BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032907
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 29 FEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSE 88
F+KLD +G L + L E ++ + ++E ++ ++ +NI + D D+NG I+ SE
Sbjct: 361 FKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSE 420
Query: 89 FRSL 92
F S+
Sbjct: 421 FISV 424
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 29 FEKLDFVKNGGLSRSTLRE---RFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNID 85
FEK D K+G LS RE F +F ED + EEID D NG ++
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDV-----------DGNGELN 55
Query: 86 RSEFRSLMEEIM 97
EF S +E+++
Sbjct: 56 ADEFTSCIEKML 67
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDME-------DEAQPIEEIDRLYNNIFERFDED 79
+ F +LD +G L R L E + + + D +Q E+D +I + D D
Sbjct: 318 QIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD----HILQSVDFD 373
Query: 80 RNGNIDRSEFRSLMEEIMLAMAR 102
RNG I+ SEF ++ + L ++R
Sbjct: 374 RNGYIEYSEFVTVCMDKQLLLSR 396
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDME-------DEAQPIEEIDRLYNNIFERFDED 79
+ F +LD +G L R L E + + + D +Q E+D +I + D D
Sbjct: 44 QIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD----HILQSVDFD 99
Query: 80 RNGNIDRSEFRSLMEEIMLAMAR 102
RNG I+ SEF ++ + L ++R
Sbjct: 100 RNGYIEYSEFVTVCMDKQLLLSR 122
>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 64 EIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
E +R F FD+D NG+IDRS+F S + MLA
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDF-SGAAKAMLA 35
>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 64 EIDRLYNNIFERFDEDRNGNIDRSEF----RSLMEEIMLAM 100
E +R F FD+D NG+IDRS+F ++L+ E +A
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKALLAEFGVAA 41
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 28 CFEKLDFVKNGGLSRSTLRERFHRFF-DMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDR 86
F DF +G L+R L + + ED E+ +L +NI E D DR+G I+
Sbjct: 134 AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINL 193
Query: 87 SEFRSLM 93
SEF+ ++
Sbjct: 194 SEFQHVI 200
>pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
System Methyltransferase Subunit From Streptococcus
Thermophilus, Northeast Structural Genomics Consortium
Target Sur80
Length = 542
Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 13 KFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHR-FFDMEDEAQ---PIEEIDRL 68
K+ +D+ E+ + ++ + + L+ + L ER + F +ED AQ IE+ D L
Sbjct: 72 KYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDIEQSDEL 131
Query: 69 YNNIFERFD 77
Y N+FE D
Sbjct: 132 YENLFEDID 140
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 29 FEKLDFVKNGGLSRSTLRERFHRFF-DMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRS 87
F DF +G L+R L + + ED E+ +L +NI E D DR+G I+ S
Sbjct: 104 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Query: 88 EFRSLM 93
EF+ ++
Sbjct: 164 EFQHVI 169
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo
Form
Length = 190
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 37 NGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEF 89
+G L++S ++ + +FF D + E +F FD D+NG ID EF
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAE-------YVFNVFDADKNGYIDFKEF 85
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)
Query: 29 FEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSE 88
F +D +G L R L + + + E + +I+ + I D DRNG ID SE
Sbjct: 352 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 411
Query: 89 FRSLMEEIMLAMARGIGDSLVLVALDQDSLLNK 121
F V VA+D+ SLL+K
Sbjct: 412 F-------------------VTVAMDRKSLLSK 425
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 6 LNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEI 65
L+G V F D + E+ VD DF +NG + + F + + + +
