Query 032906
Match_columns 130
No_of_seqs 149 out of 1241
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 1.7E-35 5.7E-40 250.7 13.3 121 4-128 145-300 (365)
2 1zbt_A RF-1, peptide chain rel 100.0 1.1E-35 3.9E-40 252.1 11.8 121 4-128 142-296 (371)
3 1rq0_A RF-1, peptide chain rel 100.0 1.2E-35 4.1E-40 249.8 11.8 121 4-128 105-259 (342)
4 3d5a_X RF1, peptide chain rele 100.0 9.6E-36 3.3E-40 251.3 10.2 121 4-128 124-278 (354)
5 2b3t_B RF-1, peptide chain rel 100.0 1.7E-35 5.9E-40 250.2 11.7 121 4-128 128-283 (360)
6 2ihr_1 Peptide chain release f 100.0 4.1E-35 1.4E-39 248.2 13.1 121 4-128 133-288 (365)
7 2rsm_A Probable peptide chain 100.0 7E-31 2.4E-35 192.3 9.1 75 51-129 36-110 (115)
8 2jva_A Peptidyl-tRNA hydrolase 100.0 4.7E-29 1.6E-33 180.6 9.3 70 54-127 6-99 (108)
9 1j26_A Immature colon carcinom 100.0 9.8E-29 3.3E-33 179.9 8.7 70 54-127 13-107 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 2.8E-27 9.7E-32 177.8 5.9 71 53-127 5-99 (140)
11 2ctm_A Vigilin; K homology typ 64.8 4.4 0.00015 27.2 2.6 66 51-129 16-89 (95)
12 2ctj_A Vigilin; K homology typ 63.8 2.5 8.4E-05 28.7 1.2 50 75-129 32-89 (95)
13 2cte_A Vigilin; K homology typ 63.4 3.1 0.0001 27.8 1.6 48 76-128 33-87 (94)
14 2ctk_A Vigilin; K homology typ 59.2 6 0.0002 27.0 2.5 65 51-128 16-87 (104)
15 1vig_A Vigilin; RNA-binding pr 57.1 4.9 0.00017 25.4 1.6 43 75-122 20-69 (71)
16 2ctl_A Vigilin; K homology typ 55.4 8.2 0.00028 25.9 2.7 49 75-128 32-90 (97)
17 1we8_A Tudor and KH domain con 54.3 5.7 0.00019 26.8 1.7 47 75-126 30-87 (104)
18 2axy_A Poly(RC)-binding protei 49.1 6 0.0002 25.0 1.1 45 76-125 21-72 (73)
19 2ctf_A Vigilin; K homology typ 49.0 10 0.00035 25.8 2.3 47 76-128 43-95 (102)
20 2hh3_A KH-type splicing regula 44.2 11 0.00037 25.8 1.9 49 76-127 27-82 (106)
21 2p2r_A Poly(RC)-binding protei 44.2 8.4 0.00029 24.3 1.2 45 76-125 21-74 (76)
22 1ec6_A RNA-binding protein NOV 41.3 17 0.00058 23.4 2.4 50 76-128 19-78 (87)
23 1dtj_A RNA-binding neurooncolo 40.7 13 0.00046 23.1 1.8 45 76-125 19-75 (76)
24 2jvz_A KH type-splicing, FAR u 39.6 25 0.00085 24.5 3.2 48 75-127 106-162 (164)
25 1wvn_A Poly(RC)-binding protei 39.4 7.8 0.00027 24.8 0.5 47 76-127 22-77 (82)
26 2ftc_B Mitochondrial ribosomal 38.2 21 0.00071 26.0 2.6 27 70-97 80-106 (136)
27 2yqr_A KIAA0907 protein; struc 37.5 18 0.00061 25.5 2.2 48 75-126 34-100 (119)
28 3krm_A Insulin-like growth fac 35.3 7.7 0.00026 27.4 -0.1 50 76-128 101-159 (163)
29 1x4m_A FAR upstream element bi 33.7 14 0.00048 24.4 1.0 66 49-127 12-88 (94)
30 1x4n_A FAR upstream element bi 32.6 37 0.0013 22.1 3.0 47 76-127 31-86 (92)
31 2opv_A KHSRP protein; KH domai 30.3 20 0.00069 23.0 1.4 45 76-125 30-85 (85)
32 1k1g_A SF1-BO isoform; splicin 29.6 30 0.001 24.6 2.3 26 96-125 73-99 (131)
33 1j5k_A Heterogeneous nuclear r 29.3 21 0.00072 23.2 1.3 47 75-126 29-84 (89)
34 1zzk_A Heterogeneous nuclear r 27.5 27 0.00094 22.2 1.6 47 75-126 22-77 (82)
35 1uw4_A UPF3X; nonsense mediate 26.1 25 0.00086 23.7 1.3 12 87-98 2-13 (91)
36 2lfh_A DNA-binding protein inh 26.1 21 0.00072 23.3 0.8 23 101-123 18-40 (68)
37 1rl2_A Protein (ribosomal prot 25.7 36 0.0012 24.7 2.1 27 70-97 93-119 (137)
38 3htk_B Structural maintenance 24.2 73 0.0025 20.1 3.2 23 107-129 49-71 (73)
39 3pa8_A Toxin B; CLAN CD cystei 23.8 37 0.0013 27.4 2.1 25 78-102 215-248 (254)
40 4aya_A DNA-binding protein inh 20.1 39 0.0013 23.4 1.3 24 100-123 28-51 (97)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.7e-35 Score=250.67 Aligned_cols=121 Identities=25% Similarity=0.361 Sum_probs=105.5
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCC-------CC-------CCCCc-------C--------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNC-------SS-------SSSSR-------N-------- 54 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~-------~~-------~s~~~-------~-------- 54 (130)
+++||+||.++|+++||++++++..+++.+||+|+++.|+|.+ ++ -+|+. |
T Consensus 145 a~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~P 224 (365)
T 1gqe_A 145 ASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYP 224 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEec
Confidence 5799999999999999999999999999999999999999986 11 11111 1
Q ss_pred ------ceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 55 ------YLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 55 ------~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
.+.|++ .||+++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+.+.
