIGYTGWFAYKNLVFKPDR 149 (167)
T ss_pred hhhhhhhhhhhHhcCcccH
Confidence 9999999999999999998
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.94 E-value=5.4e-27 Score=167.04 Aligned_cols=72 Identities=40% Similarity=0.753 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhccCCCC
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLlf~~~R 131 (131)
++-+++++.|++ ++.+...+++++++++++|++.++++|||+||++|++||+||+||++||+||||+|++||
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R 74 (90)
T PF14159_consen 3 KLPEYWGEFFDK-YKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENR 74 (90)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhH
Confidence 567788889999 888999999999999999999999999999999999999999999999999999999998
No 3
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=86.63 E-value=1.4 Score=31.47 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHH-HHhhccCCchh
Q 032900 61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLI-TAIDKLPIIPN 107 (131)
Q Consensus 61 ~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl-~AId~iPLlp~ 107 (131)
++++++.|++ .++++....+.++++++.-+..-+. ..+|.|--+|-
T Consensus 1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPl 47 (90)
T PF14159_consen 1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPL 47 (90)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3689999999 9999999999999988766665555 45566665553
No 4
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=82.99 E-value=5.5 Score=29.84 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=28.4
Q ss_pred HHHh-hccCCchhhHHHHHHHHHHHHHhhhhccCC
Q 032900 96 ITAI-DKLPIIPNALELIGILFSTWFVYRYLLFKP 129 (131)
Q Consensus 96 l~AI-d~iPLlp~llELVGigYt~WF~yRyLlf~~ 129 (131)
++++ +..|.+-..++++|..|..|+.|+.+..+.
T Consensus 48 ~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 48 LSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444 669999999999999999999999886543
No 5
>PRK09304 arginine exporter protein; Provisional
Probab=81.21 E-value=4.3 Score=31.56 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 94 NLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 94 ~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
++-.-++..|.+=.++.++|..|..|..|+-+-
T Consensus 57 Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 57 GGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333347899999999999999999999998653
No 6
>TIGR00948 2a75 L-lysine exporter.
Probab=80.88 E-value=5.4 Score=29.97 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=29.1
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 91 ASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 91 ~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
...++-.-++..|.+=..+.++|-.|..|..||-+-
T Consensus 40 ~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r 75 (177)
T TIGR00948 40 GVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAK 75 (177)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556789999999999999999999998765
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=80.78 E-value=3.8 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhcChhHHHHHHHHHHH
Q 032900 62 KSVQNVWDNSSEDRLGLIGLGFAGIV 87 (131)
Q Consensus 62 k~lq~~Wd~~~e~k~~~~~l~~~aiv 87 (131)
+..|+.|.+..+||.+++|+++.+++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~ 28 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLIL 28 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 35788888888899999987655444
No 8
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=79.14 E-value=6.8 Score=30.13 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhcc
Q 032900 78 LIGLGFAGIV-ALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLF 127 (131)
Q Consensus 78 ~~~l~~~aiv-al~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLlf 127 (131)
.+|...|-.+ +.-...++-.-++..|.+=..++++|.+|..|+.+|-+-.