Sbjct: 375 LSGEEVAVF--DLPQIESEVDAILGAADFDRNGYID-------YSEFVTVAMDRKSLLSK 425
Query: 66 DRLYNNIFERFDEDRNGNIDRSEFRSL 92
D+L + F++FD+D NG I E S+
Sbjct: 426 DKL-ESAFQKFDQDGNGKISVDELASV 451
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 17 DKAKFENCVDECFEKLDFVKNG----------GLSRSTL--RERFHRFFDMEDEAQP--- 61
D + E+ VD+ + +DF KNG + R TL RER R F M D
Sbjct: 399 DASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKI 458
Query: 62 ----------IEEID-RLYNNIFERFDEDRNGNIDRSEFRSLM 93
+ ++D + ++ D++ +G +D EF+ ++
Sbjct: 459 SSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 501
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 17 DKAKFENCVDECFEKLDFVKNG----------GLSRSTL--RERFHRFFDMEDEAQP--- 61
D + E+ VD+ + +DF KNG + R TL RER R F M D
Sbjct: 400 DASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKI 459
Query: 62 ----------IEEID-RLYNNIFERFDEDRNGNIDRSEFRSLM 93
+ ++D + ++ D++ +G +D EF+ ++
Sbjct: 460 SSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 502
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 17 DKAKFENCVDECFEKLDFVKNG----------GLSRSTL--RERFHRFFDMEDEAQP--- 61
D + E+ VD+ + +DF KNG + R TL RER R F M D
Sbjct: 376 DASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKI 435
Query: 62 ----------IEEID-RLYNNIFERFDEDRNGNIDRSEFRSLM 93
+ ++D + ++ D++ +G +D EF+ ++
Sbjct: 436 SSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 19/95 (20%)
Query: 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDR 86
+ F +D +G L R L + + + E + +I+ + I D DRNG ID
Sbjct: 67 DIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDY 126
Query: 87 SEFRSLMEEIMLAMARGIGDSLVLVALDQDSLLNK 121
SEF V VA+D+ SLL+K
Sbjct: 127 SEF-------------------VTVAMDRKSLLSK 142
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 6 LNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEI 65
L+G V F D + E+ VD DF +NG + + F + + + +
Sbjct: 92 LSGEEVAVF--DLPQIESEVDAILGAADFDRNGYID-------YSEFVTVAMDRKSLLSK 142
Query: 66 DRLYNNIFERFDEDRNGNIDRSEFRSL 92
D+L + F++FD+D NG I E S+
Sbjct: 143 DKL-ESAFQKFDQDGNGKISVDELASV 168
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 63 EEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMA 101
EE+ RL ++F D +R+G ++R EFR+L E+ + A
Sbjct: 24 EELARL-RSVFAACDANRSGRLEREEFRALCTELRVRPA 61
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 17 DKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERF 76
D + E+ VD+ + +DF KNG + S F + + + + +RL F F
Sbjct: 376 DASAVEHEVDQVLDAVDFDKNGYIEYS-------EFVTVAXDRKTLLSRERL-ERAFRXF 427
Query: 77 DEDRNGNIDRSEFRSL 92
D D +G I +E ++
Sbjct: 428 DSDNSGKISSTELATI 443
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI ++RFD DR+G I +E E
Sbjct: 67 EEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFE 104
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 73 FERFDEDRNGNIDRSEFRSLMEEI 96
F+ +D+DRNG IDR E ++E I
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESI 124
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI ++RFD DR+G I +E E
Sbjct: 78 EEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFE 115
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI ++RFD DR+G I +E E
Sbjct: 78 EEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFE 115
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI ++RFD DR+G I +E E
Sbjct: 74 EEFKYLWNNIKKWQGIYKRFDTDRSGTIGSNELPGAFE 111
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI +++FD DR+G I SE E
Sbjct: 67 EEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFE 104
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 25 VDECFEKLDFVKNGGLSRSTLRERFHRFFDM---------EDEAQPIE-EIDRLYNNIFE 74
+ E F KLD +G L R L +H F + ++E IE +ID L
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSL----MP 388
