Query 032907
Match_columns 130
No_of_seqs 217 out of 1029
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.6 7.4E-15 1.6E-19 88.7 7.7 66 24-93 1-66 (66)
2 cd05022 S-100A13 S-100A13: S-1 99.3 1.1E-11 2.3E-16 79.8 8.4 72 23-101 8-81 (89)
3 COG5126 FRQ1 Ca2+-binding prot 99.3 2.2E-11 4.8E-16 85.8 7.6 66 21-94 90-155 (160)
4 cd05027 S-100B S-100B: S-100B 99.3 8.7E-11 1.9E-15 75.4 9.5 69 23-99 8-83 (88)
5 cd05026 S-100Z S-100Z: S-100Z 99.2 4.7E-11 1E-15 77.2 7.3 71 23-98 10-84 (93)
6 cd05025 S-100A1 S-100A1: S-100 99.2 1.5E-10 3.3E-15 74.5 8.2 71 23-98 9-83 (92)
7 cd00052 EH Eps15 homology doma 99.2 1.6E-10 3.4E-15 69.3 7.7 63 26-98 2-64 (67)
8 KOG0027 Calmodulin and related 99.2 1.2E-10 2.6E-15 81.2 7.8 65 23-95 85-149 (151)
9 smart00027 EH Eps15 homology d 99.2 4.4E-10 9.6E-15 72.8 9.3 68 21-98 8-75 (96)
10 cd00213 S-100 S-100: S-100 dom 99.1 4.1E-10 8.9E-15 71.7 8.4 75 20-98 5-82 (88)
11 cd05031 S-100A10_like S-100A10 99.1 4.9E-10 1.1E-14 72.4 8.7 70 22-96 7-80 (94)
12 KOG0027 Calmodulin and related 99.1 4.8E-10 1E-14 78.2 8.8 69 21-97 6-74 (151)
13 cd00252 SPARC_EC SPARC_EC; ext 99.1 3.7E-10 8E-15 76.0 7.7 62 20-93 45-106 (116)
14 KOG0034 Ca2+/calmodulin-depend 99.1 4.5E-10 9.8E-15 81.2 8.6 72 23-95 104-175 (187)
15 cd05029 S-100A6 S-100A6: S-100 99.1 1.8E-09 4E-14 69.2 9.3 69 23-99 10-83 (88)
16 KOG0044 Ca2+ sensor (EF-Hand s 99.1 5.7E-10 1.2E-14 81.0 7.0 75 21-95 98-175 (193)
17 cd05023 S-100A11 S-100A11: S-1 99.0 4E-09 8.8E-14 67.7 8.2 73 22-98 8-83 (89)
18 cd00051 EFh EF-hand, calcium b 99.0 4.5E-09 9.7E-14 60.7 7.1 61 25-93 2-62 (63)
19 PF13833 EF-hand_8: EF-hand do 99.0 4.3E-09 9.3E-14 61.0 6.7 52 36-95 1-53 (54)
20 COG5126 FRQ1 Ca2+-binding prot 98.9 1.2E-08 2.6E-13 72.0 8.3 75 18-96 15-121 (160)
21 PTZ00183 centrin; Provisional 98.8 2.2E-08 4.8E-13 69.1 8.2 65 23-95 90-154 (158)
22 PTZ00184 calmodulin; Provision 98.8 2.5E-08 5.5E-13 67.9 8.1 64 23-94 84-147 (149)
23 KOG0044 Ca2+ sensor (EF-Hand s 98.8 1.6E-08 3.5E-13 73.4 6.9 73 22-102 63-135 (193)
24 PTZ00183 centrin; Provisional 98.8 6.6E-08 1.4E-12 66.7 9.2 66 22-95 16-81 (158)
25 PTZ00184 calmodulin; Provision 98.8 7E-08 1.5E-12 65.7 8.9 66 23-96 11-76 (149)
26 cd05030 calgranulins Calgranul 98.8 1.1E-07 2.5E-12 60.7 8.9 72 23-98 8-82 (88)
27 KOG0031 Myosin regulatory ligh 98.8 6.6E-08 1.4E-12 67.5 8.2 75 19-97 28-131 (171)
