Query 032902
Match_columns 130
No_of_seqs 118 out of 1147
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10254 thioesterase; Provisi 99.9 3.1E-22 6.6E-27 143.4 12.2 80 48-127 25-104 (137)
2 PRK10293 acyl-CoA esterase; Pr 99.9 3.7E-22 8E-27 142.7 11.1 81 47-127 24-104 (136)
3 PLN02322 acyl-CoA thioesterase 99.8 3.8E-20 8.1E-25 135.0 11.0 81 47-128 16-97 (154)
4 PRK11688 hypothetical protein; 99.8 1.1E-19 2.4E-24 131.8 12.4 103 11-128 6-123 (154)
5 COG2050 PaaI HGG motif-contain 99.8 1.2E-19 2.5E-24 129.6 9.9 82 47-128 24-105 (141)
6 TIGR00369 unchar_dom_1 unchara 99.8 5.9E-19 1.3E-23 121.8 10.8 81 47-127 6-86 (117)
7 KOG3328 HGG motif-containing t 99.8 1.5E-18 3.2E-23 124.8 8.8 83 40-125 22-104 (148)
8 TIGR02286 PaaD phenylacetic ac 99.8 1.3E-17 2.9E-22 114.8 10.6 79 47-128 4-83 (114)
9 TIGR02447 yiiD_Cterm thioester 99.7 4.3E-16 9.2E-21 111.4 10.9 79 47-127 12-93 (138)
10 cd03443 PaaI_thioesterase PaaI 99.6 6.2E-14 1.4E-18 94.6 11.3 81 48-128 3-83 (113)
11 PF14539 DUF4442: Domain of un 99.5 4.7E-13 1E-17 94.9 10.2 80 47-127 19-98 (132)
12 PRK10694 acyl-CoA esterase; Pr 99.3 4.1E-11 8.9E-16 85.4 9.2 72 55-128 8-81 (133)
13 cd03442 BFIT_BACH Brown fat-in 99.2 2.8E-10 6E-15 77.6 9.5 72 54-127 3-76 (123)
14 COG1607 Acyl-CoA hydrolase [Li 99.0 2.5E-09 5.4E-14 78.3 9.6 71 55-127 10-82 (157)
15 PF03061 4HBT: Thioesterase su 99.0 4.8E-09 1E-13 66.2 7.6 55 73-127 1-56 (79)
16 KOG4781 Uncharacterized conser 98.9 1.7E-08 3.6E-13 77.6 9.6 73 51-124 119-191 (237)
17 PRK04424 fatty acid biosynthes 98.8 9.1E-08 2E-12 71.5 10.1 73 50-127 76-151 (185)
18 cd00556 Thioesterase_II Thioes 98.7 3.9E-08 8.5E-13 64.7 5.7 54 73-127 14-68 (99)
19 PLN02647 acyl-CoA thioesterase 98.6 3.9E-07 8.4E-12 76.3 11.2 70 53-124 285-355 (437)
20 cd00586 4HBT 4-hydroxybenzoyl- 98.3 6.5E-06 1.4E-10 53.6 8.0 70 60-129 2-79 (110)
21 PLN02647 acyl-CoA thioesterase 98.2 1.1E-05 2.3E-10 67.7 9.4 80 49-128 78-171 (437)
22 cd03440 hot_dog The hotdog fol 98.2 3.7E-05 7.9E-10 46.9 9.2 67 61-127 3-70 (100)
23 PF09500 YiiD_Cterm: Putative 98.1 4.1E-05 8.9E-10 55.4 10.1 78 47-127 18-99 (144)
24 KOG2763 Acyl-CoA thioesterase 97.4 0.00083 1.8E-08 55.0 8.0 72 53-126 194-266 (357)
25 TIGR00051 acyl-CoA thioester h 96.7 0.01 2.2E-07 39.5 7.1 66 63-128 2-75 (117)
26 TIGR02799 thio_ybgC tol-pal sy 96.7 0.012 2.6E-07 40.0 7.5 68 61-128 3-79 (126)
27 PF13622 4HBT_3: Thioesterase- 96.3 0.016 3.5E-07 44.2 6.6 50 73-127 9-58 (255)
28 PRK10800 acyl-CoA thioesterase 96.2 0.076 1.6E-06 36.6 9.0 68 60-127 4-79 (130)
29 cd03449 R_hydratase (R)-hydrat 95.6 0.058 1.3E-06 36.5 6.3 52 72-128 44-96 (128)
30 cd03445 Thioesterase_II_repeat 95.4 0.094 2E-06 34.8 6.7 49 72-126 14-63 (94)
31 COG0824 FcbC Predicted thioest 94.2 0.34 7.4E-06 34.2 7.4 66 58-123 5-77 (137)
32 PRK07531 bifunctional 3-hydrox 93.9 0.46 1E-05 40.4 8.8 68 56-123 343-416 (495)
33 PF13279 4HBT_2: Thioesterase- 93.9 0.56 1.2E-05 31.4 7.7 61 66-127 2-69 (121)
34 cd03441 R_hydratase_like (R)-h 93.4 0.33 7.2E-06 32.5 5.9 52 72-127 41-93 (127)
35 COG4109 Predicted transcriptio 92.8 1.1 2.4E-05 37.3 8.9 80 40-124 317-396 (432)
36 PRK00006 fabZ (3R)-hydroxymyri 91.7 3.3 7.1E-05 29.0 9.4 73 50-122 27-108 (147)
37 PF01575 MaoC_dehydratas: MaoC 89.7 2.5 5.5E-05 28.7 7.1 52 72-127 49-101 (122)
38 COG5496 Predicted thioesterase 88.7 6.9 0.00015 27.9 8.8 52 73-124 28-79 (130)
39 cd03455 SAV4209 SAV4209 is a S 87.7 3.3 7.2E-05 28.1 6.6 48 75-128 45-93 (123)
40 cd03447 FAS_MaoC FAS_MaoC, the 87.3 3.7 8E-05 28.4 6.7 50 74-127 43-93 (126)
41 cd03453 SAV4209_like SAV4209_l 86.8 3.2 7E-05 28.3 6.2 49 74-128 45-94 (127)
42 cd01288 FabZ FabZ is a 17kD be 86.5 7.7 0.00017 26.1 9.4 73 50-122 12-94 (131)
43 cd03446 MaoC_like MoaC_like 82.7 3.7 8.1E-05 28.2 5.0 52 74-128 51-104 (140)
44 PLN02868 acyl-CoA thioesterase 79.2 7.7 0.00017 32.1 6.5 64 48-120 135-198 (413)
45 cd03450 NodN NodN (nodulation 77.2 5.3 0.00011 28.6 4.4 51 74-127 57-110 (149)
46 cd03448 HDE_HSD HDE_HSD The R 77.1 11 0.00023 26.0 5.8 45 74-122 45-89 (122)
47 cd03454 YdeM YdeM is a Bacillu 76.0 11 0.00023 26.0 5.7 51 75-128 50-102 (140)
48 TIGR00189 tesB acyl-CoA thioes 75.7 28 0.00061 26.7 8.4 70 57-127 165-239 (271)
49 cd03452 MaoC_C MaoC_C The C-t 73.2 9 0.0002 26.8 4.7 49 74-127 51-101 (142)
50 COG1946 TesB Acyl-CoA thioeste 72.7 3.6 7.8E-05 33.1 2.8 69 58-127 177-251 (289)
51 cd03444 Thioesterase_II_repeat 70.6 28 0.00061 23.1 6.9 53 74-126 15-72 (104)
52 PRK08190 bifunctional enoyl-Co 70.1 23 0.00049 30.1 7.2 50 74-128 59-109 (466)
53 TIGR00189 tesB acyl-CoA thioes 69.7 9.2 0.0002 29.4 4.5 41 74-120 21-61 (271)
54 cd03451 FkbR2 FkbR2 is a Strep 68.2 11 0.00024 25.9 4.2 50 73-127 53-104 (146)
55 PRK13691 (3R)-hydroxyacyl-ACP 62.1 30 0.00065 25.2 5.7 23 106-128 87-110 (166)
56 TIGR01750 fabZ beta-hydroxyacy 61.6 49 0.0011 22.6 8.7 74 50-123 20-105 (140)
57 PRK13693 (3R)-hydroxyacyl-ACP 56.2 59 0.0013 22.8 6.2 41 73-119 54-94 (142)
58 cd00493 FabA_FabZ FabA/Z, beta 54.0 62 0.0013 21.4 9.4 73 50-122 11-95 (131)
59 PF13452 MaoC_dehydrat_N: N-te 53.0 20 0.00044 24.2 3.4 28 102-129 74-102 (132)
60 PRK13188 bifunctional UDP-3-O- 52.2 1.5E+02 0.0033 25.4 9.9 74 50-123 341-423 (464)
61 PLN02864 enoyl-CoA hydratase 48.1 48 0.001 26.6 5.2 46 74-123 228-273 (310)
62 PRK10526 acyl-CoA thioesterase 47.6 42 0.00091 26.5 4.7 61 49-120 12-72 (286)
63 PRK13692 (3R)-hydroxyacyl-ACP 47.4 30 0.00065 24.9 3.6 22 106-127 87-109 (159)
64 PRK10526 acyl-CoA thioesterase 42.3 83 0.0018 24.7 5.7 64 61-125 180-249 (286)
65 COG2030 MaoC Acyl dehydratase 41.9 91 0.002 22.3 5.4 50 75-127 69-119 (159)
66 PF11293 DUF3094: Protein of u 41.7 25 0.00055 21.3 2.0 20 8-27 2-21 (55)
67 KOG2763 Acyl-CoA thioesterase 41.4 1.1E+02 0.0024 25.5 6.3 55 65-119 15-78 (357)
68 PF11985 DUF3486: Protein of u 35.8 32 0.0007 25.2 2.3 27 1-27 1-27 (180)
69 COG3510 CmcI Cephalosporin hyd 33.1 23 0.0005 27.4 1.1 49 64-118 67-115 (237)
70 TIGR02278 PaaN-DH phenylacetic 28.5 1.2E+02 0.0026 27.1 4.9 48 75-127 575-624 (663)
71 PF13622 4HBT_3: Thioesterase- 28.3 81 0.0017 23.7 3.4 67 56-127 154-224 (255)
72 PLN02868 acyl-CoA thioesterase 27.3 1.3E+02 0.0028 24.8 4.8 67 59-126 311-381 (413)
73 PF07977 FabA: FabA-like domai 21.5 2.7E+02 0.0059 18.9 11.3 71 50-120 12-101 (138)
No 1
>PRK10254 thioesterase; Provisional
Probab=99.89 E-value=3.1e-22 Score=143.39 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=76.1
Q ss_pred CeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEeee
Q 032902 48 HIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCGC 127 (130)
Q Consensus 48 gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~~ 127 (130)
|+++.++++|+++++|+++++++|++|.+|||++++|+|+++++++....+.+..++|+|+++|||||++.|..+|++.+
T Consensus 25 Gi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g~l~a~a~v 104 (137)
T PRK10254 25 GIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEGKVRGVCQP 104 (137)
T ss_pred CcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999998777778889999999999999999998898875
No 2
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.88 E-value=3.7e-22 Score=142.70 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEee
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCG 126 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~ 126 (130)
+|+++.++++|+++++|+++|+|+|++|.+|||++++|+|+++++++.+..+.+..++|+|+++||++|++.|+.+|++.
T Consensus 24 LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g~l~a~a~ 103 (136)
T PRK10293 24 LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVCK 103 (136)
T ss_pred cCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCceEEEEEE
Confidence 39999999999999999999999999999999999999999999998887666778899999999999999999889887
Q ss_pred e
Q 032902 127 C 127 (130)
Q Consensus 127 ~ 127 (130)
+
T Consensus 104 v 104 (136)
T PRK10293 104 P 104 (136)
T ss_pred E
Confidence 5
No 3
>PLN02322 acyl-CoA thioesterase
Probab=99.83 E-value=3.8e-20 Score=134.96 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe-EEEEe
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW-KKCDC 125 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~-~~~~~ 125 (130)
+|+++.++++|+++++++++++|+|++|.+|||++++|+|+++++++... ..+..++|+++++|||+|++.|+ .++++
T Consensus 16 LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~-~~~~~~vTiel~infLrpa~~G~~L~Aea 94 (154)
T PLN02322 16 LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMA-SGFKRVAGIQLSINHLKSADLGDLVFAEA 94 (154)
T ss_pred CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhc-cCCCceEEEEEEEEEeccCCCCCEEEEEE
Confidence 49999999999999999999999999999999999999999999887653 23456899999999999999995 77887
Q ss_pred eee
Q 032902 126 GCS 128 (130)
Q Consensus 126 ~~~ 128 (130)
.+-
T Consensus 95 ~vv 97 (154)
T PLN02322 95 TPV 97 (154)
T ss_pred EEE
Confidence 763
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=131.77 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCCCCchhhhhcCCeEEEEEeCCeEEEEEEcCCCccC--CCCCCcHHHHHHHHHHH
Q 032902 11 DPEDVSKVIVFLKEVGASSSIPDDCCTNDSYSNILGRHIKVHKIQRGRLICHLSVKPAILN--FFGGIHGGAIAAFSERM 88 (130)
Q Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gi~i~~~~~g~v~~~l~v~~~~~N--~~G~vHGG~iatl~D~a 88 (130)
++|..+.+++++.... + |..++ |+++.++++|.++++|+++++|+| +.|.+|||+++||+|++
T Consensus 6 ~~~~~~~~~~~~~~~~------------p-f~~~l--G~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a 70 (154)
T PRK11688 6 QEEALKLVGEIFVYHM------------P-FNRLL--GLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVA 70 (154)
T ss_pred HHHHHHHHHHHHHhcC------------C-HHHHh--CcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHH
Confidence 3556666666553221 1 33443 999999999999999999999985 68999999999999999
Q ss_pred HHHHHHhhccC-------------CCceeEEEEEEEeecCCCCCeEEEEeeee
Q 032902 89 AIACARTVVAE-------------DKEIFLGELGISYLSAAPHNWKKCDCGCS 128 (130)
Q Consensus 89 ~g~a~~~~~~~-------------~~~~~T~~l~i~fl~p~~~g~~~~~~~~~ 128 (130)
+++++++.... ...++|++|+++||||++.+..++++++.
T Consensus 71 ~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~g~~l~a~a~v~ 123 (154)
T PRK11688 71 GGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGRGERFTATSSVL 123 (154)
T ss_pred HHHHHHhhcccccccccccccccccccceEEEEEEEeeccCCCCeEEEEEEEE
Confidence 99998764321 12468999999999999866677888764
No 5
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=1.2e-19 Score=129.62 Aligned_cols=82 Identities=26% Similarity=0.320 Sum_probs=77.4
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEee
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCG 126 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~ 126 (130)
.|+++.++++|+++++|++++++.|++|++|||++++|+|.++++++....+.....+|+++|+||+||++.|+.+++|+
T Consensus 24 lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~v~a~a~ 103 (141)
T COG2050 24 LGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGDVTAEAR 103 (141)
T ss_pred cCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCeEEEEEE
Confidence 39999999999999999999999999999999999999999999999998877777799999999999999999889988
Q ss_pred ee
Q 032902 127 CS 128 (130)
Q Consensus 127 ~~ 128 (130)
+.
T Consensus 104 v~ 105 (141)
T COG2050 104 VL 105 (141)
T ss_pred EE
Confidence 74
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.80 E-value=5.9e-19 Score=121.84 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEee
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCG 126 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~ 126 (130)
+|+++.++++|++++++++.|+++|+.|.+|||++++++|.++++++......++.++|++++|+|+||++.|+..++++
T Consensus 6 lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g~l~a~a~ 85 (117)
T TIGR00369 6 LGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREGKVRAIAQ 85 (117)
T ss_pred cCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCCEEEEEEE
Confidence 49999999999999999999999999999999999999999998887766667778899999999999999997778777
Q ss_pred e
Q 032902 127 C 127 (130)
Q Consensus 127 ~ 127 (130)
+
T Consensus 86 v 86 (117)
T TIGR00369 86 V 86 (117)
T ss_pred E
Confidence 5
No 7
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=124.79 Aligned_cols=83 Identities=28% Similarity=0.321 Sum_probs=72.9
Q ss_pred chhhhhcCCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCC
Q 032902 40 SYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (130)
Q Consensus 40 ~~~~~i~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g 119 (130)
|++.+ .++++..+++|+++|+|+|+++|+|++|++|||++|||+|..+++++... ......+.+||+|+||+|++.|
T Consensus 22 Fd~~~--~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~-~~~~~gvsvdLsvsyL~~AklG 98 (148)
T KOG3328|consen 22 FDRVL--NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT-SGFKPGVSVDLSVSYLSSAKLG 98 (148)
T ss_pred hhhhc--CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc-cCCCCceEEEEEhhhccccCCC
Confidence 44443 69999999999999999999999999999999999999999999986655 4556778899999999999999
Q ss_pred eEEEEe
Q 032902 120 WKKCDC 125 (130)
Q Consensus 120 ~~~~~~ 125 (130)
+.+.+.