T Consensus 225 e~~~~v~i~i~~----~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 300 (365)
T 1gqe_A 225 EVDDDIDIEINP----ADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEM 300 (365)
T ss_dssp CCBTTBCCCCCG----GGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccCH----HHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122333 4569999999999999999999999999999999999999999999999999999999998754
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=1.1e-35 Score=252.08 Aligned_cols=121 Identities=23% Similarity=0.279 Sum_probs=96.5
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCC-------CC-----------CCCCc------------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNC-------SS-----------SSSSR------------ 53 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~-------~~-----------~s~~~------------ 53 (130)
+++||+||.++|+++||++++++..+++.+||+|+++.|+|.+ ++ .++.+
T Consensus 142 a~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~P 221 (371)
T 1zbt_A 142 AGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMP 221 (371)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEec
Confidence 5799999999999999999999999999989999999999986 11 11111
Q ss_pred ----CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 54 ----NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 54 ----~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
-.+.|++ .|++++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+++.
T Consensus 222 e~~ev~i~I~~----~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~ 296 (371)
T 1zbt_A 222 EVEEVEYEIDP----KDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFA 296 (371)
T ss_dssp CCCGGGSCCCG----GGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCc----CcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1123443 4559999999999999999999999999999999999999999999999999999999998854
No 3
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=1.2e-35 Score=249.79 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=101.5
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCC-------CC-----------CCCCc------------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNC-------SS-----------SSSSR------------ 53 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~-------~~-----------~s~~~------------ 53 (130)
+++||+||.++|+++||++++++..+++.+||+|+++.|+|.+ ++ .++.+
T Consensus 105 a~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P 184 (342)
T 1rq0_A 105 ARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLP 184 (342)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEec
Confidence 6799999999999999999999999999988999999999986 11 11111
Q ss_pred ----CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 54 ----NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 54 ----~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
..+.|++ .|++++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+++.
T Consensus 185 e~~~~~i~i~~----~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 259 (342)
T 1rq0_A 185 EIEEKDIEIRP----EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQK 259 (342)
T ss_dssp CCCGGGSCCCG----GGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCh----hHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1123443 4559999999999999999999999999999999999999999999999999999999998854
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=9.6e-36 Score=251.33 Aligned_cols=121 Identities=26% Similarity=0.317 Sum_probs=105.7
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCC-------CC-----------CCCCc------------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNC-------SS-----------SSSSR------------ 53 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~-------~~-----------~s~~~------------ 53 (130)
+++||+||.++|+++||++++++..+++.+||+|+++.|+|.+ ++ .++.+
T Consensus 124 a~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P 203 (354)
T 3d5a_X 124 ARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLP 203 (354)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEec
Confidence 5799999999999999999999999999989999999999986 11 11111
Q ss_pred ----CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 54 ----NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 54 ----~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
..+.|+++ |++++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+++.
T Consensus 204 ~~~~~~i~i~~~----dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 278 (354)
T 3d5a_X 204 KAEEEDFALNMD----EIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKR 278 (354)
T ss_dssp CCCCCCCCCCGG----GEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccCcc----ceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444 459999999999999999999999999999999999999999999999999999999998864
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=1.7e-35 Score=250.22 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=105.3
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCCC-------C-----------CCCCc------------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNCS-------S-----------SSSSR------------ 53 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~~-------~-----------~s~~~------------ 53 (130)
+++||+||.++|+++||++++++..+++.+||+|+++.|+|.+. + .++.+
T Consensus 128 a~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P 207 (360)
T 2b3t_B 128 AGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMP 207 (360)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCB
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceEEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEec
Confidence 58999999999999999999999999999999999999999861 1 11111
Q ss_pred --C--c-eecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 54 --N--Y-LELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 54 --~--~-~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
. - +.|+++ |++++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+++.