Query: 75 RFDEDRNGNIDRSEF 89
D D +G+I+ SEF
Sbjct: 389 LLDMDGSGSIEYSEF 403
>pdb|2VEQ|A Chain A, Insights Into Kinetochore-Dna Interactions From The
Structure Of Cep3p
Length = 565
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 45 LRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMARGI 104
L ER + + D+ Q ++ D Y+ +F+ D + L + M ++ +G+
Sbjct: 467 LTERLSKLKLLWDKVQLLDSGDSFYHPVFKILQND-------IKIIELKNDEMFSLIKGL 519
Query: 105 GDSLVLVALDQDSLLNK 121
G + L L Q+SLL +
Sbjct: 520 GSLVPLNKLRQESLLEE 536
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI +++FD DR+G I SE E
Sbjct: 78 EEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFE 115
>pdb|3A28|C Chain C, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|D Chain D, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|A Chain A, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|B Chain B, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|E Chain E, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|F Chain F, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|G Chain G, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
pdb|3A28|H Chain H, Crystal Structure Of L-2,3-Butanediol Dehydrogenase
Length = 258
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 15 VDDKAKFENCVDECFEKLD----FVKNGGLSR 42
V DKA F++ +DE EKL V N G+++
Sbjct: 62 VTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQ 93
>pdb|2QUQ|A Chain A, Crystal Structure Of The Essential Inner Kinetochore
Protein Cep3p
Length = 562
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 45 LRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMARGI 104
L ER + + D+ Q ++ D Y+ +F+ D + L + M ++ +G+
Sbjct: 464 LTERLSKLKLLWDKVQLLDSGDSFYHPVFKILQND-------IKIIELKNDEMFSLIKGL 516
Query: 105 GDSLVLVALDQDSLLNK 121
G + L L Q+SLL +
Sbjct: 517 GSLVPLNKLRQESLLEE 533
>pdb|1IJ5|A Chain A, Metal-Free Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
pdb|1IJ6|A Chain A, Ca2+-Bound Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
Length = 323
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 29 FEKLDFVKNGGLSRSTLRERFHRF-FDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRS 87
F K+D NG LSR RE F R FD + + + +F DED + ++ S
Sbjct: 194 FRKIDTNSNGTLSRKEFREHFVRLGFDKKS----------VQDALFRYADEDESDDVGFS 243
Query: 88 EFRSL 92
E+ L
Sbjct: 244 EYVHL 248
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 63 EEIDRLYNNI------FERFDEDRNGNIDRSEFRSLME 94
EE L+NNI ++RF+ DR+G I +E E
Sbjct: 794 EEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFE 831
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 36 KNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93
+G L+R + + +FF P + N++F FD+D NG I EF +++
Sbjct: 39 PSGQLAREDFVKIYKQFF-------PFGSPEDFANHLFTVFDKDNNGFIHFEEFITVL 89
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLAM 100
Y I+ D DR+G ++ E R +EE M
Sbjct: 606 YQKIYREIDVDRSGTMNSYEMRKALEEAGFKM 637
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State
pdb|3IBV|B Chain B, Karyopherin Cytosolic State
pdb|3ICQ|T Chain T, Karyopherin Nuclear State
pdb|3ICQ|U Chain U, Karyopherin Nuclear State
Length = 980
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 86 RSEFRSLMEEIMLAMARGIGDSLVL---VALDQDSLLNKAVQ 124
+SEF + +++L++ I DSLVL V + +D+L+ A++
Sbjct: 142 QSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIR 183
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95
Y I+ D DR+G ++ E R +EE
Sbjct: 607 YQKIYREIDVDRSGTMNSYEMRKALEE 633
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95
Y I+ D DR+G ++ E R +EE
Sbjct: 607 YQKIYREIDVDRSGTMNSYEMRKALEE 633
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95
Y I+ D DR+G ++ E R +EE
Sbjct: 607 YQKIYREIDVDRSGTMNSYEMRKALEE 633