T Consensus 99 e~l~i~ 104 (148)
T KOG3328|consen 99 EELEIE 104 (148)
T ss_pred CeEEEE
Confidence 977543
No 8
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.75 E-value=1.3e-17 Score=114.77 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=69.2
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe-EEEEe
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW-KKCDC 125 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~-~~~~~ 125 (130)
.|+++.++++|+++++++++++|.|+.|.+|||++++++|.++++++... +...+|++++++|++|++.|+ .++++
T Consensus 4 lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~---~~~~~t~~~~i~f~rp~~~G~~l~~~a 80 (114)
T TIGR02286 4 LGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY---GDAAVAAQCTIDFLRPGRAGERLEAEA 80 (114)
T ss_pred cCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC---CCceEEEEEEEEEecCCCCCCEEEEEE
Confidence 39999999999999999999999999999999999999999988776432 334679999999999999996 55777
Q ss_pred eee
Q 032902 126 GCS 128 (130)
Q Consensus 126 ~~~ 128 (130)
.|-
T Consensus 81 ~v~ 83 (114)
T TIGR02286 81 VEV 83 (114)
T ss_pred EEE
Confidence 763
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.68 E-value=4.3e-16 Score=111.37 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHh---hccCCCceeEEEEEEEeecCCCCCeEEE
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACART---VVAEDKEIFLGELGISYLSAAPHNWKKC 123 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~---~~~~~~~~~T~~l~i~fl~p~~~g~~~~ 123 (130)
+|+++.++++|+++++++++++ .|+.|++|||+++||+|.++..++.. ....+..++|++++|+|++|++.+ .++
T Consensus 12 lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~-~~a 89 (138)
T TIGR02447 12 MGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD-PVA 89 (138)
T ss_pred cCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC-eEE
Confidence 4999999999999999999997 89999999999999999876654422 223345789999999999999875 555
Q ss_pred Eeee
Q 032902 124 DCGC 127 (130)
Q Consensus 124 ~~~~ 127 (130)
+|.+
T Consensus 90 ~~~~ 93 (138)
T TIGR02447 90 NCEA 93 (138)
T ss_pred EEEc
Confidence 5554
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.57 E-value=6.2e-14 Score=94.59 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=72.3
Q ss_pred CeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEeee
Q 032902 48 HIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCGC 127 (130)
Q Consensus 48 gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~~ 127 (130)
++.+.+++++.+++++++.++++|+.|.+|||++++++|.+++..+....+.+....+.+++++|++|++.++.++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~~~v~~~~~v 82 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGGDLTARARV 82 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCCCeEEEEEEE
Confidence 78889999999999999999999999999999999999999999888765556677899999999999999666677665
Q ss_pred e
Q 032902 128 S 128 (130)
Q Consensus 128 ~ 128 (130)
.
T Consensus 83 ~ 83 (113)
T cd03443 83 V 83 (113)
T ss_pred E
Confidence 4
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.48 E-value=4.7e-13 Score=94.90 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEee
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCG 126 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~ 126 (130)
.|+++.++++++++++++..+...|+.|++|||++++++|.++++.+...++.+..+...+++++|++|++.+ ..++|+
T Consensus 19 ~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g~-v~a~~~ 97 (132)
T PF14539_consen 19 AGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARGD-VTATAE 97 (132)
T ss_dssp CT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S--EEEEEE
T ss_pred ceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCCc-EEEEEE
Confidence 5999999999999999999999999999999999999999999999988888776666789999999997654 666665
Q ss_pred e
Q 032902 127 C 127 (130)
Q Consensus 127 ~ 127 (130)
.
T Consensus 98 ~ 98 (132)
T PF14539_consen 98 L 98 (132)
T ss_dssp -
T ss_pred c
Confidence 4
No 12
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.27 E-value=4.1e-11 Score=85.35 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=62.0
Q ss_pred eCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEE-EEEeecCCCCCeEE-EEeeee
Q 032902 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 55 ~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l-~i~fl~p~~~g~~~-~~~~~~ 128 (130)
.++.+++...+.|+++|++|.+|||.++.++|.++++++... .+..++|+.+ .++|++|++.||.+ +.+++.
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~--~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~ 81 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI--AHGRVVTVRVEGMTFLRPVAVGDVVCCYARCV 81 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH--cCCceEEEEECceEECCCcccCcEEEEEEEEE
Confidence 477889999999999999999999999999999999998754 2446889999 77999999999988 555553
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.18 E-value=2.8e-10 Score=77.56 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=59.6
Q ss_pred EeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEE-EEEeecCCCCCeEE-EEeee
Q 032902 54 IQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 54 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l-~i~fl~p~~~g~~~-~~~~~ 127 (130)
++++.+++++++.++++|+.|.+|||.+++++|.+++.++.... +....|+.+ +++|++|++.|+.+ ..+.+
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~--~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v 76 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA--GGRVVTASVDRIDFLKPVRVGDVVELSARV 76 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh--CCcEEEEEECceEEcCccccCcEEEEEEEE
Confidence 35889999999999999999999999999999999988766432 234567778 79999999999865 45544
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.03 E-value=2.5e-09 Score=78.26 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=61.4
Q ss_pred eCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEE-EEEeecCCCCCeEE-EEeee
Q 032902 55 QRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 55 ~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l-~i~fl~p~~~g~~~-~~~~~ 127 (130)
.++.+.++..+-|...|+.|.+|||.+++++|.++++++.... +..++|+.+ +++|++|++.||.+ |.++|
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a--~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v 82 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHA--GGRVVTASVDSVDFKKPVRVGDIVCLYARV 82 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHh--CCeEEEEEeceEEEccccccCcEEEEEEEE
Confidence 3677889999999999999999999999999999999988763 347889888 89999999999987 44544
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.96 E-value=4.8e-09 Score=66.23 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=46.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
+|.+|||.+++++|.++..+.......+...++++++++|++|++.|+.+ +.+++
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v 56 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARV 56 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEE
Confidence 59999999999999999999988766556788999999999999999644 55544
No 16
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.7e-08 Score=77.62 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=64.9
Q ss_pred EEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEE
Q 032902 51 VHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCD 124 (130)
Q Consensus 51 i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~ 124 (130)
+.+.+.+..++-+.+.++++++-|.+|||+|+|++|.++.++++...+ .+..+|.+|+++|.+|++....+.+
T Consensus 119 Fyd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~p-nk~~vTanLsisy~~pip~~~f~vi 191 (237)
T KOG4781|consen 119 FYDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALP-NKIGVTANLSISYKRPIPTNHFVVI 191 (237)
T ss_pred EEecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCC-chhheeeecccccCCCcccceEEEE
Confidence 346678999999999999999999999999999999999999998765 5567899999999999999876654
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.77 E-value=9.1e-08 Score=71.55 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=59.0
Q ss_pred EEEEEeCC-eEEEEEEcCCCcc-CCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEee
Q 032902 50 KVHKIQRG-RLICHLSVKPAIL-NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCG 126 (130)
Q Consensus 50 ~i~~~~~g-~v~~~l~v~~~~~-N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~ 126 (130)
++.++++| +++..+.++.++. |..+.+|||++++++|.++.++ . .+..+++...+++|++|+++||.+ +++.
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~--~~~~~~~~i~~irF~kPV~pGD~L~~ea~ 150 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I--DAELALTGVANIRFKRPVKLGERVVAKAE 150 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c--CCcEEEEEeeeEEEccCCCCCCEEEEEEE
Confidence 67788999 7999999999998 9999999999999999864332 1 344466778899999999999866 4444
Q ss_pred e
Q 032902 127 C 127 (130)
Q Consensus 127 ~ 127 (130)
+
T Consensus 151 v 151 (185)
T PRK04424 151 V 151 (185)
T ss_pred E
Confidence 3
No 18
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.70 E-value=3.9e-08 Score=64.72 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe-EEEEeee
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW-KKCDCGC 127 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~-~~~~~~~ 127 (130)
.+.+|||++++++|.+++.++....+ .....|++++++|++|++.++ .++++++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~-~~~~~t~~~~i~F~~~~~~~~~~~~~~~~ 68 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG-ASGFASLDHHIYFHRPGDADEWLLYEVES 68 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC-CCCeeeeEEEEEEcCCCCCCccEEEEEEe
Confidence 79999999999999999988775433 445689999999999999965 5577665
No 19
>PLN02647 acyl-CoA thioesterase
Probab=98.64 E-value=3.9e-07 Score=76.29 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=60.4
Q ss_pred EEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEE-EEEeecCCCCCeEEEE
Q 032902 53 KIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNWKKCD 124 (130)
Q Consensus 53 ~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l-~i~fl~p~~~g~~~~~ 124 (130)
.+.+-++.....+.|++.|.+|.+|||.++..+|.++++++.... +..++|+.+ .++|++|++.|+.++.