T Consensus 43 ~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 43 IAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344443333 2333345555678889999999999999999999987653
No 9
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=77.79 E-value=7.9 Score=29.91 Aligned_cols=49 Identities=12% Similarity=0.301 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 78 LIGLGFAGIVALWASVNLI-TAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 78 ~~~l~~~aival~~~~~vl-~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
..|...|..+-..+..+.+ .-++..|.+=..+.++|..|..|..||-+-
T Consensus 43 ~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~ 92 (195)
T PRK10323 43 LAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIAT 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555433344444 346688999999999999999999999764
No 10
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=77.48 E-value=7 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.5
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
.++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 41 ~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 41 LGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788999999999999999999998654
No 11
>PRK10958 leucine export protein LeuE; Provisional
Probab=77.28 E-value=6.5 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhhhh
Q 032900 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYL 125 (131)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigYt~WF~yRyL 125 (131)
.++-.-++..|.+-..++++|.+|..|+.||-+
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677899999999999999999999865
No 12
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=76.86 E-value=6.9 Score=28.18 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=48.8
Q ss_pred CCCCCCchhhHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhhHHHHHHHHHHHHHhhhh
Q 032900 50 ESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLP----IIPNALELIGILFSTWFVYRYL 125 (131)
Q Consensus 50 e~~~~~~~~ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iP----Llp~llELVGigYt~WF~yRyL 125 (131)
|.|++..+..+.+.+|+ |..|-..++|++++++..+++..+.+++-+++- =-..+-..+.+|...-++.=||
T Consensus 5 e~Ps~g~~~~~~~~i~~----y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwL 80 (87)
T PF11190_consen 5 EPPSSGGGGGIMETIKG----YAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWL 80 (87)
T ss_pred CCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHH
Confidence 34444445677777777 345678899999999999999999999988763 2334445555554444444444
Q ss_pred c
Q 032900 126 L 126 (131)
Q Consensus 126 l 126 (131)
+
T Consensus 81 l 81 (87)
T PF11190_consen 81 L 81 (87)
T ss_pred H
Confidence 4
No 13
>PRK10229 threonine efflux system; Provisional
Probab=75.94 E-value=7.8 Score=29.76 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.6
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 93 VNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 93 ~~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
.++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566788999999999999999999998664
No 14
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=75.52 E-value=13 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 032900 65 QNVWDNSSEDRLGLIGLGFAGIVA-LWASVNLITAID 100 (131)
Q Consensus 65 q~~Wd~~~e~k~~~~~l~~~aiva-l~~~~~vl~AId 100 (131)
||.|++ ++...+|.++|.+++ +++..+.-.++-
T Consensus 1 ~e~~~~---~~~~iiG~~~G~ila~l~l~~GF~~tl~ 34 (51)
T PF10031_consen 1 MEFWKN---HRGKIIGGLIGLILALLILTFGFWKTLF 34 (51)
T ss_pred ChHHHH---CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577887 555666666666665 477777777764
No 15
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=67.97 E-value=30 Score=24.89 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhccCCCC
Q 032900 81 LGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDR 131 (131)
Q Consensus 81 l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLlf~~~R 131 (131)
+++.+++++-+..++++.+.-.-+-|.+|--+|+...++|.+|.+.+=++|
T Consensus 29 i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k 79 (81)
T PF11364_consen 29 IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTK 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 345556667777888899888888899999999999999999998765543
No 16
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=65.38 E-value=23 Score=26.30 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=20.8
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhhccC
Q 032900 102 LPIIPNALELIGILFSTWFVYRYLLFK 128 (131)
Q Consensus 102 iPLlp~llELVGigYt~WF~yRyLlf~ 128 (131)
+| ..+..|.|++++++|+.|..-|.
T Consensus 95 vp--e~lw~Llg~~vlgy~~~Rs~eK~ 119 (123)
T PF11351_consen 95 VP--EPLWWLLGAGVLGYFGARSQEKR 119 (123)
T ss_pred CC--HHHHHHHHHHHhhhHHHhhHHHH
Confidence 55 57889999999999999976543
No 17
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=59.41 E-value=29 Score=25.99 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=38.4
Q ss_pred CCCCCCCchhhHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 032900 49 GESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKL 102 (131)
Q Consensus 49 ~e~~~~~~~~ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~i 102 (131)
-|.|++.....+.+.+|+ |-.|-..++|++++++..+++..+.+.+-+++
T Consensus 20 ~e~PS~G~g~g~~~tik~----Y~~dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 20 VEAPSRGGGSGIMQTIKN----YGYDGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CCCCCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444568999998 34568889999999999999999988887765
No 18
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=57.02 E-value=36 Score=26.75 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhcc
Q 032900 91 ASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLF 127 (131)
Q Consensus 91 ~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLlf 127 (131)
+..++-.-+..-|.+-..+.++|-.|..|..++-+..
