BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032906
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 41/52 (78%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
++ ++D Y++SG GGQH NK ESA+R+ H+PTG++ DRSQHKNRA+A+
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAM 287
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 5/63 (7%)
Query: 59 TDDELFRECE-----MDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRA 113
DD++ E E +D Y++SG GGQH NK ESAVR+ H+PTG++ DRSQHKN+A
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 114 SAL 116
+A+
Sbjct: 285 TAM 287
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
R+ +D Y+SSG GGQH NK ESA+R+ H+ TGV+ DRSQHKNRA+A+
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAM 287
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
R+ ++D Y++SG GGQH NK ESAVR++H+PTG++ DRSQHKN+ A+
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKNKDQAM 289
>sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain
Marseille) GN=prfA PE=3 SV=1
Length = 360
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
+ +D Y++SG GGQH NK +SAVR+ H+PTG++ +DRSQHKN+ASAL
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASAL 271
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
++ +D Y++SG GGQH NK +SA+R+ H+PTG++ DRSQHKNRA+A+
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAM 287
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SA+R+ H+PTGV+ ++RSQHKNRA A+S
Sbjct: 223 DLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMS 274
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SA+R+ H+PTGV+ ++RSQHKNRA A+S
Sbjct: 223 DLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMS 274
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SA+R+ H+PTGV+ ++RSQHKNRA A+S
Sbjct: 223 DLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMS 274
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SA+R+ H+PTGV+ ++RSQHKNRA A+S
Sbjct: 223 DLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMS 274
>sp|A6W1C2|RF1_MARMS Peptide chain release factor 1 OS=Marinomonas sp. (strain MWYL1)
GN=prfA PE=3 SV=1
Length = 362
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 20 INFPSYKHRGNYQPLFLSCNYSTNDNCSSSSSSRNYLELTDDELFRECEM--DAYKSSGP 77
+ F S HR P S C+ + ++ DD + + ++ D +++SG
Sbjct: 177 LKFESGAHRVQRVPATESQGRIHTSACTVAVMPE--MDEVDDIIINKSDLRIDTFRASGA 234
Query: 78 GGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
GGQH NK +SA+RL H+PTGV+ E+RSQHKNRA A+S
Sbjct: 235 GGQHVNKTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMS 274
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
E +D Y+SSG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA A++
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMA 274
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
+ MD ++SSG GGQH N +SAVRL H+PTGV+A ++RSQHKNRA A+
Sbjct: 224 DIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAM 274
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 39/52 (75%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
++ +D Y++SG GGQH NK ESA+R+ H+PTG++ DRSQHKN+A+A
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAF 287
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
Query: 60 DDELFRECE-----MDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRAS 114
DD++ E E +D Y++SG GGQH NK ESA+R+ H PTG++ DRSQHKN+A+
Sbjct: 226 DDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKAT 285
Query: 115 AL 116
A+
Sbjct: 286 AM 287
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y+SSG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
++ +D Y++SG GGQH NK ESA+R+ H+PTG++ DRSQHKN+ SA
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAF 287
>sp|Q5QUZ8|RF1_IDILO Peptide chain release factor 1 OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=prfA PE=3 SV=1
Length = 364
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 69 MDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+D Y++SG GGQH N+ +SA+RL H+PTGV+ E+RSQHKNRA A+S
Sbjct: 227 VDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMS 275
>sp|A9W1A4|RF1_METEP Peptide chain release factor 1 OS=Methylobacterium extorquens
(strain PA1) GN=prfA PE=3 SV=1
Length = 361
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D ++ G GGQH NK ESA+R+ H+PTGV+ E+RSQHKNRA A+S
Sbjct: 222 DLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQHKNRARAMS 273
>sp|B7L246|RF1_METC4 Peptide chain release factor 1 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=prfA PE=3 SV=1
Length = 361
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D ++ G GGQH NK ESA+R+ H+PTGV+ E+RSQHKNRA A+S
Sbjct: 222 DLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQHKNRARAMS 273
>sp|C1DEV0|RF1_AZOVD Peptide chain release factor 1 OS=Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303) GN=prfA PE=3 SV=1
Length = 360
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
E +D Y+SSG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA A++
Sbjct: 223 ELRVDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMA 274
>sp|A1U367|RF1_MARAV Peptide chain release factor 1 OS=Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8) GN=prfA PE=3 SV=1
Length = 363
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 69 MDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+D ++SSG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA ALS
Sbjct: 226 VDTFRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKALS 274
>sp|A5FX99|RF1_ACICJ Peptide chain release factor 1 OS=Acidiphilium cryptum (strain
JF-5) GN=prfA PE=3 SV=1
Length = 352
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
+ +D +++SG GGQH NK ESAVR+ H+PTG++ E+RSQHKNRA A+
Sbjct: 215 DLRIDVFRASGAGGQHVNKTESAVRITHLPTGIVVAMQEERSQHKNRAKAM 265
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
+ +D Y++SG GGQH NK +SAVR+ H+PTG++A +DRSQH+N+A AL
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKAL 281
>sp|Q6F9S2|RF1_ACIAD Peptide chain release factor 1 OS=Acinetobacter sp. (strain ADP1)