T Consensus 208 e~~~~e~i~i~~~----dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 283 (360)
T 2b3t_B 208 ELPDAELPDVNPA----DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEM 283 (360)
T ss_dssp CCCTTTCCCCCSS----SEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTT
T ss_pred CcccccccccChh----heEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 334444 559999999999999999999999999999999999999999999999999999999998754
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=4.1e-35 Score=248.25 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=105.5
Q ss_pred hHHHHHhhhhhhhccCceeeeeeccCCCCCCceeeeeeccCCC-------CC-------CCCCc----------------
Q 032906 4 LAAQFLLRIPQLGRKNINFPSYKHRGNYQPLFLSCNYSTNDNC-------SS-------SSSSR---------------- 53 (130)
Q Consensus 4 ~~~~f~~~~~~a~r~~~~~~~~~~~~~~~~~~~S~~~~~~g~~-------~~-------~s~~~---------------- 53 (130)
.++||+||.++|+++||++++++..+++.+||+|+++.|+|.+ ++ -+|+.
T Consensus 133 a~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P 212 (365)
T 2ihr_1 133 AEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIP 212 (365)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEec
Confidence 5799999999999999999999999999999999999999987 11 11111
Q ss_pred -----CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 54 -----NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 54 -----~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
..+.|++ .||+++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.+.+.
T Consensus 213 ~~~~~~~i~i~~----~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~ 288 (365)
T 2ihr_1 213 EVDEEVEVVLKP----EELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELER 288 (365)
T ss_dssp ECCSSSSCCCCG----GGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccCc----cceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333 4559999999999999999999999999999999999999999999999999999999998754
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.97 E-value=7e-31 Score=192.30 Aligned_cols=75 Identities=33% Similarity=0.407 Sum_probs=69.5
Q ss_pred CCcCceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEEeCCeeEEEEcCcCCHHHHHHHHHHHHHHHHhhhhhc
Q 032906 51 SSRNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHVPTGVIALAAEDRSQHKNRASALSHSFGPQSEEQCE 129 (130)
Q Consensus 51 ~~~~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h~PtGi~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~~ 129 (130)
.+...+.|+++|| +++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|++..+.
T Consensus 36 d~~~~l~I~~~dl----~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~ 110 (115)
T 2rsm_A 36 DYPALLPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNS 110 (115)
T ss_dssp CCCCSCCCCGGGC----EEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCccCCcCHHHe----EEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445688998888 99999999999999999999999999999999999999999999999999999999998653
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.96 E-value=4.7e-29 Score=180.65 Aligned_cols=70 Identities=36% Similarity=0.520 Sum_probs=65.5
Q ss_pred CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEEE------eC-----------------Ce-eEEEEcCcCCHH
Q 032906 54 NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKH------VP-----------------TG-VIALAAEDRSQH 109 (130)
Q Consensus 54 ~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~h------~P-----------------tG-i~v~~~e~RSq~ 109 (130)
..+.|++++| +++|+|||||||||||||+|+|+|+| +| +| |+|+|+++|||.
T Consensus 6 ~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~ 81 (108)
T 2jva_A 6 NNVHLPDAEI----ELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQE 81 (108)
T ss_dssp SSCEECGGGE----EEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHH
T ss_pred cccccChHHE----EEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHH
Confidence 3567887877 99999999999999999999999999 99 88 999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 032906 110 KNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 110 ~Nr~~A~~rL~~~l~e~q 127 (130)
+||++|+++|.++|.++.
T Consensus 82 ~Nr~~Al~rL~~~l~~a~ 99 (108)
T 2jva_A 82 QNRADALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999874
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.95 E-value=9.8e-29 Score=179.95 Aligned_cols=70 Identities=27% Similarity=0.374 Sum_probs=65.2
Q ss_pred CceecCchhhccceeeeEEecCCCCCcCCCccCceEEEE-EeCCe------------------------eEEEEcCcCCH
Q 032906 54 NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLK-HVPTG------------------------VIALAAEDRSQ 108 (130)
Q Consensus 54 ~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~-h~PtG------------------------i~v~~~e~RSq 108 (130)
-.+.|++++| +++|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|||
T Consensus 13 ~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ 88 (112)
T 1j26_A 13 ASSYIPLDRL----SISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQ 88 (112)
T ss_dssp SCCCCCTTTS----EEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSH
T ss_pred eEEecChHHe----EEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCH
Confidence 3566887887 9999999999999999999999998 99987 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 032906 109 HKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 109 ~~Nr~~A~~rL~~~l~e~q 127 (130)
++||++|+++|+++|.++.