T Consensus 57 ~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra 93 (208)
T COG1280 57 AALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRA 93 (208)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334446678899999999999999999999997664
No 19
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=54.20 E-value=67 Score=21.98 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=25.9
Q ss_pred CCCchhhHHHHHHHHhhhhhcC-hhHH-HHHHHHHHHHHHHHHHHHHHh
Q 032900 53 ESSTSLTVFKSVQNVWDNSSED-RLGL-IGLGFAGIVALWASVNLITAI 99 (131)
Q Consensus 53 ~~~~~~ei~k~lq~~Wd~~~e~-k~~~-~~l~~~aival~~~~~vl~AI 99 (131)
+.+|.+|++..+...=.+.... +... ...++.+++++-++++.++++
T Consensus 7 DnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 7 DNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred ccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455679998886543220112 2222 233445555677778877776
No 20
>COG4709 Predicted membrane protein [Function unknown]
Probab=54.07 E-value=45 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 032900 82 GFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120 (131)
Q Consensus 82 ~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF 120 (131)
.+.+++++|+..+++-+|=.+ ++-..=+.+++|+
T Consensus 90 ~~~v~i~Lpl~~~vi~~viai-----lv~~lt~if~~~a 123 (195)
T COG4709 90 LLAVIIGLPLLIGVILFVIAI-----LVAALTLIFSGWA 123 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 466777899988888877544 3333334444444
No 21
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=51.06 E-value=63 Score=25.92 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=38.8
Q ss_pred hHHHHHHHH---hhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhh
Q 032900 59 TVFKSVQNV---WDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRY 124 (131)
Q Consensus 59 ei~k~lq~~---Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRy 124 (131)
+...++|+. +|. .+..-...-.++.+++++|....- -+=.|++.=-+|++.+.||.+|.
T Consensus 74 ~~p~wl~~~~~~~~~-P~~~~l~~~~~~f~~L~~~~~~~~------~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 74 PSPPWLQRLLPSFDT-PSSQDLLIRAAAFGALGLWSLLFP------AASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred ccchHHHhcccceeC-CCcchHHHHHHHHHHHHHHHHHHc------CCCCcchHHHHHHHHHHHHHHHh
Confidence 334455554 888 777766666666666777766551 23334455568999999999986
No 22
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=48.76 E-value=16 Score=24.89 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhccCCC
Q 032900 112 IGILFSTWFVYRYLLFKPD 130 (131)
Q Consensus 112 VGigYt~WF~yRyLlf~~~ 130 (131)
+|++..++|.+|+|+..+|
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3455677999999988775
No 23
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=42.18 E-value=45 Score=20.90 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=17.1
Q ss_pred HHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032900 63 SVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDK 101 (131)
Q Consensus 63 ~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~ 101 (131)
.+++.|++..+.-+.+++-++-.+++.|+...+-+.+++
T Consensus 3 ~~~~~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~ 41 (53)
T PF05552_consen 3 PLSGMLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVRR 41 (53)
T ss_dssp ----------GGHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666664444445555555566677776666665544
No 24
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=41.53 E-value=35 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=21.6
Q ss_pred HHHHHhhhhhcChh--HHHHHHHHHHHHHHHHH
Q 032900 63 SVQNVWDNSSEDRL--GLIGLGFAGIVALWASV 93 (131)
Q Consensus 63 ~lq~~Wd~~~e~k~--~~~~l~~~aival~~~~ 93 (131)
.+.++||.-.+|-+ ...|+++|++.++++.-
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 78999999667733 45666777777666543
No 25
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=41.19 E-value=1.2e+02 Score=24.23 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=33.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCch--hhHHHH---HHHHHHHHHhhh