28 PF14658 EF-hand_9: EF-hand do 98.7 7.1E-08 1.5E-12 58.4 6.3 63 27-96 2-65 (66)
29 KOG0028 Ca2+-binding protein ( 98.7 1.3E-07 2.9E-12 66.4 8.0 70 19-97 29-99 (172)
30 KOG0028 Ca2+-binding protein ( 98.7 1.2E-07 2.6E-12 66.6 7.5 66 22-95 105-170 (172)
31 PF00036 EF-hand_1: EF hand; 98.7 2.7E-08 5.9E-13 50.9 3.2 27 69-95 2-28 (29)
32 PF00036 EF-hand_1: EF hand; 98.7 3.6E-08 7.7E-13 50.5 3.4 28 25-52 2-29 (29)
33 KOG0041 Predicted Ca2+-binding 98.6 1.8E-07 3.9E-12 68.1 8.1 68 21-96 97-164 (244)
34 PLN02964 phosphatidylserine de 98.6 3.3E-07 7.1E-12 77.0 8.8 66 23-96 179-244 (644)
35 KOG0036 Predicted mitochondria 98.5 3.6E-07 7.7E-12 72.6 7.8 81 15-102 6-86 (463)
36 KOG0038 Ca2+-binding kinase in 98.5 3.2E-07 6.9E-12 63.8 6.6 78 14-94 99-176 (189)
37 KOG0037 Ca2+-binding protein, 98.5 1.1E-06 2.3E-11 64.6 8.5 66 23-96 124-189 (221)
38 PF13405 EF-hand_6: EF-hand do 98.5 1.9E-07 4.2E-12 48.2 3.3 30 24-53 1-31 (31)
39 PRK12309 transaldolase/EF-hand 98.5 7.7E-07 1.7E-11 71.0 7.8 62 15-97 326-387 (391)
40 KOG0036 Predicted mitochondria 98.4 8.9E-07 1.9E-11 70.4 6.7 77 10-94 69-145 (463)
41 KOG0030 Myosin essential light 98.3 3.5E-06 7.7E-11 58.0 7.9 77 21-101 9-122 (152)
42 cd05024 S-100A10 S-100A10: A s 98.3 4E-06 8.7E-11 54.0 7.5 70 23-98 8-79 (91)
43 PF13202 EF-hand_5: EF hand; P 98.3 7.7E-07 1.7E-11 43.9 2.9 25 25-49 1-25 (25)
44 KOG0377 Protein serine/threoni 98.3 2E-06 4.3E-11 69.1 6.6 69 23-96 547-616 (631)
45 PLN02964 phosphatidylserine de 98.3 4E-06 8.8E-11 70.5 8.8 67 22-96 142-208 (644)
46 PF13202 EF-hand_5: EF hand; P 98.3 1.4E-06 2.9E-11 43.0 3.2 24 70-93 2-25 (25)
47 PF10591 SPARC_Ca_bdg: Secrete 98.2 1E-06 2.2E-11 59.0 3.2 63 19-91 50-112 (113)
48 PF12763 EF-hand_4: Cytoskelet 98.2 1.3E-05 2.7E-10 52.9 8.2 68 22-100 9-76 (104)
49 KOG0037 Ca2+-binding protein, 98.2 1E-05 2.3E-10 59.4 7.5 73 23-95 57-152 (221)
50 KOG4223 Reticulocalbin, calume 98.1 1E-05 2.2E-10 62.5 7.4 80 23-114 163-242 (325)
51 KOG0031 Myosin regulatory ligh 98.1 2.4E-05 5.1E-10 54.9 7.8 65 22-94 100-164 (171)
52 PF14788 EF-hand_10: EF hand; 98.1 1.8E-05 4E-10 45.5 6.0 50 39-96 1-50 (51)
53 PF13405 EF-hand_6: EF-hand do 98.0 6.5E-06 1.4E-10 42.4 3.3 27 69-95 2-28 (31)
54 KOG0034 Ca2+/calmodulin-depend 98.0 3.9E-05 8.4E-10 55.6 8.3 32 67-98 104-135 (187)
55 KOG4065 Uncharacterized conser 98.0 3E-05 6.6E-10 52.0 6.2 67 26-92 70-142 (144)