T Consensus 89 ~~Nr~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 89 FRNLAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999874
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.94 E-value=2.8e-27 Score=177.84 Aligned_cols=71 Identities=37% Similarity=0.553 Sum_probs=65.2
Q ss_pred cCceecCchhhccceeeeEEecCCCCCcCCCccCceEEEE------EeCC-----------------e-eEEEEcCcCCH
Q 032906 53 RNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLK------HVPT-----------------G-VIALAAEDRSQ 108 (130)
Q Consensus 53 ~~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNKv~s~V~l~------h~Pt-----------------G-i~v~~~e~RSq 108 (130)
...+.|++++| +++|+|||||||||||||+|+|+|+ |+|+ | |+|+|+++|||
T Consensus 5 ~~~i~I~~~el----~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ 80 (140)
T 4dh9_Y 5 SRHVAIPDGEL----EITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQ 80 (140)
T ss_dssp CSSSCCCTTCS----EEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSH
T ss_pred cCCCccChHHe----EEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCH
Confidence 34577888887 9999999999999999999999999 6997 5 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 032906 109 HKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 109 ~~Nr~~A~~rL~~~l~e~q 127 (130)
++||++|+++|.++|.++.
T Consensus 81 ~~Nr~~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 81 ELNREAALARLVAMIKELT 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999873
No 11
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=64.79 E-value=4.4 Score=27.24 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=42.4
Q ss_pred CCcCceecCchhhccceeeeEEecCCCCCcCCCc--cCceEEEEEeCCe------eEEEEcCcCCHHHHHHHHHHHHHHH
Q 032906 51 SSRNYLELTDDELFRECEMDAYKSSGPGGQHRNK--RESAVRLKHVPTG------VIALAAEDRSQHKNRASALSHSFGP 122 (130)
Q Consensus 51 ~~~~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNK--v~s~V~l~h~PtG------i~v~~~e~RSq~~Nr~~A~~rL~~~ 122 (130)
...-.+.||.+.+ -+==||||.++++ -+|.|+|..-+.| +.|... ..|-+.|.+.+..+
T Consensus 16 ~vt~~i~Ip~~~i--------g~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-----~e~v~~A~~~I~~i 82 (95)
T 2ctm_A 16 MVSEDVPLDHRVH--------ARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-----PENVEEAIDHILNL 82 (95)
T ss_dssp CCCEEEECCTTTH--------HHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-----HHHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHc--------cccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-----HHHHHHHHHHHHHH
Confidence 3445555655443 1123889998884 4667777665555 333322 26789999999999
Q ss_pred Hhhhhhc
Q 032906 123 QSEEQCE 129 (130)
Q Consensus 123 l~e~q~~ 129 (130)
+.+.++.
T Consensus 83 ~~e~~~~ 89 (95)
T 2ctm_A 83 EEEYLAD 89 (95)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 9887763
No 12
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=63.78 E-value=2.5 Score=28.69 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCCCCcCCCcc--Cc-eEEEEEeCCe-----eEEEEcCcCCHHHHHHHHHHHHHHHHhhhhhc
Q 032906 75 SGPGGQHRNKR--ES-AVRLKHVPTG-----VIALAAEDRSQHKNRASALSHSFGPQSEEQCE 129 (130)
Q Consensus 75 sGPGGQ~VNKv--~s-~V~l~h~PtG-----i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~~ 129 (130)
=||||..+++- +| .|.|..-.+| +.|.... .+-+.|.+++.+++.+.+..
T Consensus 32 IG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-----~~v~~A~~~I~~iv~e~e~~ 89 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-----SDVEKAKKQLLHLAEEKQTK 89 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-----HHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-----HHHHHHHHHHHHHHhhhhhc
Confidence 38999999853 45 6776655556 3444332 27788999999998887643
No 13
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=63.38 E-value=3.1 Score=27.76 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCCcCCCcc--CceEEEEEeC----Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 76 GPGGQHRNKR--ESAVRLKHVP----TG-VIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 76 GPGGQ~VNKv--~s~V~l~h~P----tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
||||.++++- +|.|+|..-+ +| +.|... ..+-+.|...+.+++.+.+.
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-----~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-----KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-----HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-----HHHHHHHHHHHHHHhhcccc
Confidence 9999999853 4555555432 46 455443 46778899999998887654
No 14
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=59.18 E-value=6 Score=26.98 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=41.7
Q ss_pred CCcCceecCchhhccceeeeEEecCCCCCcCCCc--cCceEEEEEeCCe-----eEEEEcCcCCHHHHHHHHHHHHHHHH
Q 032906 51 SSRNYLELTDDELFRECEMDAYKSSGPGGQHRNK--RESAVRLKHVPTG-----VIALAAEDRSQHKNRASALSHSFGPQ 123 (130)
Q Consensus 51 ~~~~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNK--v~s~V~l~h~PtG-----i~v~~~e~RSq~~Nr~~A~~rL~~~l 123 (130)
|..-.+.+|.+.+ -+==||||-++++ -+|.|.|..-+.| +.|... . .|-+.|.+.+..++
T Consensus 16 p~~~~i~Ip~~~i--------g~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 16 PVTIEVEVPFDLH--------RYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERV 82 (104)
T ss_dssp CEEEEEECCHHHH--------HHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHc--------cceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHH
Confidence 3444555665544 1122999999984 4677777765554 444443 2 57888999998888
Q ss_pred hhhhh
Q 032906 124 SEEQC 128 (130)
Q Consensus 124 ~e~q~ 128 (130)
.+.+.
