Query 032901
Match_columns 130
No_of_seqs 103 out of 200
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 11:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032901.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032901hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nc8a_ g.40.1.1 (A:) HIV nucl 55.1 1.8 0.00013 23.6 0.8 11 18-28 4-14 (29)
2 d1zr9a1 g.37.1.4 (A:28-94) Zin 51.1 1.7 0.00012 27.3 0.3 15 68-82 14-28 (67)
3 d1ef4a_ a.4.11.1 (A:) RNA poly 47.7 2 0.00014 26.3 0.2 13 20-32 3-15 (55)
4 d1twfj_ a.4.11.1 (J:) RNA poly 46.2 2.4 0.00018 26.6 0.4 14 19-32 3-16 (65)
5 d3c7ba1 d.58.1.5 (A:239-304) D 31.2 3.1 0.00022 26.3 -1.0 16 20-35 47-62 (66)
6 d1cc1l_ e.18.1.1 (L:) Nickel-i 30.0 3.5 0.00026 32.3 -1.0 9 70-78 479-487 (487)
7 d1e3db_ e.18.1.1 (B:) Nickel-i 29.0 3.8 0.00027 32.6 -1.0 9 70-78 529-537 (537)
8 d1yq9h1 e.18.1.1 (H:7-536) Nic 27.9 4 0.00029 32.0 -1.0 9 70-78 522-530 (530)
9 d1frfl_ e.18.1.1 (L:) Nickel-i 27.2 4.3 0.00031 32.5 -1.0 9 70-78 535-543 (543)
10 d1wuil1 e.18.1.1 (L:19-552) Ni 26.4 4.5 0.00033 32.1 -1.0 9 70-78 526-534 (534)
11 d1x63a2 g.39.1.3 (A:45-76) Fou 25.8 6.2 0.00045 21.6 -0.2 9 69-77 20-28 (32)
12 d1twfl_ g.41.9.2 (L:) RBP12 su 24.1 9.4 0.00069 22.4 0.4 13 18-30 19-31 (46)
13 d1a1ia3 g.37.1.1 (A:160-187) Z 22.8 16 0.0012 19.4 1.2 14 18-31 1-14 (28)
14 d2v4ja1 d.58.1.5 (A:242-322) D 21.6 6 0.00043 25.7 -0.9 16 20-35 62-77 (81)
15 d2dkta2 g.93.1.1 (A:82-137) RI 20.2 17 0.0013 21.9 1.1 17 17-33 31-47 (56)
16 d2hyma2 b.1.2.1 (A:110-212) In 20.2 11 0.00081 25.4 0.2 19 59-77 58-76 (103)
No 1
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=55.08 E-value=1.8 Score=23.60 Aligned_cols=11 Identities=73% Similarity=1.310 Sum_probs=9.3
Q ss_pred cccEeccCccc
Q 032901 18 VKFIRCSNCGK 28 (130)
Q Consensus 18 v~~V~C~NCgr 28 (130)
-.+|.|-|||+
T Consensus 4 r~~ikCfNCGk 14 (29)
T d1nc8a_ 4 RKVIRCWNCGK 14 (29)
T ss_dssp CCCCBCTTTSC
T ss_pred cceeEeecCCc
Confidence 46899999997
No 2
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.07 E-value=1.7 Score=27.31 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=12.1
Q ss_pred eeeeeeeeceeccee
Q 032901 68 KMQYCVSCAIHSHVV 82 (130)
Q Consensus 68 Kl~YCVSCAIHskVV 82 (130)
-.+|||.|+-|..--
T Consensus 14 gqfYCv~C~K~F~se 28 (67)
T d1zr9a1 14 GLHRCLACARYFIDS 28 (67)
T ss_dssp GCSEETTTTEECSSH
T ss_pred CEEecccccCccCCH
Confidence 468999999987644
No 3
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=47.68 E-value=2 Score=26.33 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=11.4
Q ss_pred cEeccCccccccc
Q 032901 20 FIRCSNCGKCCPK 32 (130)
Q Consensus 20 ~V~C~NCgr~vPK 32 (130)
||||..||+.+--
T Consensus 3 PVRCFTCGkvia~ 15 (55)
T d1ef4a_ 3 PVRCLSCGKPVSA 15 (55)
T ss_dssp SSSCSCTTSCCHH
T ss_pred CcCcCCCchhHHH
Confidence 8999999998854
No 4
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.15 E-value=2.4 Score=26.65 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.9
Q ss_pred ccEeccCccccccc
Q 032901 19 KFIRCSNCGKCCPK 32 (130)
Q Consensus 19 ~~V~C~NCgr~vPK 32 (130)
-||||..||+.+--
T Consensus 3 IPVRCFTCgkvi~~ 16 (65)
T d1twfj_ 3 VPVRCFSCGKVVGD 16 (65)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCcccCCCCcChHH
Confidence 38999999998855
No 5
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=31.19 E-value=3.1 Score=26.28 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=12.6
Q ss_pred cEeccCccccccccee
Q 032901 20 FIRCSNCGKCCPKAIK 35 (130)
Q Consensus 20 ~V~C~NCgr~vPKAIK 35 (130)
=+||+.|=..||||++
T Consensus 47 CvRCMHCIN~MpkAL~ 62 (66)
T d3c7ba1 47 CVRCMHCINKMPKALK 62 (66)
T ss_dssp CCCCCHHHHHCTTTEE
T ss_pred cCccccchhcCccccC
Confidence 4678888888899875
No 6
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=30.04 E-value=3.5 Score=32.31 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.5
Q ss_pred eeeeeecee
Q 032901 70 QYCVSCAIH 78 (130)
Q Consensus 70 ~YCVSCAIH 78 (130)
-=|+|||.|
T Consensus 479 DPCisCa~H 487 (487)
T d1cc1l_ 479 DPCLGCAVH 487 (487)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 459999998
No 7