56 KOG0040 Ca2+-binding actin-bun 97.9 3.1E-05 6.7E-10 69.6 6.1 70 23-94 2253-2323(2399)
57 KOG0377 Protein serine/threoni 97.7 8.8E-05 1.9E-09 59.9 6.2 94 5-98 446-578 (631)
58 KOG4251 Calcium binding protei 97.7 5.7E-05 1.2E-09 56.9 4.4 69 21-94 99-167 (362)
59 KOG0046 Ca2+-binding actin-bun 97.6 0.00036 7.8E-09 57.3 8.1 71 23-99 19-89 (627)
60 KOG0030 Myosin essential light 97.5 0.00048 1E-08 47.6 6.8 61 24-93 89-149 (152)
61 KOG4223 Reticulocalbin, calume 97.5 0.00058 1.3E-08 53.0 7.2 66 21-94 75-140 (325)
62 smart00054 EFh EF-hand, calciu 97.4 0.00029 6.3E-09 33.8 3.2 27 69-95 2-28 (29)
63 KOG2643 Ca2+ binding protein, 97.4 0.00058 1.3E-08 55.0 6.3 76 24-101 234-320 (489)
64 PF13499 EF-hand_7: EF-hand do 97.3 0.00027 5.9E-09 41.9 3.4 29 69-97 2-30 (66)
65 smart00054 EFh EF-hand, calciu 97.3 0.00037 8.1E-09 33.4 3.3 27 25-51 2-28 (29)
66 PF13833 EF-hand_8: EF-hand do 97.3 0.00044 9.4E-09 39.6 3.9 29 23-51 25-53 (54)
67 cd05022 S-100A13 S-100A13: S-1 97.0 0.0016 3.5E-08 41.7 4.4 47 7-53 27-77 (89)
68 KOG2643 Ca2+ binding protein, 96.6 0.0015 3.3E-08 52.7 2.9 31 68-98 426-456 (489)
69 cd05023 S-100A11 S-100A11: S-1 96.4 0.0057 1.2E-07 39.1 4.0 31 23-53 52-82 (89)
70 KOG0038 Ca2+-binding kinase in 96.4 0.012 2.5E-07 41.3 5.4 66 21-96 72-137 (189)
71 cd05026 S-100Z S-100Z: S-100Z 96.3 0.0071 1.5E-07 38.8 4.1 31 23-53 53-83 (93)
72 cd00052 EH Eps15 homology doma 96.3 0.0049 1.1E-07 36.2 2.8 26 70-95 2-27 (67)
73 cd05029 S-100A6 S-100A6: S-100 96.2 0.0078 1.7E-07 38.3 3.8 46 8-53 31-81 (88)
74 KOG3555 Ca2+-binding proteogly 96.2 0.0071 1.5E-07 47.6 4.2 60 23-94 250-309 (434)
75 cd00252 SPARC_EC SPARC_EC; ext 96.2 0.0079 1.7E-07 40.4 3.9 28 22-49 79-106 (116)
76 cd05024 S-100A10 S-100A10: A s 96.1 0.011 2.4E-07 38.1 4.1 31 23-53 48-78 (91)
77 KOG4578 Uncharacterized conser 96.1 0.0021 4.6E-08 50.3 0.9 66 23-95 333-398 (421)
78 KOG1955 Ral-GTPase effector RA 96.0 0.024 5.3E-07 46.7 6.3 68 19-96 227-294 (737)
79 PF14788 EF-hand_10: EF hand; 95.9 0.016 3.4E-07 33.3 3.7 31 22-52 20-50 (51)
80 KOG3866 DNA-binding protein of 95.9 0.017 3.6E-07 45.2 4.9 68 26-94 247-323 (442)
81 PF12763 EF-hand_4: Cytoskelet 95.8 0.009 2E-07 39.3 2.9 47 6-52 26-72 (104)
82 cd00051 EFh EF-hand, calcium b 95.8 0.018 3.8E-07 32.2 3.7 27 70-96 3-29 (63)
83 cd05027 S-100B S-100B: S-100B 95.7 0.015 3.3E-07 36.9 3.6 47 7-53 28-81 (88)