T Consensus 83 ~e~e~ 87 (104)
T 2ctk_A 83 KELQA 87 (104)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 77653
No 15
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=57.06 E-value=4.9 Score=25.37 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCCCCcCCCc--cCceEEEEEeCCe----e-EEEEcCcCCHHHHHHHHHHHHHHH
Q 032906 75 SGPGGQHRNK--RESAVRLKHVPTG----V-IALAAEDRSQHKNRASALSHSFGP 122 (130)
Q Consensus 75 sGPGGQ~VNK--v~s~V~l~h~PtG----i-~v~~~e~RSq~~Nr~~A~~rL~~~ 122 (130)
=||||.++|+ -+|.|++..-++| . .|... . .+-+.|.+.+.++
T Consensus 20 IG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~--~---~~v~~A~~~I~~i 69 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD--P---QGVQQAKRELLEL 69 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES--S---HHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC--H---HHHHHHHHHHHHH
Confidence 3899999994 5778888776666 3 44433 1 3567787777665
No 16
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.40 E-value=8.2 Score=25.90 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=34.1
Q ss_pred CCCCCcCCCc--cCceEEEEEeCCe--------eEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 75 SGPGGQHRNK--RESAVRLKHVPTG--------VIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 75 sGPGGQ~VNK--v~s~V~l~h~PtG--------i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
=||||.++|+ -+|.|+|..-+.| +.|... ..|-+.|...+..++.+.+.
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-----~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-----EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-----HHHHHHHHHHHHHHHHHHHh
Confidence 4999999985 3577777765555 344432 34778899999888877653
No 17
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=54.28 E-value=5.7 Score=26.83 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCCCCcCCCc--cCceEEEEEeC--------Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhhh
Q 032906 75 SGPGGQHRNK--RESAVRLKHVP--------TG-VIALAAEDRSQHKNRASALSHSFGPQSEE 126 (130)
Q Consensus 75 sGPGGQ~VNK--v~s~V~l~h~P--------tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~ 126 (130)
=|+||.++++ -.|.|+|.--+ ++ +.|....+ +-+.|.+.+.+++.+.
T Consensus 30 IGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 30 IGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp HTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 3889988883 34555554322 45 55555433 4688889998888765
No 18
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=49.10 E-value=6 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred CCCCcCCCc--cCceEEEEEeCCe-----eEEEEcCcCCHHHHHHHHHHHHHHHHhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPTG-----VIALAAEDRSQHKNRASALSHSFGPQSE 125 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~PtG-----i~v~~~e~RSq~~Nr~~A~~rL~~~l~e 125 (130)
||||.++++ -+|.++|.-.+.| +.|... ..+-..|.+.+.++|.|
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-----~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP-----TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-----HHHHHHHHHHHHHHHhc
Confidence 899999884 4667777665555 333332 35677888888888765
No 19
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=48.96 E-value=10 Score=25.79 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCCCcCCCccC---ceEEEEEeCC--e-eEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 76 GPGGQHRNKRE---SAVRLKHVPT--G-VIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 76 GPGGQ~VNKv~---s~V~l~h~Pt--G-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
|+||+++++.. +.|+|. +|. + |+|+-. ...-+.|...|.+++.+.+.
T Consensus 43 G~~G~~Ik~i~~~~~~v~I~-fp~~~~~ItI~G~-----~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHIE-FTEGEDKITLEGP-----TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEEE-ECSSSCEEEEEEC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEE-eCCCCCEEEEECC-----HHHHHHHHHHHHHHHHHHHh
Confidence 88999999643 367774 663 3 444443 45677788888888877653
No 20
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=44.21 E-value=11 Score=25.83 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCCCcCCCc--cCceEEEEEeCCe-----eEEEEcCcCCHHHHHHHHHHHHHHHHhhhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPTG-----VIALAAEDRSQHKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~PtG-----i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q 127 (130)
|+||.++++ .+|.|+|.-.+++ -+|+..-+ ..+-+.|.+.+.+++.+.+
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~---~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS---HHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHhccc
Confidence 888888884 3455555543322 12222232 4677889999999888764
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=44.21 E-value=8.4 Score=24.26 Aligned_cols=45 Identities=18% Similarity=0.057 Sum_probs=28.5
Q ss_pred CCCCcCCCc--cCceEEEEEeC------Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVP------TG-VIALAAEDRSQHKNRASALSHSFGPQSE 125 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~P------tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e 125 (130)
|+||.+++. -.|.++|.-.+ ++ +.|... ..+-+.|...+.+.+.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-----AASISLAQYLINVRLSS 74 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-----HHHHHHHHHHHHHHHHc
Confidence 888988883 34555555433 34 344432 45667888888888765
No 22
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=41.31 E-value=17 Score=23.45 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCCCcCCCc--cCceEEEEEeCC-----e---eEEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPT-----G---VIALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~Pt-----G---i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
|+||.++++ -.|.++|.-.+. | -.|....+ ..+-+.|...+.+++.+.+.