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
+ F FD+D NG+I SE ++M + L+
Sbjct: 13 FKEAFALFDKDNNGSISSSELATVMRSLGLS 43
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 IDRLYNNIFERFDEDRNGNIDRSEFRSLM 93
I+ + + FE D +G ID+ E+RSL+
Sbjct: 164 IEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 73 FERFDEDRNGNIDRSEFRSLM 93
F+ FD+D+NG I SE R +M
Sbjct: 10 FKVFDKDQNGYISASELRHVM 30
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
+ F FD+D NG+I SE ++M + L+
Sbjct: 12 FKEAFALFDKDNNGSISSSELATVMRSLGLS 42
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 73 FERFDEDRNGNIDRSEFRSLM 93
F+ FD+D+NG I SE R +M
Sbjct: 89 FKVFDKDQNGYISASELRHVM 109
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
+ F FD+D NG+I SE ++M + L+
Sbjct: 12 FKEAFALFDKDNNGSISSSELATVMRSLGLS 42
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 65 IDRLYNNIFERFDEDRNGNIDRSEFRSLM 93
I+ + + FE D +G ID+ E+RSL+
Sbjct: 133 IEDIIDKTFEEADTKHDGKIDKEEWRSLV 161
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal
Domain Of Yeast Calmodulin
Length = 77
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
+ F FD+D NG+I SE ++M + L+
Sbjct: 12 FKEAFALFDKDNNGSISSSELATVMRSLGLS 42
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 73 FERFDEDRNGNIDRSEFRSLM 93
F+ FD+D+NG I SE R +M
Sbjct: 15 FKVFDKDQNGYISASELRHVM 35
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 37 NGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEF 89
+G L + ++ + +FF P + + +F FDE+++G I+ SEF
Sbjct: 40 SGQLDAAGFQKIYKQFF-------PFGDPTKFATFVFNVFDENKDGRIEFSEF 85
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 5 VLNGSTVTKFVDDKAK----FENCVDECFEKLDFVKNGG 39
V+ GS V + + + K CV++CFEK V GG
Sbjct: 494 VVRGSNVLSYANAEVKPTPLLSLCVEDCFEKGVDVSRGG 532
>pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii
Phosphosulfolactate Synthase
Length = 251
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 1 MSIAVLNGSTVTKFVDDKAKFENCVDECFEKLDF 34
I V G T+ ++ K KF+ ++EC EKL F
Sbjct: 67 WGIKVYPGGTLFEYAYSKGKFDEFLNEC-EKLGF 99
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDR 86
E F D NG +S +RE DE E++D + + I D D +G +D
Sbjct: 7 EAFRLYDKEGNGYISTDVMREILAEL----DETLSSEDLDAMIDEI----DADGSGTVDF 58
Query: 87 SEFRSLM 93
EF +M
Sbjct: 59 EEFMGVM 65
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 28 CFEKLDFVKNGGLSR 42
CF LDF KNG +SR
Sbjct: 143 CFNTLDFNKNGQISR 157
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium
Bound Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 DRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96
++L IF+ D D NG ID++EF I
Sbjct: 35 EQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 DRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96
++L IF+ D D NG ID++EF I
Sbjct: 35 EQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 28 CFEKLDFVKNGGLSR 42
CF LDF KNG +SR
Sbjct: 143 CFNTLDFNKNGQISR 157
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99
+ N+F +D D +G ID++E + + L+
Sbjct: 73 WQNVFRTYDRDNSGMIDKNELKQALSGYRLS 103
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDR 86
E FE D + G +++ L+ +F + A +N +F D NG I
Sbjct: 10 EAFELFDSERTGFITKEGLQTVLKQFGVRVEPAA--------FNEMFNEADATGNGKIQF 61
Query: 87 SEFRSLM---------EEIMLAMARGI---GDSLVLVALDQDSLLN 120
EF S+M E+I+ R G + A QD+LLN
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLN 107
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 66 DRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96
++L IF+ D D NG ID++EF I
Sbjct: 35 EQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,475,848
Number of Sequences: 62578
Number of extensions: 131532
Number of successful extensions: 633
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 136
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)