Q 032900 74 DRLGLIGLGFAGIVALWASVNLITAIDKLPIIP--NALELI---GILFSTWFVYRY 124 (131)
Q Consensus 74 ~k~~~~~l~~~aival~~~~~vl~AId~iPLlp--~llELV---GigYt~WF~yRy 124 (131)
+....+++.+++++.-|+.++++...-..+.+| ...|.+ =.....|++.-+
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~f 193 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLF 193 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 455588899999999999999998776665554 333433 333445665544
No 26
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=39.26 E-value=75 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.444 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 85 GIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 85 aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
++|++-..-+++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888899999999999999999876554
No 27
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=38.26 E-value=82 Score=25.44 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=41.1
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHh--hccCCchhhHHHHHHHHHHHHHh
Q 032900 72 SEDRLGLIGLGFAGIVALWASVNLITAI--DKLPIIPNALELIGILFSTWFVY 122 (131)
Q Consensus 72 ~e~k~~~~~l~~~aival~~~~~vl~AI--d~iPLlp~llELVGigYt~WF~y 122 (131)
+|...+.+.+++=.+.++|...+.-.++ .+=|.--.++-.-|++++.||.+
T Consensus 170 y~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~ 222 (257)
T PF10192_consen 170 YDSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLS 222 (257)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666677889899999988 88898889999999999999985
No 28
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=37.90 E-value=52 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhhhhh---cChhHHHHHHHHHHHH
Q 032900 58 LTVFKSVQNVWDNSS---EDRLGLIGLGFAGIVA 88 (131)
Q Consensus 58 ~ei~k~lq~~Wd~~~---e~k~~~~~l~~~aiva 88 (131)
.++++.++++|.+.. ..+..+++.+++++++
T Consensus 6 ~~~~~~l~~~w~~l~~l~~~r~~~l~~~~~~~va 39 (552)
T PRK07193 6 NDMLDKLKQKWSPFQLLRGNRKLILLALLALLVA 39 (552)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHH
Confidence 478999999999831 2344444444444443
No 29
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=37.07 E-value=1.2e+02 Score=23.69 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhhhhcc
Q 032900 108 ALELIGILFSTWFVYRYLLF 127 (131)
Q Consensus 108 llELVGigYt~WF~yRyLlf 127 (131)
++-.-|++|+.||+|..=+.
T Consensus 109 L~gVf~lIWslYf~~~~~l~ 128 (137)
T PLN00092 109 LLGVFGLIWSLYFVYTSTLE 128 (137)
T ss_pred HHhHHHHHHHHHheeecccC
Confidence 34455778888888875443
No 30
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=36.58 E-value=1.2e+02 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhccCCchhh
Q 032900 77 GLIGLGFAGIVALWASVNLITA-IDKLPIIPNA 108 (131)
Q Consensus 77 ~~~~l~~~aival~~~~~vl~A-Id~iPLlp~l 108 (131)
.++|++ ..++++.+....+.. +|-+|++..+
T Consensus 187 R~~G~l-lmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 187 RFIGWL-LMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhceeech
Confidence 344433 344567777777766 4889998863
No 31
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=35.22 E-value=23 Score=25.25 Aligned_cols=21 Identities=33% Similarity=0.846 Sum_probs=18.2
Q ss_pred cCCchhhHHHHHHHHHHHHHh
Q 032900 102 LPIIPNALELIGILFSTWFVY 122 (131)
Q Consensus 102 iPLlp~llELVGigYt~WF~y 122 (131)
.|.+..++--||+.++.||..
T Consensus 18 fPhLttvLl~iG~fftAwFf~ 38 (79)
T KOG4452|consen 18 FPHLTTVLLGIGLFFTAWFFM 38 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 678888889999999999964
No 32
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=33.78 E-value=1.9e+02 Score=25.87 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHh--hccCCchhhHHHHHHHHHHHHHhhhhccCC
Q 032900 83 FAGIVALWASVNLITAI--DKLPIIPNALELIGILFSTWFVYRYLLFKP 129 (131)
Q Consensus 83 ~~aival~~~~~vl~AI--d~iPLlp~llELVGigYt~WF~yRyLlf~~ 129 (131)
+|.++++-++.-+...+ -.+|++..++-.++-...++|.+++-.++.