T Consensus 285 ~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a--~~~~vt~svd~v~F~~PV~vGdil~l 355 (437)
T PLN02647 285 LIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFA--GLRPYFLEVDHVDFLRPVDVGDFLRF 355 (437)
T ss_pred eccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHc--CCceEEEEecceEecCccccCcEEEE
Confidence 345677888899999999999999999999999999998887652 345788888 8999999999998864
No 20
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.29 E-value=6.5e-06 Score=53.61 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred EEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc-------cCCCceeEEEEEEEeecCCCCCeEE-EEeeeee
Q 032902 60 ICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNWKK-CDCGCSG 129 (130)
Q Consensus 60 ~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~-------~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~~ 129 (130)
+.++++.+.++|..|.+|+|.+.+++|.+......... ..+....+.+.+++|++|++.|+.+ +.+.+.+
T Consensus 2 ~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~ 79 (110)
T cd00586 2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLR 79 (110)
T ss_pred cEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEe
Confidence 35678899999999999999999999999887665432 2345567889999999999999855 5555543
No 21
>PLN02647 acyl-CoA thioesterase
Probab=98.20 E-value=1.1e-05 Score=67.70 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=62.4
Q ss_pred eEEEEEeCCeEEEEEEcCCCc------cCCCCCCcHHHHHHHHHHHHHHHHHhhccCC------CceeEEEE-EEEeecC
Q 032902 49 IKVHKIQRGRLICHLSVKPAI------LNFFGGIHGGAIAAFSERMAIACARTVVAED------KEIFLGEL-GISYLSA 115 (130)
Q Consensus 49 i~i~~~~~g~v~~~l~v~~~~------~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~------~~~~T~~l-~i~fl~p 115 (130)
+......+.++.+..++.++. .|++|.+|||-|+..+|.++++++..+...+ ..++|+.+ +|+|++|
T Consensus 78 L~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~P 157 (437)
T PLN02647 78 LLTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKP 157 (437)
T ss_pred ccccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCC
Confidence 333455678888999655554 9999999999999999999999988764321 15789888 8999999
Q ss_pred CCCCeEEE-Eeeee
Q 032902 116 APHNWKKC-DCGCS 128 (130)
Q Consensus 116 ~~~g~~~~-~~~~~ 128 (130)
++.|+.++ .+.+.
T Consensus 158 i~~g~~v~l~g~Vt 171 (437)
T PLN02647 158 IRVDVDLKIVGAVT 171 (437)
T ss_pred CcCCcEEEEEEEEE
Confidence 99998774 55544
No 22
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.17 E-value=3.7e-05 Score=46.88 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 61 ~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
..+.+.+...|..+.+|||.+..++|.+...........+....+.+++++|++|++.|+.+ +...+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~ 70 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEV 70 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEE
Confidence 46778888889999999999999999999888765433455667889999999999998766 44444
No 23
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.13 E-value=4.1e-05 Score=55.38 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=49.5
Q ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHH----hhccCCCceeEEEEEEEeecCCCCCeEE
Q 032902 47 RHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACAR----TVVAEDKEIFLGELGISYLSAAPHNWKK 122 (130)
Q Consensus 47 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~----~~~~~~~~~~T~~l~i~fl~p~~~g~~~ 122 (130)
+||++.+.++++++++.|..+. .|..|++-||-+++++=.++ ++.. ...+.....+-.+-+|+|++|+..+ .+
T Consensus 18 Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaG-W~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~d-~~ 94 (144)
T PF09500_consen 18 MGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAG-WGLVWLQLKEAGLNGDIVIADSNIRYLKPVTGD-FT 94 (144)
T ss_dssp TT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHH-HHHHHHHHHHHT---EEEEEEEEEEE-S---S---E
T ss_pred cCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHH-HHHHHHHHHHhCCCCcEEEEeCceEEcCCCCCC-cE
Confidence 5999999999999999999996 99999999999999885443 3321 1122234567789999999999876 66
Q ss_pred EEeee
Q 032902 123 CDCGC 127 (130)
Q Consensus 123 ~~~~~ 127 (130)
++|+.
T Consensus 95 A~~~~ 99 (144)
T PF09500_consen 95 ARCSL 99 (144)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 66654
No 24
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.41 E-value=0.00083 Score=55.03 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=59.5
Q ss_pred EEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEE-EEEeecCCCCCeEEEEee
Q 032902 53 KIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNWKKCDCG 126 (130)
Q Consensus 53 ~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l-~i~fl~p~~~g~~~~~~~ 126 (130)
......+....-..|++.|.+|.++||+++-.++.++...|..... ..+.+.++ .|+|.+|+..|..+..-+
T Consensus 194 ~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~--~~p~~rsVD~i~F~~pVdvG~~L~f~s 266 (357)
T KOG2763|consen 194 WMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCK--GRPATRSVDDIEFQKPVDVGCVLTFSS 266 (357)
T ss_pred EeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcC--CCceEEEechhhccCcceeeeEEEEee
Confidence 4567888899999999999999999999999999999888877643 34455555 699999999999885544
No 25
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=96.73 E-value=0.01 Score=39.54 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=49.1
Q ss_pred EEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc-------cCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 63 LSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 63 l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~-------~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
+++....+++.|.+|-+.+..+++.+......... ..+...++++.+++|++|++.||.+ +..++.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~ 75 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIE 75 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEE
Confidence 45667789999999999999999988655433211 2234456789999999999999875 555543
No 26
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=96.72 E-value=0.012 Score=40.05 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=50.8
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc--------cCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 61 CHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV--------AEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 61 ~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~--------~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
.++++....+++.|.+|-+.+..+++.+......... ..+...+.++++++|++|++.|+.+ ..+++.
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~ 79 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVV 79 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEE
Confidence 4677888889999999999999999877655433221 1234456789999999999999876 444443
No 27
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.28 E-value=0.016 Score=44.22 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEEeee
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCDCGC 127 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~~~~ 127 (130)
.+.+|||++++++=.++-... ........+++++|++|++.|...+.++.
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~-----~~~~~~~~s~~~~fl~p~~~~~~~~~v~~ 58 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA-----PPPGFDPHSLHVYFLRPVPPGPVEYRVEV 58 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH-----TTTSSEEEEEEEEESS--BSCEEEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc-----cCCCCceEEEEeEeccccccCCEEEEEEE
Confidence 678999988876654443332 12224567899999999999966666654
No 28
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=96.17 E-value=0.076 Score=36.56 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=51.9
Q ss_pred EEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc-------cCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 60 ICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 60 ~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~-------~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
..+.++....++..|.+|=+.+..+++.+......... ..+...+.++.+++|++|++.||.+ +.+.+
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v 79 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEI 79 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEE
Confidence 46677888899999999999999999988765443321 2234566789999999999999876 44443
No 29
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=95.58 E-value=0.058 Score=36.52 Aligned_cols=52 Identities=8% Similarity=-0.117 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 72 ~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
+.-++||..++++++.++... ..+......+.++.|++|+..|+.+ +.+.+.
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~ 96 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGTL-----LPGPGTIYLSQSLRFLRPVFIGDTVTATVTVT 96 (128)
T ss_pred CCceecHHHHHHHHHHHHhcc-----CCCceEEEEEEEEEECCCccCCCEEEEEEEEE
Confidence 356899999999987644221 1233445668899999999999865 666553
No 30
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=95.43 E-value=0.094 Score=34.81 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCC-eEEEEee
Q 032902 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN-WKKCDCG 126 (130)
Q Consensus 72 ~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g-~~~~~~~ 126 (130)
..+.+|||.+++++-.++.... +.+. ...+++.+|++|+..+ ...+++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~----~~~~--~~~s~~~~Fl~p~~~~~pv~~~v~ 63 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV----PDDR--VPHSLHSYFLRPGDPDQPIEYEVE 63 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC----CCCC--CeEEEEEEecCCCCCCCCEEEEEE
Confidence 5789999999998877766442 3222 3468999999999874 4545544
No 31
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=94.23 E-value=0.34 Score=34.20 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc-------cCCCceeEEEEEEEeecCCCCCeEEE
Q 032902 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNWKKC 123 (130)
Q Consensus 58 ~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~-------~~~~~~~T~~l~i~fl~p~~~g~~~~ 123 (130)
....+++|.-..++..|.+|=+.+..+.+.+-.-...... ..+...++++++++|++|++.||.+.