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcccc
Confidence 888988873 345555543321 1 12333333 45778899999998887643
No 23
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=40.67 E-value=13 Score=23.10 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=27.0
Q ss_pred CCCCcCCCc--cCceEEEEEeCC---------e-eEEEEcCcCCHHHHHHHHHHHHHHHHhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPT---------G-VIALAAEDRSQHKNRASALSHSFGPQSE 125 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~Pt---------G-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e 125 (130)
||||.++++ -.|.++|.-.+. + +.|.- + ..+-+.|...+.+++.+
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G--~---~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG--S---PAATQAAQYLISQRVTY 75 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEE--S---HHHHHHHHHHHHHHCC-
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEe--C---HHHHHHHHHHHHHHHhc
Confidence 889988883 345555543321 3 34433 2 35777888888887765
No 24
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=39.57 E-value=25 Score=24.53 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCCCcCCC--ccCceEEEEEeC------Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhhhh
Q 032906 75 SGPGGQHRN--KRESAVRLKHVP------TG-VIALAAEDRSQHKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 75 sGPGGQ~VN--Kv~s~V~l~h~P------tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q 127 (130)
=|+||.+++ ...|.|+|...+ ++ +.|.. + ..+-+.|...+.+++.+.+
T Consensus 106 IGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G--~---~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 106 IGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMG--P---PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp HCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEES--C---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEc--C---HHHHHHHHHHHHHHHhhhh
Confidence 389999888 345667766543 34 33332 2 3578889999999888765
No 25
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=39.36 E-value=7.8 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCCCcCCCc--cCceEEEEEeC------Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhhhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVP------TG-VIALAAEDRSQHKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~P------tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q 127 (130)
|+||.++++ -.|.++|.-.+ ++ +.|... ..+-+.|...+.+++.+.|
T Consensus 22 GkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 22 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-----AASISLAQYLINARLSSEK 77 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHTC---
T ss_pred CCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-----HHHHHHHHHHHHHHHHhhh
Confidence 889998883 34555555432 23 344432 2677889999998887763
No 26
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=38.17 E-value=21 Score=26.04 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=22.4
Q ss_pred eEEecCCCCCcCCCccCceEEEEEeCCe
Q 032906 70 DAYKSSGPGGQHRNKRESAVRLKHVPTG 97 (130)
Q Consensus 70 ~~~RssGPGGQ~VNKv~s~V~l~h~PtG 97 (130)
+++||+|--.|-+.|....+.|+ +|+|
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 47999999999999977777665 7888
No 27
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.52 E-value=18 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=28.0
Q ss_pred CCCCCcCCCc----cCceEEEEEe--------------CCe-eEEEEcCcCCHHHHHHHHHHHHHHHHhhh
Q 032906 75 SGPGGQHRNK----RESAVRLKHV--------------PTG-VIALAAEDRSQHKNRASALSHSFGPQSEE 126 (130)
Q Consensus 75 sGPGGQ~VNK----v~s~V~l~h~--------------PtG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~ 126 (130)
=||||.++++ |..+|.|+=. .+| +.|.+.+. .+-+.|.+.+.+++.+.