T Consensus 86 iGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 86 IGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhh
Confidence 34444444444444433 357899999999999999999998866553
No 33
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=32.50 E-value=2e+02 Score=21.29 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=29.6
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF 120 (131)
|++-...=||++-..++.-.+..+++..++++..+- |++++| +|+.|+.|=
T Consensus 14 EV~~~~~lK~s~gf~~~~~~il~~v~~~~sf~~Ls~---alk~ip--------vgvAYAiW~ 64 (106)
T COG2076 14 EVVGTTLLKYSDGFTRLWPSILTIVGYGLSFYLLSL---ALKTIP--------LGVAYAIWT 64 (106)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---HHhhCc--------hHHHHHHHH
Confidence 666666666665222333344455666666666554 555666 477777774
No 34
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=30.62 E-value=66 Score=20.30 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 032900 74 DRLGLIGLGFAGIVALWA 91 (131)
Q Consensus 74 ~k~~~~~l~~~aival~~ 91 (131)
|.-...++.+.++|++|+
T Consensus 22 nit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 22 NITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 555667778888888985
No 35
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=30.34 E-value=36 Score=22.65 Aligned_cols=16 Identities=38% Similarity=1.047 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhccCC
Q 032900 114 ILFSTWFVYRYLLFKP 129 (131)
Q Consensus 114 igYt~WF~yRyLlf~~ 129 (131)
+.|-.||+|+..+|..
T Consensus 24 ~~~F~~F~~Kqilfr~ 39 (54)
T PF06716_consen 24 LVVFIWFVYKQILFRN 39 (54)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4578899999998764
No 36
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=28.55 E-value=88 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHH
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWA 91 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~ 91 (131)
.+.+.++++|.++...+.++++.++++++++-+
T Consensus 7 ~~~~k~~~~~~~~~~~~ki~l~~~~~~~v~~~v 39 (545)
T COG1766 7 QLLKKLKEFWGKLTKKQKIVLLGAGAALVAVLV 39 (545)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 577889999999777777766666555555433
No 37
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=27.75 E-value=50 Score=23.45 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=19.3
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 102 LPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 102 iPLlp~llELVGigYt~WF~yRyLl 126 (131)
.|.+.-+|=.+|+.+++||......
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevt 40 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVT 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556667888999999999876555
No 38
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=27.63 E-value=1.6e+02 Score=22.49 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=47.4
Q ss_pred hHHHH-HHHHh--hhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHHHHHhhhhccC
Q 032900 59 TVFKS-VQNVW--DNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLLFK 128 (131)
Q Consensus 59 ei~k~-lq~~W--d~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigYt~WF~yRyLlf~ 128 (131)
.++.+ +.+.| -+ +.|..++++=++.+.+.+|+....... +..+. ...++=-+.++..=||.=||+.+.
T Consensus 41 tvvaY~iGDl~ILPr-~gN~~AtiaD~~La~~~iW~~~~~~~~-~~~~~~~~allsA~~i~v~E~fFH~yl~~~ 112 (136)
T PF10710_consen 41 TVVAYLIGDLFILPR-TGNIVATIADFGLAFLVIWLMGYILTG-NYVSIAWAALLSAVLIGVGEYFFHRYLLRN 112 (136)
T ss_pred HHHHHHHHHHheeeC-CCChhHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555 45544 22 567777777677778889999998887 44544 444555677888889999999864
No 39
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=26.31 E-value=2.5e+02 Score=21.99 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhhhhc
Q 032900 76 LGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 76 ~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yRyLl 126 (131)
....|++++..+..|.+..+.+-+|+.| .+|..|.++.+|-..+-++
T Consensus 128 li~~g~~i~i~~m~~~s~~~~~~~~~~p----~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 128 LLIFGLLLSIPIIVWGSTLILKLMDRFP----WIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 3456667777888999999999999998 5677888888887665543
No 40
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=26.17 E-value=2.1e+02 Score=27.41 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHHhhh
Q 032900 95 LITAIDKLPIIPNALELIGILFSTWFVYRY 124 (131)
Q Consensus 95 vl~AId~iPLlp~llELVGigYt~WF~yRy 124 (131)
+++-|-.+|.+|-++=-+++++.+|+.+|.