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~ 77 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLT 77 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEE
Confidence 4567788888899999999999999999988766554411 11244678999999999999999763
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.91 E-value=0.46 Score=40.40 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhc------cCCCceeEEEEEEEeecCCCCCeEEE
Q 032902 56 RGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVV------AEDKEIFLGELGISYLSAAPHNWKKC 123 (130)
Q Consensus 56 ~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~------~~~~~~~T~~l~i~fl~p~~~g~~~~ 123 (130)
.-..+.+++|.+.+++..|.++=+.+..++|.+..-...... ..+...++++.+++|++|++.||.+.
T Consensus 343 ~~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~ 416 (495)
T PRK07531 343 QPLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALH 416 (495)
T ss_pred CceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEE
Confidence 334577999999999999999999999999977654433211 12345567899999999999998763
No 33
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=93.88 E-value=0.56 Score=31.43 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=38.9
Q ss_pred CCCccCCCCCCcHHHHHHHHHHHHHHHHHh------hccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 66 KPAILNFFGGIHGGAIAAFSERMAIACART------VVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 66 ~~~~~N~~G~vHGG~iatl~D~a~g~a~~~------~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
....++ .|.+|=+.+..++|.+-.-.... ....+...++++.+++|++|++.+|.+ ..+++
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~ 69 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRV 69 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEE
Confidence 345688 99999999999998765444321 112344677899999999999999876 44444
No 34
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.45 E-value=0.33 Score=32.54 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 72 ~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
+.-++||..+++++..+..... +.+........++.|.+|+..||.+ +...+
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v 93 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWL----PGTDGANLGSQSVRFLAPVFPGDTLRVEVEV 93 (127)
T ss_pred CCceechHHHHHHHHhhhhhhc----cCcccceeEEeEEEEeCCcCCCCEEEEEEEE
Confidence 4578999999999877654331 1112334568899999999999866 55444
No 35
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=92.80 E-value=1.1 Score=37.31 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=57.0
Q ss_pred chhhhhcCCeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCC
Q 032902 40 SYSNILGRHIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (130)
Q Consensus 40 ~~~~~i~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g 119 (130)
-|+-.+..++.-.. ++. ....++.|.|.|+.|++-=|++..++-.+.-...... ..+....=++++-||+|+..+
T Consensus 317 t~~d~I~~~l~e~~-~~~--~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~--~~~niiIE~i~iyflk~vqid 391 (432)
T COG4109 317 TISDQIANNLSEKG-DEY--GVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKK--KKRNIIIENITIYFLKPVQID 391 (432)
T ss_pred cHHHHHHhhhhhhc-ccc--ceEEEechhhccccccchHHHHHHHHHHHHHHHHHHh--cCCceEEEeeeeeeecceecc
Confidence 34445555554222 222 2338899999999999999999999988887776653 233445558999999999999
Q ss_pred eEEEE
Q 032902 120 WKKCD 124 (130)
Q Consensus 120 ~~~~~ 124 (130)
+.+.+
T Consensus 392 ~~l~I 396 (432)
T COG4109 392 SVLEI 396 (432)
T ss_pred cEEEE
Confidence 87643
No 36
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=91.65 E-value=3.3 Score=29.01 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=42.5
Q ss_pred EEEEEeC-CeEEEEEEcCCCc--cC----CCCCCcHHHHHHHHHHHHHHHHHhh-ccCCCceeEEEE-EEEeecCCCCCe
Q 032902 50 KVHKIQR-GRLICHLSVKPAI--LN----FFGGIHGGAIAAFSERMAIACARTV-VAEDKEIFLGEL-GISYLSAAPHNW 120 (130)
Q Consensus 50 ~i~~~~~-g~v~~~l~v~~~~--~N----~~G~vHGG~iatl~D~a~g~a~~~~-~~~~~~~~T~~l-~i~fl~p~~~g~ 120 (130)
++.++++ ++++....++++. .. ....+||=.+.-++--++++.+... ...+.....+.+ ++.|++|++.||
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 4556654 6899999888874 22 2456787666444444444322211 111222223333 799999999998
Q ss_pred EE
Q 032902 121 KK 122 (130)
Q Consensus 121 ~~ 122 (130)
.+
T Consensus 107 ~l 108 (147)
T PRK00006 107 QL 108 (147)
T ss_pred EE
Confidence 66
No 37
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=89.71 E-value=2.5 Score=28.71 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=32.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 72 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 72 ~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
+.-++||-.+++++-....-. ++.........+++.|++|+..|+.+ +...+
T Consensus 49 ~~~ivhG~~~~a~~~~~~~~~----~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v 101 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLGDW----LGPNPPARLGRFNVRFRAPVFPGDTLTAEVEV 101 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHHHH----HSTTECEEEEEEEEEESS--BTTEEEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHHHHh----ccCccceEEEEEEEEEeccccCCCEEEEEEEE
Confidence 456899999998875433332 12222344568999999999999876 44433
No 38
>COG5496 Predicted thioesterase [General function prediction only]
Probab=88.72 E-value=6.9 Score=27.86 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=44.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEEE
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKCD 124 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~~ 124 (130)
..++--+++..+++.++.-.+...++.+...+-.+.+++.++|+++|..+.+
T Consensus 28 ~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i 79 (130)
T COG5496 28 LNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTI 79 (130)
T ss_pred cceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEE
Confidence 4567789999999999999999988887776778999999999999986643
No 39
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=87.71 E-value=3.3 Score=28.08 Aligned_cols=48 Identities=8% Similarity=-0.005 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 75 ~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
++||...++++..+..- ..+.+ .....++++|.+|+..||.+ +...+-
T Consensus 45 ia~G~~~~~~~~~~~~~----~~~~~--~~~~~~~~rf~~pv~~Gdtl~~~~~v~ 93 (123)
T cd03455 45 YVNGPTLAGLVIRYVTD----WAGPD--ARVKSFAFRLGAPLYAGDTLRFGGRVT 93 (123)
T ss_pred EEEHHHHHHHHHHHHHH----ccCCc--ceEEEEEEEeeccccCCCEEEEEEEEE
Confidence 58999999998755432 11221 22357899999999999866 555543
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=87.26 E-value=3.7 Score=28.44 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
=++||-..++++-.+.+- ....+.......+++.|++|+..||.+ |...+
T Consensus 43 ~iahG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v 93 (126)
T cd03447 43 TITHGMYTSAAVRALVET----WAADNDRSRVRSFTASFVGMVLPNDELEVRLEH 93 (126)
T ss_pred CeechhHHHHHHHHHHHH----hccCCCcceEEEEEEEEcccCcCCCEEEEEEEE
Confidence 468998888887554322 122222333457899999999999865 54544
No 41
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=86.76 E-value=3.2 Score=28.33 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
=.+||-.+++++.....- . .+.... -.++++.|++|+..||.+ |...+.
T Consensus 45 ~i~~G~~~~~~~~~~~~~---~-~~~~~~--i~~~~~rf~~Pv~~Gdtl~~~~~v~ 94 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD---W-VGDPGR--VVSFGVRFTKPVPVPDTLTCTGIVV 94 (127)
T ss_pred cEecHHHHHHHHHHHHHH---H-cCCccc--eEEEEEEECCcCcCCCEEEEEEEEE
Confidence 478998888887443322 1 221212 257889999999999866 666553
No 42
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=86.50 E-value=7.7 Score=26.05 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=45.6
Q ss_pred EEEEEe-CCeEEEEEEcCCCc--cC-CC---CCCcHHHHHHHHHHHHHHHHHhhcc--CCCceeE-EEEEEEeecCCCCC
Q 032902 50 KVHKIQ-RGRLICHLSVKPAI--LN-FF---GGIHGGAIAAFSERMAIACARTVVA--EDKEIFL-GELGISYLSAAPHN 119 (130)
Q Consensus 50 ~i~~~~-~g~v~~~l~v~~~~--~N-~~---G~vHGG~iatl~D~a~g~a~~~~~~--~~~~~~T-~~l~i~fl~p~~~g 119 (130)
++.+++ ++.++.+..++++. .. .+ ..++|=++.-++.-++++....... .+..... .--++.|.+|+++|
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pg 91 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPG 91 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCC
Confidence 455666 47888888888773 22 22 7888877766666555554332111 2222332 33689999999999
Q ss_pred eEE
Q 032902 120 WKK 122 (130)
Q Consensus 120 ~~~ 122 (130)
+.+
T Consensus 92 d~l 94 (131)
T cd01288 92 DQL 94 (131)
T ss_pred CEE
Confidence 866
No 43
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=82.70 E-value=3.7 Score=28.17 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCcee-EEEEEEEeecCCCCCeEE-EEeeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~-T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
-.+||..+++++..+.. ........... ...-++.|++|++.||.+ |...+-
T Consensus 51 ~ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~ 104 (140)
T cd03446 51 RIAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVV 104 (140)
T ss_pred ceeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEE
Confidence 36888888776643321 11111111111 112289999999999865 665553
No 44
>PLN02868 acyl-CoA thioesterase family protein
Probab=79.17 E-value=7.7 Score=32.09 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.4
Q ss_pred CeEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe
Q 032902 48 HIKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW 120 (130)
Q Consensus 48 gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~ 120 (130)
-++++.++++.-+...+ +.. ...+.++||.+++.+=. |+...++.+.. -..+++.|++|+..+.