GN=prfA PE=3 SV=2
Length = 362
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y++SG GGQH NK +SAVR+ HVPTGV+ E+RSQHKN+A A++
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMA 272
>sp|Q47Y94|RF1_COLP3 Peptide chain release factor 1 OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=prfA PE=3 SV=1
Length = 362
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ E RSQHKNRA A+S
Sbjct: 223 DLKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQEQRSQHKNRAQAMS 274
>sp|Q9ZMR1|RF2_HELPJ Peptide chain release factor 2 OS=Helicobacter pylori (strain J99)
GN=prfB PE=3 SV=1
Length = 363
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|C5CXW3|RF1_VARPS Peptide chain release factor 1 OS=Variovorax paradoxus (strain
S110) GN=prfA PE=3 SV=1
Length = 362
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
+ +D Y++SG GGQH NK +SAVR+ H+PTG++A +DRSQH+N+A AL
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKAL 271
>sp|B2US00|RF2_HELPS Peptide chain release factor 2 OS=Helicobacter pylori (strain
Shi470) GN=prfB PE=3 SV=1
Length = 363
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|B6JPR7|RF2_HELP2 Peptide chain release factor 2 OS=Helicobacter pylori (strain P12)
GN=prfB PE=3 SV=1
Length = 363
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|Q4K695|RF1_PSEF5 Peptide chain release factor 1 OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=prfA PE=3 SV=1
Length = 360
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SA+R+ H+P+G++ E+RSQHKNRA A+S
Sbjct: 223 DLRIDTYRSSGAGGQHVNKTDSAIRITHIPSGIVVECQEERSQHKNRARAMS 274
>sp|B5Z9U4|RF2_HELPG Peptide chain release factor 2 OS=Helicobacter pylori (strain G27)
GN=prfB PE=3 SV=1
Length = 363
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|Q2GE03|RF1_NEOSM Peptide chain release factor 1 OS=Neorickettsia sennetsu (strain
Miyayama) GN=prfA PE=3 SV=1
Length = 367
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 40/52 (76%)
Query: 65 RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
++ +D Y+SSGPGGQ N +SAVR+ H+PTG++ + +++SQHKNRA A+
Sbjct: 221 KDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNRAKAM 272
>sp|Q1CUY8|RF2_HELPH Peptide chain release factor 2 OS=Helicobacter pylori (strain
HPAG1) GN=prfB PE=3 SV=1
Length = 363
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 57 ELTDDELF----RECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNR 112
EL DD ++ +D Y+SSG GGQH NK ESAVR+ H+PT ++ DR QHKN+
Sbjct: 224 ELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITHIPTNIVVQCQNDRDQHKNK 283
Query: 113 ASAL 116
ASA+
Sbjct: 284 ASAM 287
>sp|Q17YT5|RF2_HELAH Peptide chain release factor 2 OS=Helicobacter acinonychis (strain
Sheeba) GN=prfB PE=3 SV=1
Length = 363
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 70 DAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASAL 116
D Y++SG GGQH NK ESAVR+ H PTG++ DRSQHKN+ASAL
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASAL 287
>sp|Q21FM3|RF1_SACD2 Peptide chain release factor 1 OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D +++SG GGQH NK +SA+RL H+PTGV+ ++RSQHKNRA A+S
Sbjct: 223 DLRIDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMS 274
>sp|B2SFF6|RF1_FRATM Peptide chain release factor 1 OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|A4IWC1|RF1_FRATW Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|Q0BKE8|RF1_FRATO Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|Q2A1Q0|RF1_FRATH Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|A7NE96|RF1_FRATF Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|Q5NIA8|RF1_FRATT Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|Q14JR1|RF1_FRAT1 Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=prfA PE=3 SV=1
Length = 361
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ ++D +++SG GGQH NK +SA+R+ H+PTGV+ + RSQHKNRA+A+S
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMS 274
>sp|A5VYG5|RF1_PSEP1 Peptide chain release factor 1 OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y++SG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA A+S
Sbjct: 223 DLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMS 274
>sp|B0KNE4|RF1_PSEPG Peptide chain release factor 1 OS=Pseudomonas putida (strain GB-1)
GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y++SG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA A+S
Sbjct: 223 DLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMS 274
>sp|Q02G09|RF1_PSEAB Peptide chain release factor 1 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SAVR+ H+P+G++ E+RSQHKNRA A++
Sbjct: 223 DLRVDTYRSSGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMA 274
>sp|B7V0L1|RF1_PSEA8 Peptide chain release factor 1 OS=Pseudomonas aeruginosa (strain
LESB58) GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SAVR+ H+P+G++ E+RSQHKNRA A++
Sbjct: 223 DLRVDTYRSSGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMA 274
>sp|Q88PW5|RF1_PSEPK Peptide chain release factor 1 OS=Pseudomonas putida (strain
KT2440) GN=prfA PE=3 SV=1
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y++SG GGQH NK +SA+R+ H+PTG++ E+RSQHKNRA A+S
Sbjct: 223 DLRVDTYRASGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMS 274
>sp|P42806|RF1_PSEAE Peptide chain release factor 1 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=prfA
PE=3 SV=2
Length = 360
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 66 ECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALS 117
+ +D Y+SSG GGQH NK +SAVR+ H+P+G++ E+RSQHKNRA A++
Sbjct: 223 DLRVDTYRSSGAGGQHVNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMA 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,820,000
Number of Sequences: 539616
Number of extensions: 1830625
Number of successful extensions: 5852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4861
Number of HSP's gapped (non-prelim): 968
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)