T Consensus 34 IGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 34 EGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGLAAAKKLCENLLQTV 100 (119)
T ss_dssp SCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHHHHHHHHHHHHhhch
Confidence 4778877763 4555555411 234 66666553 34567777777777654
No 28
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=35.29 E-value=7.7 Score=27.43 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=31.7
Q ss_pred CCCCcCCCc--cCceEEEEEeCCee-------EEEEcCcCCHHHHHHHHHHHHHHHHhhhhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPTGV-------IALAAEDRSQHKNRASALSHSFGPQSEEQC 128 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~PtGi-------~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q~ 128 (130)
|+||.++++ ..|.+++...+++. .|+..-+ ..+-+.|...+.+++.+.++
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHHTC
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHHHH
Confidence 899999885 35777776543331 3333333 24567788888888887754
No 29
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=33.67 E-value=14 Score=24.37 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCCCcCceecCchhhccceeeeEEecCCCCCcCCCc--cCceEEEEEeCC--------e-eEEEEcCcCCHHHHHHHHHH
Q 032906 49 SSSSRNYLELTDDELFRECEMDAYKSSGPGGQHRNK--RESAVRLKHVPT--------G-VIALAAEDRSQHKNRASALS 117 (130)
Q Consensus 49 ~s~~~~~~~i~~~~l~~~~~~~~~RssGPGGQ~VNK--v~s~V~l~h~Pt--------G-i~v~~~e~RSq~~Nr~~A~~ 117 (130)
+......+.+|.+.+ -+==|+||.++++ -.|.|+|.-... . +.|..+ .. +-+.|.+
T Consensus 12 p~~~~~~i~Ip~~~v--------G~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~--~~---~v~~A~~ 78 (94)
T 1x4m_A 12 PGNAVQEIMIPASKA--------GLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGD--PY---KVQQAKE 78 (94)
T ss_dssp CCCEEEEEEECHHHH--------HHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEEC--TT---THHHHHH
T ss_pred CCcEEEEEEEChhhc--------ceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeC--HH---HHHHHHH
Confidence 344456666766544 2223889988883 345555543222 1 555552 22 5577888
Q ss_pred HHHHHHhhhh
Q 032906 118 HSFGPQSEEQ 127 (130)
Q Consensus 118 rL~~~l~e~q 127 (130)
.+.+++.+.+
T Consensus 79 ~I~~~i~~~~ 88 (94)
T 1x4m_A 79 MVLELIRDQG 88 (94)
T ss_dssp HHHHHHCCCS
T ss_pred HHHHHHhccC
Confidence 8888887654
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=32.56 E-value=37 Score=22.11 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCCcCCCc--cCceEEEEEeCC------e-eEEEEcCcCCHHHHHHHHHHHHHHHHhhhh
Q 032906 76 GPGGQHRNK--RESAVRLKHVPT------G-VIALAAEDRSQHKNRASALSHSFGPQSEEQ 127 (130)
Q Consensus 76 GPGGQ~VNK--v~s~V~l~h~Pt------G-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~q 127 (130)
|+||.++++ -.|.++|...+. + +.|.-. ..+-+.|...+.+++.+.+
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-----~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 31 GRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-----PESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-----HHHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-----HHHHHHHHHHHHHHHHhcc
Confidence 888888873 345555554332 2 344332 3577889999999888765
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=30.28 E-value=20 Score=23.01 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCCcCCC--ccCceEEEEEeCCe---------eEEEEcCcCCHHHHHHHHHHHHHHHHhh
Q 032906 76 GPGGQHRN--KRESAVRLKHVPTG---------VIALAAEDRSQHKNRASALSHSFGPQSE 125 (130)
Q Consensus 76 GPGGQ~VN--Kv~s~V~l~h~PtG---------i~v~~~e~RSq~~Nr~~A~~rL~~~l~e 125 (130)
||||.+++ .-.|.|+|.-..+| +.|.. +. .+-+.|.+.+.+++.|
T Consensus 30 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G--~~---~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 30 GKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG--DP---YKVQQACEMVMDILRE 85 (85)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE--CH---HHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe--CH---HHHHHHHHHHHHHhcC
Confidence 77887776 33445555433333 44444 12 3556777777777653
No 32
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.55 E-value=30 Score=24.63 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=17.4
Q ss_pred Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhh
Q 032906 96 TG-VIALAAEDRSQHKNRASALSHSFGPQSE 125 (130)
Q Consensus 96 tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e 125 (130)
+| +.|.+.. ..+-+.|++.+..+|.+
T Consensus 73 ~lhV~I~a~~----~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTANT----MENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEESS----HHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEECC----HHHHHHHHHHHHHHHhc
Confidence 45 6677754 24567888888887754
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=29.25 E-value=21 Score=23.16 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=28.6
Q ss_pred CCCCCcCCCc--cCceEEEEEeC------Ce-eEEEEcCcCCHHHHHHHHHHHHHHHHhhh
Q 032906 75 SGPGGQHRNK--RESAVRLKHVP------TG-VIALAAEDRSQHKNRASALSHSFGPQSEE 126 (130)
Q Consensus 75 sGPGGQ~VNK--v~s~V~l~h~P------tG-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~ 126 (130)
=|+||.++++ -+|.++|.--+ ++ +.|.-. ..+-+.|.+.+.+++.+.
T Consensus 29 IGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-----~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 29 IGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-----QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp HCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-----HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-----HHHHHHHHHHHHHHHHhh
Confidence 3788888873 34455544322 24 344432 357788888888888764
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=27.47 E-value=27 Score=22.19 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCCCCcCCCc--cCceEEEEEeCC------e-eEEEEcCcCCHHHHHHHHHHHHHHHHhhh
Q 032906 75 SGPGGQHRNK--RESAVRLKHVPT------G-VIALAAEDRSQHKNRASALSHSFGPQSEE 126 (130)
Q Consensus 75 sGPGGQ~VNK--v~s~V~l~h~Pt------G-i~v~~~e~RSq~~Nr~~A~~rL~~~l~e~ 126 (130)
=|+||.++++ ..|.++|.--+. + +.|.- + ..+-+.|...+.+++.+.