T Consensus 135 ~~~l~~~~~~~f~~~~~--~~~-~~~~~~fGG~~~aqal~----Aa~~~~~~~~~--~~s~~~~Fl~~~~~~~ 198 (413)
T PLN02868 135 ILHLEPLEVDIFRGITL--PDA-PTFGKVFGGQLVGQALA----AASKTVDPLKL--VHSLHAYFLLVGDINL 198 (413)
T ss_pred hcCcEeccCCeEECCcC--CCC-cccccccchHHHHHHHH----HHHccCCCCCC--ceEeeeeecCCCCCCC
Confidence 45566777776555543 222 23578999999987432 23323333433 2479999999988753
No 45
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=77.18 E-value=5.3 Score=28.62 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCc--eeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKE--IFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~--~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
-++||-.+++++.....-... ..+.. ......++.|++|+..||.+ |+..+
T Consensus 57 ~Ia~G~~t~sl~~~l~~~~~~---~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V 110 (149)
T cd03450 57 TIAHGFLTLSLLPALTPQLFR---VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTL 110 (149)
T ss_pred eEECHHHHHHHHHHHHHhccc---CCCceEEEEeeccEEEeCcceeCCcEEEEEEEE
Confidence 468999998887665432211 11211 12234589999999999866 55554
No 46
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=77.05 E-value=11 Score=26.03 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK 122 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~ 122 (130)
=++||-.+++++..+..-. ...+....-..++++|.+|+..||.+
T Consensus 45 ~iahG~~t~a~~~~~~~~~----~~~~~~~~~~~~~~rF~~PV~~gDtl 89 (122)
T cd03448 45 PILHGLCTYGFAARAVLEA----FADGDPARFKAIKVRFSSPVFPGETL 89 (122)
T ss_pred ceehhHHHHHHHHHHHHHH----hcCCCcceeEEEEEEEcCCccCCCEE
Confidence 4689988888775543211 11122222346799999999999866
No 47
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=76.04 E-value=11 Score=25.95 Aligned_cols=51 Identities=10% Similarity=-0.049 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCC-CceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 75 GIHGGAIAAFSERMAIACARTVVAED-KEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 75 ~vHGG~iatl~D~a~g~a~~~~~~~~-~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
.+||-.+++++-. +........+ ........++.|.+|+..||.+ +.+.+-
T Consensus 50 ia~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~ 102 (140)
T cd03454 50 AASGWHTAAITMR---LLVDAGLSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVL 102 (140)
T ss_pred eechHHHHHHHHH---hhhhhccccceEEEEcceeeeEeCCCCCCCCEEEEEEEEE
Confidence 6788777776532 2111111111 1111122499999999999866 655553
No 48
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=75.66 E-value=28 Score=26.71 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=42.1
Q ss_pred CeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHH-HHHHHhhccCC---CceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 57 GRLICHLSVKPAILNFFGGIHGGAIAAFSERMA-IACARTVVAED---KEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 57 g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~-g~a~~~~~~~~---~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
+....-++..+.+-+. -..|=-.++.++|... ..+........ ...+++|.+|.|+++.+.++++ .++++
T Consensus 165 ~~~~~W~R~~~~l~~d-~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s 239 (271)
T TIGR00189 165 PPQYVWRRARGSLPDD-PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSS 239 (271)
T ss_pred ceEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEe
Confidence 3355556655544332 3457789999999832 33333221111 2236899999999997777655 55544
No 49
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=73.20 E-value=9 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeE-EEEEEEeecCCCCCeEE-EEeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFL-GELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T-~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
=.+||-.+++++..... . . ..+..... ..-++.|++|++.||.+ |...+
T Consensus 51 ~ia~G~l~~s~~~~l~~---~-~-~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V 101 (142)
T cd03452 51 RVAHGYFVLSAAAGLFV---D-P-APGPVLANYGLENLRFLEPVYPGDTIQVRLTC 101 (142)
T ss_pred eeecHHHHHHHHhhhCc---c-C-CcccEEEEeccceEEECCCCCCCCEEEEEEEE
Confidence 36888888888765331 1 1 11211111 12399999999999865 55544
No 50
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=72.73 E-value=3.6 Score=33.06 Aligned_cols=69 Identities=6% Similarity=-0.066 Sum_probs=44.5
Q ss_pred eEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHh-hc----cCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 58 RLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACART-VV----AEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 58 ~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~-~~----~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
+=.+.++....+-+. -.+|-=+++-+.|...-..+.. ++ ..+..++++|-++-|+||.+.+|++ |..++
T Consensus 177 ~~~vWira~~~~pdd-~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~s 251 (289)
T COG1946 177 QQQVWIRARGELPDD-PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQES 251 (289)
T ss_pred ceeEEEEcCCCCCCC-HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeC
Confidence 334444444443222 3567778888888775544432 22 2456778999999999999988765 66654
No 51
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=70.59 E-value=28 Score=23.08 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCC----CceeEEEEEEEeecCCCCCe-EEEEee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAED----KEIFLGELGISYLSAAPHNW-KKCDCG 126 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~----~~~~T~~l~i~fl~p~~~g~-~~~~~~ 126 (130)
-.+|=.+++.+.|......+....+.. ...+++|-+|.|.+|....+ .+.+.+
T Consensus 15 ~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~ 72 (104)
T cd03444 15 PRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQR 72 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEE
Confidence 367889999999988866655443321 24679999999999999754 445554
No 52
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=70.07 E-value=23 Score=30.07 Aligned_cols=50 Identities=6% Similarity=-0.130 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeeee
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
=++||-.+++++..+.+. ..+ +......+.+++|.+|+..||.+ +...+.
T Consensus 59 ~IahG~l~~s~~~~l~~~----~~~-g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~ 109 (466)
T PRK08190 59 VVAHGMWGGALISAVLGT----RLP-GPGTIYLGQSLRFRRPVRIGDTLTVTVTVR 109 (466)
T ss_pred ceeCHHHHHHHHHHHHhh----hCC-CcceEEEEEEEEEeCCcCCCCEEEEEEEEE
Confidence 368998888876433211 112 22334467899999999999866 555543
No 53
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=69.72 E-value=9.2 Score=29.43 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW 120 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~ 120 (130)
..++||.+++.+=.++.. .++.+.. -.+++++|++|+..+.