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=29.04 E-value=3.8 Score=32.56 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=6.9
Q ss_pred eeeeeecee
Q 032901 70 QYCVSCAIH 78 (130)
Q Consensus 70 ~YCVSCAIH 78 (130)
-=|+|||.|
T Consensus 529 DPC~sCa~H 537 (537)
T d1e3db_ 529 DPCIACSTH 537 (537)
T ss_dssp CCBHHHHHC
T ss_pred Ccccccccc
Confidence 348888888
No 8
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=27.91 E-value=4 Score=32.01 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=6.6
Q ss_pred eeeeeecee
Q 032901 70 QYCVSCAIH 78 (130)
Q Consensus 70 ~YCVSCAIH 78 (130)
-=|+|||+|
T Consensus 522 DPC~sCa~H 530 (530)
T d1yq9h1 522 DPCIACGVH 530 (530)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 348888887
No 9
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=27.18 E-value=4.3 Score=32.49 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=6.9
Q ss_pred eeeeeecee
Q 032901 70 QYCVSCAIH 78 (130)
Q Consensus 70 ~YCVSCAIH 78 (130)
-=|+|||.|
T Consensus 535 DPC~sCa~H 543 (543)
T d1frfl_ 535 DPCIACGVH 543 (543)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 348888888
No 10
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=26.35 E-value=4.5 Score=32.14 Aligned_cols=9 Identities=33% Similarity=1.279 Sum_probs=7.3
Q ss_pred eeeeeecee
Q 032901 70 QYCVSCAIH 78 (130)
Q Consensus 70 ~YCVSCAIH 78 (130)
-=|+||++|
T Consensus 526 DPCisCa~H 534 (534)
T d1wuil1 526 DPCIACGVH 534 (534)
T ss_dssp CCBHHHHHC
T ss_pred CCccccccc
Confidence 459999988
No 11
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.85 E-value=6.2 Score=21.61 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.5
Q ss_pred eeeeeeece
Q 032901 69 MQYCVSCAI 77 (130)
Q Consensus 69 l~YCVSCAI 77 (130)
-.|||+|--
T Consensus 20 d~ycvtche 28 (32)
T d1x63a2 20 DFYCVTCHE 28 (32)
T ss_dssp EEEEHHHHH
T ss_pred cEEEEEeec
Confidence 568999843
No 12
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.07 E-value=9.4 Score=22.45 Aligned_cols=13 Identities=31% Similarity=0.902 Sum_probs=10.5
Q ss_pred cccEeccCccccc
Q 032901 18 VKFIRCSNCGKCC 30 (130)
Q Consensus 18 v~~V~C~NCgr~v 30 (130)
..+|+|-+||--+
T Consensus 19 ~d~irCreCG~RI 31 (46)
T d1twfl_ 19 TDAVRCKDCGHRI 31 (46)
T ss_dssp TSTTCCSSSCCCC
T ss_pred CCcEEeccCCcEE
Confidence 3689999999754
No 13
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.77 E-value=16 Score=19.43 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=10.6
Q ss_pred cccEeccCcccccc
Q 032901 18 VKFIRCSNCGKCCP 31 (130)
Q Consensus 18 v~~V~C~NCgr~vP 31 (130)
++|..|+-||+-.-
T Consensus 1 EkPf~C~~CgrkFA 14 (28)
T d1a1ia3 1 EKPFACDICGRKFA 14 (28)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCcccchhhhhhh
Confidence 36788999998543
No 14
>d2v4ja1 d.58.1.5 (A:242-322) DsrA insert domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=21.59 E-value=6 Score=25.75 Aligned_cols=16 Identities=31% Similarity=0.850 Sum_probs=11.6
Q ss_pred cEeccCccccccccee
Q 032901 20 FIRCSNCGKCCPKAIK 35 (130)
Q Consensus 20 ~V~C~NCgr~vPKAIK 35 (130)
=+||+.|=-.||||++
T Consensus 62 C~RCMHCINvMPkALr 77 (81)
T d2v4ja1 62 CVRCMHCINTMPRALH 77 (81)
T ss_dssp CCCCSHHHHHCTTTEE
T ss_pred cccCcCchhhCccccC
Confidence 3567777777898875
No 15
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.25 E-value=17 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=14.5
Q ss_pred ccccEeccCcccccccc
Q 032901 17 HVKFIRCSNCGKCCPKA 33 (130)
Q Consensus 17 hv~~V~C~NCgr~vPKA 33 (130)
...+.||+.|+-|+++.
T Consensus 31 ~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp GGGEEEETTTTEEEEGG
T ss_pred CccccccCccccccCcc
Confidence 45899999999999873
No 16
>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.20 E-value=11 Score=25.39 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=16.1
Q ss_pred ccccceeeeeeeeeeeece
Q 032901 59 GYTLPKLYAKMQYCVSCAI 77 (130)
Q Consensus 59 ~y~lPKlyvKl~YCVSCAI 77 (130)
.|+|-||.=+..||||=-+
T Consensus 58 tyVidkLiPnTnYCVSvYf 76 (103)
T d2hyma2 58 TYIIDKLIPNTNYCVSVYL 76 (103)
T ss_dssp EEEEECCCSSCEEEEEEEE
T ss_pred EEEhhHhCCCCceEEEEEE
Confidence 4889999999999999654
Done!