T Consensus 22 IGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G--~---~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 22 IGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITG--T---QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp TCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEE--C---HHHHHHHHHHHHHHHHHH
T ss_pred ECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEe--C---HHHHHHHHHHHHHHHHhc
Confidence 4889988883 345555543221 3 34443 2 356678888888888764
No 35
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=26.09 E-value=25 Score=23.67 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=10.0
Q ss_pred ceEEEEEeCCee
Q 032906 87 SAVRLKHVPTGV 98 (130)
Q Consensus 87 s~V~l~h~PtGi 98 (130)
+||.|+|||.||
T Consensus 2 ~KvVIRrLPP~L 13 (91)
T 1uw4_A 2 SKVVIRRLPPTL 13 (91)
T ss_dssp CEEEEEEECTTC
T ss_pred cEEEEeCCCCCC
Confidence 689999999654
No 36
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.06 E-value=21 Score=23.34 Aligned_cols=23 Identities=17% Similarity=-0.077 Sum_probs=20.1
Q ss_pred EEcCcCCHHHHHHHHHHHHHHHH
Q 032906 101 LAAEDRSQHKNRASALSHSFGPQ 123 (130)
Q Consensus 101 ~~~e~RSq~~Nr~~A~~rL~~~l 123 (130)
-++.+|....+-..||++|+..|
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHC
Confidence 45778999999999999999876
No 37
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=25.66 E-value=36 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEecCCCCCcCCCccCceEEEEEeCCe
Q 032906 70 DAYKSSGPGGQHRNKRESAVRLKHVPTG 97 (130)
Q Consensus 70 ~~~RssGPGGQ~VNKv~s~V~l~h~PtG 97 (130)
+++||+|--.|-+.|....+.|+ +|+|
T Consensus 93 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 119 (137)
T 1rl2_A 93 QLVRAAGTSAQVLGKEGKYVIVR-LASG 119 (137)
T ss_dssp EESSSSSCCEEEEEEETTEEEEE-CTTS
T ss_pred EEEEeCCCeEEEEEEcCCEEEEE-CCCC
Confidence 37899998888888866665554 7888
No 38
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.25 E-value=73 Score=20.12 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhc
Q 032906 107 SQHKNRASALSHSFGPQSEEQCE 129 (130)
Q Consensus 107 Sq~~Nr~~A~~rL~~~l~e~q~~ 129 (130)
-|.+|+..+++.|-..+.+++.+
T Consensus 49 lE~~N~~~s~~~li~~~~~r~~e 71 (73)
T 3htk_B 49 FEAQNMDVSMNDVIGFFNEREAD 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHhHHHHHHHHHHHHHHh
Confidence 37899999999999998887643
No 39
>3pa8_A Toxin B; CLAN CD cysteine protease, protease, toxin-peptide in complex; HET: 621 IHP; 2.00A {Clostridium difficile} PDB: 3pee_B*
Probab=23.83 E-value=37 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCcCCCcc-------CceEEEEEeC-Ce-eEEEE
Q 032906 78 GGQHRNKR-------ESAVRLKHVP-TG-VIALA 102 (130)
Q Consensus 78 GGQ~VNKv-------~s~V~l~h~P-tG-i~v~~ 102 (130)
.||||||. ++|+.|.|-| .+ |++++
T Consensus 215 ~g~WvnK~~a~i~~~~nK~vl~wn~~en~l~~~~ 248 (254)
T 3pa8_A 215 SGEWINKEESIIKDISSKEYISFNPKENKITVKS 248 (254)
T ss_dssp TSCEECHHHHHHTTCCCCEEEEEETTTTEEEEEE
T ss_pred CCchhhhhhhhhhccCccEEEEecCCCCEEEEee
Confidence 47999998 7999999998 44 66654
No 40
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=20.14 E-value=39 Score=23.39 Aligned_cols=24 Identities=13% Similarity=-0.128 Sum_probs=19.3
Q ss_pred EEEcCcCCHHHHHHHHHHHHHHHH
Q 032906 100 ALAAEDRSQHKNRASALSHSFGPQ 123 (130)
Q Consensus 100 v~~~e~RSq~~Nr~~A~~rL~~~l 123 (130)
..++++|+...+-..||++|+..|
T Consensus 28 ~~~~~~r~Rm~~lN~AF~~LR~~v 51 (97)
T 4aya_A 28 TPVDDPMSLLYNMNDCYSKLKELV 51 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHC
Confidence 337788999999999999999876
Done!