T Consensus 21 ~~~fGG~~~Aqal~Aa~~----tv~~~~~--~~S~h~~Fl~~~~~~~ 61 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASK----TVPEEFI--PHSLHSYFVRAGDPKK 61 (271)
T ss_pred CceEccHHHHHHHHHHHh----cCCCCCC--cceeEEEecCCCCCCC
Confidence 589999999876333332 2333332 2479999999998864
No 54
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=68.16 E-value=11 Score=25.95 Aligned_cols=50 Identities=2% Similarity=-0.148 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEE-EEEEeecCCCCCeEE-EEeee
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGE-LGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~-l~i~fl~p~~~g~~~-~~~~~ 127 (130)
.=++||..+.+++-. +.... .. +....... .++.|.+|+..||.+ +...+
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~-~~-~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v 104 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVND-TS-LTAVANLGYDEVRFPAPVFHGDTLYAESEV 104 (146)
T ss_pred CccccHHhHHHHHhh---heehh-cc-ccceeccCccEEEecCCCCCCCEEEEEEEE
Confidence 346899888876532 11111 11 10111122 389999999999866 55444
No 55
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=62.09 E-value=30 Score=25.20 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=17.5
Q ss_pred EEEEEEeecCCCCCeEE-EEeeee
Q 032902 106 GELGISYLSAAPHNWKK-CDCGCS 128 (130)
Q Consensus 106 ~~l~i~fl~p~~~g~~~-~~~~~~ 128 (130)
.+-+..|++|+..||.+ |+..+-
T Consensus 87 ~~q~~~f~rPV~~GDtL~~~~~V~ 110 (166)
T PRK13691 87 VDQRFVFHKPVLAGDKLWARMDIH 110 (166)
T ss_pred eeeEEEEeCCcCCCCEEEEEEEEE
Confidence 35588899999999866 666553
No 56
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=61.63 E-value=49 Score=22.64 Aligned_cols=74 Identities=8% Similarity=0.088 Sum_probs=40.5
Q ss_pred EEEEEe-CCeEEEEEEcCCCc---cCC---CCCCcHHHHH-HHHHHHHHHHHHhhc---cCCCceeEEEE-EEEeecCCC
Q 032902 50 KVHKIQ-RGRLICHLSVKPAI---LNF---FGGIHGGAIA-AFSERMAIACARTVV---AEDKEIFLGEL-GISYLSAAP 117 (130)
Q Consensus 50 ~i~~~~-~g~v~~~l~v~~~~---~N~---~G~vHGG~ia-tl~D~a~g~a~~~~~---~~~~~~~T~~l-~i~fl~p~~ 117 (130)
++.+++ +++++.+..+++++ .++ ...+-|=++. +++-.++.++..... ..+.....+.+ ++.|.+|++
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 456677 57899999999884 221 2334443332 333333333211111 11122233443 999999999
Q ss_pred CCeEEE
Q 032902 118 HNWKKC 123 (130)
Q Consensus 118 ~g~~~~ 123 (130)
+|+.+.
T Consensus 100 pGd~l~ 105 (140)
T TIGR01750 100 PGDQLI 105 (140)
T ss_pred CCCEEE
Confidence 998763
No 57
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=56.22 E-value=59 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=26.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCC
Q 032902 73 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN 119 (130)
Q Consensus 73 ~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g 119 (130)
.=++||-..++++-.+..-. ....+ .. .+++++|.+|+..|
T Consensus 54 ~~iahG~~~~a~~~~~~~~~---~~~~~--~~-~~~~~rF~~pv~~g 94 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTSW---VGDPG--AV-TEYNVRFTAVVPVP 94 (142)
T ss_pred CcEecHHHHHHHHHHHHHHh---cCCCc--ce-EEEEEEecccEECC
Confidence 34689999988876543221 11122 22 36899999999853
No 58
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=54.02 E-value=62 Score=21.38 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=41.8
Q ss_pred EEEEEeC-CeEEEEEEcCCCccCCC------CCCcHHHHHH-HHHHHHHHHHHhhcc---CCC-ceeEEEEEEEeecCCC
Q 032902 50 KVHKIQR-GRLICHLSVKPAILNFF------GGIHGGAIAA-FSERMAIACARTVVA---EDK-EIFLGELGISYLSAAP 117 (130)
Q Consensus 50 ~i~~~~~-g~v~~~l~v~~~~~N~~------G~vHGG~iat-l~D~a~g~a~~~~~~---~~~-~~~T~~l~i~fl~p~~ 117 (130)
++.++++ +.++++..+++++--.. +.+-|=++.- ++-.++.+....... ..+ .....--++.|.+|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 5667777 89999999998853222 4555544442 333333333222110 111 2233345999999999
Q ss_pred CCeEE
Q 032902 118 HNWKK 122 (130)
Q Consensus 118 ~g~~~ 122 (130)
.|+.+
T Consensus 91 pgd~l 95 (131)
T cd00493 91 PGDTL 95 (131)
T ss_pred CCCEE
Confidence 99844
No 59
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=53.03 E-value=20 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=19.3
Q ss_pred ceeEEEEEEEeecCCCCCeEE-EEeeeee
Q 032902 102 EIFLGELGISYLSAAPHNWKK-CDCGCSG 129 (130)
Q Consensus 102 ~~~T~~l~i~fl~p~~~g~~~-~~~~~~~ 129 (130)
..+=.+.++.|.+|++.|+.+ +.+++..
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~ 102 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTD 102 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEE
Confidence 344568999999999999866 6666543
No 60
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=52.19 E-value=1.5e+02 Score=25.42 Aligned_cols=74 Identities=7% Similarity=-0.019 Sum_probs=43.3
Q ss_pred EEEEEeCCeEEEEEEcCCCc--cC----CCCCCcHHHHHHHHHHHHHHHHHhhcc--CCCceeEEEE-EEEeecCCCCCe
Q 032902 50 KVHKIQRGRLICHLSVKPAI--LN----FFGGIHGGAIAAFSERMAIACARTVVA--EDKEIFLGEL-GISYLSAAPHNW 120 (130)
Q Consensus 50 ~i~~~~~g~v~~~l~v~~~~--~N----~~G~vHGG~iatl~D~a~g~a~~~~~~--~~~~~~T~~l-~i~fl~p~~~g~ 120 (130)
++.+++++.++....++.+. .. ....+||=++.=.+=-++++.+....+ .+....-+.+ ++.|.+|+.+||
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 45667788899888888873 22 356788876553222222333221111 1212223444 889999999998
Q ss_pred EEE
Q 032902 121 KKC 123 (130)
Q Consensus 121 ~~~ 123 (130)
.+.
T Consensus 421 tL~ 423 (464)
T PRK13188 421 TLI 423 (464)
T ss_pred EEE
Confidence 663
No 61
>PLN02864 enoyl-CoA hydratase
Probab=48.09 E-value=48 Score=26.59 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEEE
Q 032902 74 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKKC 123 (130)
Q Consensus 74 G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~~ 123 (130)
=++||=+.++++-.+..-. ..+ +......++++.|.+|+..||.+.
T Consensus 228 ~IaHGm~t~g~~~~~~~~~---~~~-~~~~~~~~~~~rF~~PV~pGdtl~ 273 (310)
T PLN02864 228 PILHGLCTLGFAVRAVIKC---FCN-GDPTAVKTISGRFLLHVYPGETLV 273 (310)
T ss_pred ceeccHHHHHHHHHHHHhh---hcC-CCCceEEEEEEEEcCCccCCCEEE
Confidence 4689987777654432111 111 111223578999999999999773
No 62
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=47.63 E-value=42 Score=26.45 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=37.2
Q ss_pred eEEEEEeCCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCe
Q 032902 49 IKVHKIQRGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNW 120 (130)
Q Consensus 49 i~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~ 120 (130)
++++.++++..+..-.. .....+.||.+++.+=.++.- .++.++. .-++++.|++|+..+.
T Consensus 12 l~l~~~~~~~f~g~~~~-----~~~r~~fGGqv~AQal~AA~~----tv~~~~~--~hSlh~~Fl~pg~~~~ 72 (286)
T PRK10526 12 LNLEKIEEGLFRGQSED-----LGLRQVFGGQVVGQALYAAKE----TVPEERL--VHSFHSYFLRPGDSQK 72 (286)
T ss_pred cCcEEccCCeEECcCCC-----CCCCceechHHHHHHHHHHHh----cCCCCCC--ceEEEEEcCCCCCCCC
Confidence 34555566554444221 234679999998875333322 2344432 3479999999998775
No 63
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=47.37 E-value=30 Score=24.95 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.1
Q ss_pred EEEEEEeecCCCCCeEE-EEeee
Q 032902 106 GELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 106 ~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
.+.+++|++|++.||.+ |+..+
T Consensus 87 ~~q~~~f~~PV~~GDtL~~~~eV 109 (159)
T PRK13692 87 VDQVLKFEKPIVAGDKLYCDVYV 109 (159)
T ss_pred eeeEEEEeCCccCCCEEEEEEEE
Confidence 45689999999999866 55544
No 64
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=42.29 E-value=83 Score=24.75 Aligned_cols=64 Identities=6% Similarity=-0.125 Sum_probs=39.8
Q ss_pred EEEEcCCCccCCCCCCcHHHHHHHHHHHH-HHHHHhhccC----CCceeEEEEEEEeecCCCCCeEE-EEe
Q 032902 61 CHLSVKPAILNFFGGIHGGAIAAFSERMA-IACARTVVAE----DKEIFLGELGISYLSAAPHNWKK-CDC 125 (130)
Q Consensus 61 ~~l~v~~~~~N~~G~vHGG~iatl~D~a~-g~a~~~~~~~----~~~~~T~~l~i~fl~p~~~g~~~-~~~ 125 (130)
.-++..+..... -.+|=-+++.+.|.-. ..+++.+... ....+++|-+|.|.+|.+.++++ ++.