T Consensus 300 ~~~liPG~P~~~fl~la~~~~~~~~~~~~~ 329 (697)
T PRK06012 300 LLGLVPGMPHLPFLLLAGLLGFLAYRLRKR 329 (697)
T ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777777777667778899998775
No 41
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=25.42 E-value=1.4e+02 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=17.4
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhc
Q 032900 103 PIIPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 103 PLlp~llELVGigYt~WF~yRyLl 126 (131)
.+.=.++-++-++++.||.|||.-
T Consensus 58 gl~~a~~gl~~l~~si~~~fry~R 81 (183)
T PF12263_consen 58 GLFLAICGLVALFFSIFWSFRYTR 81 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777899999999963
No 42
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.26 E-value=68 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032900 76 LGLIGLGFAGIVALWASV 93 (131)
Q Consensus 76 ~~~~~l~~~aival~~~~ 93 (131)
|+++++++|+||++++.-
T Consensus 1 y~~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGR 18 (128)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 467777777777766543
No 43
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=25.09 E-value=1.6e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHH----HHHHHHHhhcc
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWA----SVNLITAIDKL 102 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~----~~~vl~AId~i 102 (131)
|+.+.+++..++..++. ..+ .+++.++++|. ..++-.++|++
T Consensus 65 ~~~~~v~~~l~~~~~~~-~~l-~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 65 ALAQTLKNTMNTAVDAR-TTV-GLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHhcc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555422222 111 23444555554 44555556655
No 44
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=24.86 E-value=1.4e+02 Score=27.28 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=25.3
Q ss_pred hhHHHHHHHHhhhhhcChhHHHHHHHHHHHH-HHHHHHHHHHhhccCCchh
Q 032900 58 LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVA-LWASVNLITAIDKLPIIPN 107 (131)
Q Consensus 58 ~ei~k~lq~~Wd~~~e~k~~~~~l~~~aiva-l~~~~~vl~AId~iPLlp~ 107 (131)
.++++.++++|.+....+...++.+++++++ +-+..-..+.=+..||+.+
T Consensus 6 ~~~~~~~~~~~~~l~~~qk~~l~~~~~~~v~~~~~l~~~~~~p~y~~Ly~~ 56 (542)
T PRK06007 6 KELMEKLKEFLQKLSKKRKIALIGAGAAVVAAIVALVLWASRPDYRVLYSN 56 (542)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHhhCCCCeeehhcC
Confidence 4678899999998444444444333333333 2222222333344455443
No 45
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=24.44 E-value=91 Score=21.94 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=19.3
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHH
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIV 87 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aiv 87 (131)
+..+.+++++|+ |.++.-.+ +.+++|+
T Consensus 35 ~ma~~M~~KfdK-Yw~~~~~~-l~ia~IL 61 (101)
T PF14372_consen 35 NMAKKMKEKFDK-YWKDCNLL-LAIATIL 61 (101)
T ss_pred HHHHHHHHHHHH-HHHHhHHH-HHHHHHh
Confidence 788899999999 66655444 5555554
No 46
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=23.20 E-value=2.3e+02 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhhhhc
Q 032900 108 ALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 108 llELVGigYt~WF~yRyLl 126 (131)
.+|+.+++|..+-.||.--
T Consensus 43 glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 43 GLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred HHHHHHHHHHHHHHHhhCc
Confidence 4699999999999888654
No 47
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=23.10 E-value=83 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 032900 109 LELIGILFSTWFVYRY 124 (131)
Q Consensus 109 lELVGigYt~WF~yRy 124 (131)
|=++|++|+.++.|.+
T Consensus 38 L~~vG~~~~~~~l~~~ 53 (55)
T cd00928 38 LTVVGTGYSLYLLYML 53 (55)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4468999999888765
No 48
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=22.69 E-value=1.9e+02 Score=20.35 Aligned_cols=14 Identities=0% Similarity=0.164 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHhhh
Q 032900 57 SLTVFKSVQNVWDN 70 (131)
Q Consensus 57 ~~ei~k~lq~~Wd~ 70 (131)
.+|+++++|+.|.+
T Consensus 15 g~~~~~~iK~li~k 28 (84)
T PF14242_consen 15 GEELVDKIKELIKK 28 (84)
T ss_pred HHHHHHHHHHHHHh
Confidence 46999999999987
No 49
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=22.43 E-value=1.9e+02 Score=26.69 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHH
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIV 87 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aiv 87 (131)
.+.+.++++|.++...+...++.++++++
T Consensus 7 ~~~~~~~~~~~~l~~~qk~~l~~~~~~vv 35 (555)
T TIGR00206 7 QFKVSAKEFFKKLSKVQKIALILAGFAII 35 (555)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 66778899999844334433333333333
No 50
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.33 E-value=84 Score=21.98 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhhh
Q 032900 58 LTVFKSVQNVWDN 70 (131)
Q Consensus 58 ~ei~k~lq~~Wd~ 70 (131)
+.+++.+|+.||.
