Query 032900
Match_columns 131
No_of_seqs 127 out of 173
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kyh_A KVAP, voltage-gated pot 31.8 1.4E+02 0.0048 21.3 6.4 59 65-126 12-71 (147)
2 1ors_C Potassium channel; volt 28.8 1.4E+02 0.0049 20.5 6.2 46 82-127 11-57 (132)
3 2k1k_A Ephrin type-A receptor 24.2 1.1E+02 0.0036 17.8 3.7 12 78-89 13-24 (38)
4 2ks1_B Epidermal growth factor 11.2 1.8E+02 0.0063 17.5 2.5 16 116-131 29-44 (44)
5 2r9r_B Paddle chimera voltage 10.6 4.4E+02 0.015 22.3 5.6 23 105-127 237-259 (514)
6 2lx0_A Membrane fusion protein 10.2 1.9E+02 0.0066 16.4 2.2 11 117-127 21-31 (32)
7 1nvp_B Transcription initiatio 9.8 1.4E+02 0.0048 18.8 1.7 16 55-70 32-47 (57)
8 1nh2_B Transcription initiatio 9.7 1.4E+02 0.0049 18.5 1.7 16 55-70 28-43 (53)
9 1v54_J Cytochrome C oxidase po 9.4 1.6E+02 0.0055 18.6 1.9 13 111-123 40-52 (59)
10 2y69_J Cytochrome C oxidase po 9.0 1.6E+02 0.0056 19.8 1.9 14 111-124 61-74 (80)
No 1
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=31.76 E-value=1.4e+02 Score=21.34 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHHHHHhhhhc
Q 032900 65 QNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLL 126 (131)
Q Consensus 65 q~~Wd~~~e~k~~~~~l~~~aival~~~~~vl~AId~iPL-lp~llELVGigYt~WF~yRyLl 126 (131)
+..|+- .|+|.--..+. +++.+.+...++++...++- ....++.+-....+||+.-|++
T Consensus 12 ~~~~~~-~e~~~f~~~i~--~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~l 71 (147)
T 2kyh_A 12 RNIGDV-MEHPLVELGVS--YAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAY 71 (147)
T ss_dssp HHHHHH-HTCHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCchHHHHHH--HHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666 77766433322 33334455556666665542 3457888888888899887765
No 2
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=28.77 E-value=1.4e+02 Score=20.49 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHHHHHhhhhcc
Q 032900 82 GFAGIVALWASVNLITAIDKLPI-IPNALELIGILFSTWFVYRYLLF 127 (131)
Q Consensus 82 ~~~aival~~~~~vl~AId~iPL-lp~llELVGigYt~WF~yRyLlf 127 (131)
...+++.+-+...++++.+.++- ....++.+-...++||+.-|+++
T Consensus 11 ~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 11 GVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666777765542 46678889999999999988773
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.19 E-value=1.1e+02 Score=17.85 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 032900 78 LIGLGFAGIVAL 89 (131)
Q Consensus 78 ~~~l~~~aival 89 (131)
..|++++.++++
T Consensus 13 IAGiVvG~v~gv 24 (38)
T 2k1k_A 13 IVAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeeehHHHHHH
Confidence 344444444443
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=11.18 E-value=1.8e+02 Score=17.46 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=8.1
Q ss_pred HHHHHHhhhhccCCCC
Q 032900 116 FSTWFVYRYLLFKPDR 131 (131)
Q Consensus 116 Yt~WF~yRyLlf~~~R 131 (131)
-..||..|.--.++.|
T Consensus 29 ~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHTTTCCSCC
T ss_pred HHHHHHhhhhHhhccC
Confidence 3456666654444443
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=10.56 E-value=4.4e+02 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHhhhhcc
Q 032900 105 IPNALELIGILFSTWFVYRYLLF 127 (131)
Q Consensus 105 lp~llELVGigYt~WF~yRyLlf 127 (131)
....++.+-.+.++||+.-|+++
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR 259 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVR 259 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999877763
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.15 E-value=1.9e+02 Score=16.44 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=5.9
Q ss_pred HHHHHhhhhcc
Q 032900 117 STWFVYRYLLF 127 (131)
Q Consensus 117 t~WF~yRyLlf 127 (131)
-+++.++||-+
T Consensus 21 fgfwlfkylqk 31 (32)
T 2lx0_A 21 FGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 34455666644
No 7
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=9.80 E-value=1.4e+02 Score=18.82 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=13.4
Q ss_pred CchhhHHHHHHHHhhh
Q 032900 55 STSLTVFKSVQNVWDN 70 (131)
Q Consensus 55 ~~~~ei~k~lq~~Wd~ 70 (131)
..+.++++.+|+.|++
T Consensus 32 Gvde~vL~eLk~~We~ 47 (57)
T 1nvp_B 32 GVDEQVLMELKTLWEN 47 (57)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3457999999999997
No 8
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=9.74 E-value=1.4e+02 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.576 Sum_probs=13.6
Q ss_pred CchhhHHHHHHHHhhh
Q 032900 55 STSLTVFKSVQNVWDN 70 (131)
Q Consensus 55 ~~~~ei~k~lq~~Wd~ 70 (131)
..+.++++.+|..|+.
T Consensus 28 Gvde~vL~eLk~~We~ 43 (53)
T 1nh2_B 28 GIDEQTLQDLKNIWQK 43 (53)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4457999999999997
No 9
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=9.44 E-value=1.6e+02 Score=18.64 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhh
Q 032900 111 LIGILFSTWFVYR 123 (131)
Q Consensus 111 LVGigYt~WF~yR 123 (131)
++|++|+.++.+.
T Consensus 40 ~~g~~~~~y~l~~ 52 (59)
T 1v54_J 40 LGGTLYSLYCLGW 52 (59)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577888777665
No 10
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=8.99 E-value=1.6e+02 Score=19.82 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhh
Q 032900 111 LIGILFSTWFVYRY 124 (131)
Q Consensus 111 LVGigYt~WF~yRy 124 (131)
++|++|+.++.|.-
T Consensus 61 ~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 61 LGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888887653
Done!