T Consensus 180 ~W~R~~~~~~~d-~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~ 249 (286)
T PRK10526 180 VWIRANGSVPDD-LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSV 249 (286)
T ss_pred EEEEeCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEE
Confidence 444444333222 4588889998888443 4444433211 23456899999999999888765 444
No 65
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=41.86 E-value=91 Score=22.26 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCCCeEE-EEeee
Q 032902 75 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 75 ~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
++||-..++++= ++...............--++.|.+|+..||.+ .+..+
T Consensus 69 iahG~~t~a~~~---~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v 119 (159)
T COG2030 69 IAHGMLTLALAM---GLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEV 119 (159)
T ss_pred ehhHHHHHHHHH---HHHHHhccCcceeeeccccceEecCCCCCCCEEEEEEEE
Confidence 678877766542 222222111101112234589999999999866 44444
No 66
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.74 E-value=25 Score=21.29 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHhhC
Q 032902 8 KEVDPEDVSKVIVFLKEVGA 27 (130)
Q Consensus 8 k~~~~~~~~~v~~~~~~~~~ 27 (130)
.+++||..+.|.+|+++...
T Consensus 2 ~rL~pEDQ~~Vd~yL~a~~~ 21 (55)
T PF11293_consen 2 SRLNPEDQQRVDEYLQAGVN 21 (55)
T ss_pred CCCCHHHHHHHHHHHhCCCC
Confidence 36899999999999987764
No 67
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=41.43 E-value=1.1e+02 Score=25.46 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=40.7
Q ss_pred cCCCccCCCCCCcHHH-HHHHHHHHHHHHHHhhccCC-------CceeEEEE-EEEeecCCCCC
Q 032902 65 VKPAILNFFGGIHGGA-IAAFSERMAIACARTVVAED-------KEIFLGEL-GISYLSAAPHN 119 (130)
Q Consensus 65 v~~~~~N~~G~vHGG~-iatl~D~a~g~a~~~~~~~~-------~~~~T~~l-~i~fl~p~~~g 119 (130)
+.|.+.|.-|..++|- |.-++|.+..+|.+.+...+ ..++|..+ .|+|.+|...|
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~ 78 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVG 78 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeecccccc
Confidence 5566677889999995 99999988887765443332 34456655 89999988887
No 68
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.76 E-value=32 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.7
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHhhC
Q 032902 1 MAQQSSAKEVDPEDVSKVIVFLKEVGA 27 (130)
Q Consensus 1 ~~~~~~~k~~~~~~~~~v~~~~~~~~~ 27 (130)
|...|+++.+||+-.+|+.+.|...+.
T Consensus 1 m~r~SkId~LP~eir~~l~~~L~~~~~ 27 (180)
T PF11985_consen 1 MGRRSKIDLLPPEIREWLDQMLRDGGF 27 (180)
T ss_pred CCCCchHhhCCHHHHHHHHHHHHhCCC
Confidence 678899999999988887777766553
No 69
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.09 E-value=23 Score=27.38 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=36.2
Q ss_pred EcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCceeEEEEEEEeecCCCC
Q 032902 64 SVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPH 118 (130)
Q Consensus 64 ~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~~~~~T~~l~i~fl~p~~~ 118 (130)
..+|++.=..|+-|||-..-.+|.++... ....+.++|+.+.-+.|...
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~G------q~~kvl~vdIdi~~~~p~a~ 115 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIG------QPFKVLGVDIDIKPLDPAAR 115 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcC------CCceEEEEecccCcCChhhh
Confidence 34566666789999999999988544333 55678889999888777654
No 70
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=28.52 E-value=1.2e+02 Score=27.07 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCcee-EEEEEEEeecCCCCCeEE-EEeee
Q 032902 75 GIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNWKK-CDCGC 127 (130)
Q Consensus 75 ~vHGG~iatl~D~a~g~a~~~~~~~~~~~~-T~~l~i~fl~p~~~g~~~-~~~~~ 127 (130)
++||-.+++++..... .. . .+.... ...-++.|++|++.||.+ +...+
T Consensus 575 Ia~G~l~~sl~~~l~~---~~-~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V 624 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFV---DP-A-PGPVLANYGLENLRFLEPVGPGDTIQVRLTV 624 (663)
T ss_pred eeCHHHHHHHHHHHhh---cc-C-ccchhhhcccceEEEcCCCCCCCEEEEEEEE
Confidence 7899988888854321 11 1 111111 122489999999999866 55544
No 71
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=28.26 E-value=81 Score=23.67 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=37.0
Q ss_pred CCeEEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHHhhccCC--CceeEEEEEEEe-ecCCCCCeEE-EEeee
Q 032902 56 RGRLICHLSVKPAILNFFGGIHGGAIAAFSERMAIACARTVVAED--KEIFLGELGISY-LSAAPHNWKK-CDCGC 127 (130)
Q Consensus 56 ~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~~~~~~~--~~~~T~~l~i~f-l~p~~~g~~~-~~~~~ 127 (130)
.+....-+...+...+ + +=-.++.++|.......... ... ...+|+|++|.| -.|...++++ ++.++
T Consensus 154 ~~~~~~W~R~~~~~~~--~--~~~~l~~~~D~~~~~~~~~~-~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~ 224 (255)
T PF13622_consen 154 PPELRGWIRLRDPLPD--G--DFAALAFLSDAFPPATLRAF-SGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARS 224 (255)
T ss_dssp SSEEEEEEEESTTT-C--T--HHHHHHHHCTCCHHHHHHCH-TSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEE
T ss_pred CceEEEEEEeCCCccc--c--hHHHHHHHHHhcchhhcccc-CCccccccccceeEEEEEeCCccCCceEEEEEEE
Confidence 4556666776666544 1 21238888898844443322 221 344599999997 4454445544 55543
No 72
>PLN02868 acyl-CoA thioesterase family protein
Probab=27.34 E-value=1.3e+02 Score=24.82 Aligned_cols=67 Identities=7% Similarity=-0.078 Sum_probs=41.2
Q ss_pred EEEEEEcCCCccCCCCCCcHHHHHHHHHHHHHHHHH-hhccCCCc--eeEEEEEEEeecCCCCCeEE-EEee
Q 032902 59 LICHLSVKPAILNFFGGIHGGAIAAFSERMAIACAR-TVVAEDKE--IFLGELGISYLSAAPHNWKK-CDCG 126 (130)
Q Consensus 59 v~~~l~v~~~~~N~~G~vHGG~iatl~D~a~g~a~~-~~~~~~~~--~~T~~l~i~fl~p~~~g~~~-~~~~ 126 (130)
...-++..+.+.+ --.+|=-+++.+.|......++ ........ .+++|-+|.|++|.+.++++ ++..
T Consensus 311 ~~~W~R~~~~~~~-d~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~ 381 (413)
T PLN02868 311 LRYWFRAKGKLSD-DQALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIV 381 (413)
T ss_pred EEEEEEECCCCCC-CHHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEE
Confidence 3344455444332 1357888999999966644433 22222222 46789999999999888765 4443
No 73
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=21.52 E-value=2.7e+02 Score=18.88 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=37.3
Q ss_pred EEEEEe-CC-e----EEEEEEcCCCcc------CCCCCCcHHHHH-HHHHHHHHHHHHhhccCCC------ceeEEEEEE
Q 032902 50 KVHKIQ-RG-R----LICHLSVKPAIL------NFFGGIHGGAIA-AFSERMAIACARTVVAEDK------EIFLGELGI 110 (130)
Q Consensus 50 ~i~~~~-~g-~----v~~~l~v~~~~~------N~~G~vHGG~ia-tl~D~a~g~a~~~~~~~~~------~~~T~~l~i 110 (130)
++.+++ +| . ++.+..+++++- ....++-|-++. +++-.+..++......... .....--++
T Consensus 12 ~v~~v~~~g~~~~g~~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (138)
T PF07977_consen 12 RVLEVDPPGGSHGGRIVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNV 91 (138)
T ss_dssp EEEEEETTTTETTEEEEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEE
Confidence 556666 43 3 788888887742 234566666665 5556666555554321111 112334599
Q ss_pred EeecCCCCCe
Q 032902 111 SYLSAAPHNW 120 (130)
Q Consensus 111 ~fl~p~~~g~ 120 (130)
.|++++.+|+
T Consensus 92 kF~~~v~Pg~ 101 (138)
T PF07977_consen 92 KFRGPVYPGD 101 (138)
T ss_dssp EE-S-B-TTE
T ss_pred EECccEeCCC
Confidence 9999999999
Done!