T Consensus 7 P~lL~~lQnEWDa 19 (70)
T PF08606_consen 7 PSLLSTLQNEWDA 19 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999998
No 51
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=22.03 E-value=2.6e+02 Score=19.92 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhh
Q 032900 79 IGLGFAGIVALWASVNLITAIDKLPIIPNA 108 (131)
Q Consensus 79 ~~l~~~aival~~~~~vl~AId~iPLlp~l 108 (131)
+|+..--.++-|+...+=+-+++||++..+
T Consensus 11 iG~l~~~~~g~~l~~~~e~ll~riP~v~~i 40 (108)
T PF04367_consen 11 IGLLARNYFGKWLLNWLERLLQRIPLVKSI 40 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 344444455667776666778889985544
No 52
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=22.01 E-value=2.5e+02 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=35.7
Q ss_pred hcChhH-HHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhh
Q 032900 72 SEDRLG-LIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYR 123 (131)
Q Consensus 72 ~e~k~~-~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF~yR 123 (131)
++|.+. ..|.+++..+-.+.+..+.+.+|+.| .+|..|.++.+|-..+
T Consensus 131 t~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~p----~l~~~~~~~L~~ig~~ 179 (183)
T PF03741_consen 131 TDDFFIVITGNIISILLMRFLSFLLAKLLERFP----YLKYLAAAILGFIGVK 179 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345444 55677777778899999999999998 5677788877776544
No 53
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=21.58 E-value=3.2e+02 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=20.5
Q ss_pred HHHhhccCCchhhHHHHHHHHHHHHHhhh
Q 032900 96 ITAIDKLPIIPNALELIGILFSTWFVYRY 124 (131)
Q Consensus 96 l~AId~iPLlp~llELVGigYt~WF~yRy 124 (131)
++-|-.+|.+|=++=-.++++.+|+..|.
T Consensus 284 l~lvPG~P~~~fl~la~~~~~~~~~~~~~ 312 (678)
T TIGR01398 284 LALVPGLPTFPFLFLAGALAFLAWYLRRR 312 (678)
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 44556667777666666788899998775
No 54
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.72 E-value=3.2e+02 Score=19.34 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=13.2
Q ss_pred hHHHHHHHHhhhhhcChhH
Q 032900 59 TVFKSVQNVWDNSSEDRLG 77 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~ 77 (131)
.+-..++..|+..+.++-.
T Consensus 10 ~~~~~Lr~~c~~Lsp~~R~ 28 (85)
T PF13150_consen 10 RADDRLRRYCGRLSPKQRL 28 (85)
T ss_pred HHHHHHHHHHhcCCHHHHH
Confidence 4556788899987666444
No 55
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=20.29 E-value=3.5e+02 Score=19.72 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 032900 59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWF 120 (131)
Q Consensus 59 ei~k~lq~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPLlp~llELVGigYt~WF 120 (131)
|+.-...=++.+...++...+..+++..++.+..+- |.+++| +|+.|..|-
T Consensus 19 Ev~~t~~Lk~s~gf~~~~~~~~~~~~~~~sf~~Ls~---al~~lp--------vgvAYAvW~ 69 (109)
T PRK10650 19 EIVANIFLKFSDGFRRKIYGILSLAAVLAAFSALSQ---AVKGID--------LSVAYALWG 69 (109)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH---HHhhCc--------hHHHHHHHH
Confidence 444444444554223334344445555555555544 455677 466666664
Done!