84 smart00027 EH Eps15 homology d 95.7 0.025 5.5E-07 36.2 4.6 29 67-95 10-38 (96)
85 cd05030 calgranulins Calgranul 95.7 0.021 4.5E-07 36.2 4.1 32 22-53 50-81 (88)
86 PF09279 EF-hand_like: Phospho 95.7 0.021 4.6E-07 35.5 4.0 63 25-94 2-68 (83)
87 cd05025 S-100A1 S-100A1: S-100 95.2 0.035 7.6E-07 35.2 4.0 32 22-53 51-82 (92)
88 cd05031 S-100A10_like S-100A10 95.2 0.037 8E-07 35.3 4.0 32 22-53 50-81 (94)
89 KOG1029 Endocytic adaptor prot 95.1 0.053 1.2E-06 46.9 5.5 63 22-94 194-256 (1118)
90 cd00213 S-100 S-100: S-100 dom 95.0 0.06 1.3E-06 33.7 4.4 28 68-95 9-38 (88)
91 KOG4666 Predicted phosphate ac 94.8 0.05 1.1E-06 42.7 4.4 62 24-94 297-358 (412)
92 KOG2562 Protein phosphatase 2 94.5 0.065 1.4E-06 43.7 4.6 65 24-91 352-420 (493)
93 KOG0169 Phosphoinositide-speci 94.3 0.21 4.6E-06 43.0 7.3 68 21-96 134-201 (746)
94 KOG4666 Predicted phosphate ac 94.0 0.13 2.8E-06 40.6 5.0 66 23-95 259-324 (412)
95 KOG2562 Protein phosphatase 2 93.8 0.18 3.9E-06 41.2 5.7 34 69-102 353-386 (493)
96 KOG4251 Calcium binding protei 93.8 0.12 2.7E-06 39.2 4.5 72 23-94 236-308 (362)
97 PF05042 Caleosin: Caleosin re 93.7 0.41 8.8E-06 34.4 6.7 72 24-95 8-124 (174)
98 PF14658 EF-hand_9: EF-hand do 93.2 0.14 3.1E-06 30.9 3.3 48 4-51 16-64 (66)
99 KOG0041 Predicted Ca2+-binding 93.1 0.12 2.6E-06 38.1 3.4 28 69-96 101-128 (244)
100 KOG0751 Mitochondrial aspartat 92.9 0.34 7.4E-06 40.2 6.1 65 21-95 71-136 (694)
101 KOG0035 Ca2+-binding actin-bun 92.3 0.6 1.3E-05 41.2 7.1 74 20-97 744-818 (890)
102 PF10591 SPARC_Ca_bdg: Secrete 92.2 0.11 2.4E-06 34.6 2.1 42 6-47 71-112 (113)
103 PF09069 EF-hand_3: EF-hand; 91.9 1.2 2.5E-05 28.6 6.5 69 22-94 2-74 (90)
104 PRK12309 transaldolase/EF-hand 91.6 0.21 4.6E-06 40.2 3.4 28 25-52 359-386 (391)
105 KOG0042 Glycerol-3-phosphate d 90.9 0.52 1.1E-05 39.8 5.1 67 23-97 593-659 (680)
106 KOG4347 GTPase-activating prot 90.3 0.56 1.2E-05 39.9 4.8 58 23-89 555-612 (671)
107 KOG2243 Ca2+ release channel ( 90.1 0.6 1.3E-05 43.5 5.0 59 27-94 4061-4119(5019)
108 KOG1707 Predicted Ras related/ 89.8 2.4 5.1E-05 36.0 8.0 29 67-95 315-343 (625)
109 KOG0751 Mitochondrial aspartat 89.6 0.47 1E-05 39.5 3.8 76 23-98 108-210 (694)
110 KOG4065 Uncharacterized conser 89.2 0.45 9.7E-06 32.2 2.8 34 15-48 109-142 (144)
111 PF05517 p25-alpha: p25-alpha 85.0 7.4 0.00016 27.2 7.2 73 25-102 4-76 (154)
112 KOG0040 Ca2+-binding actin-bun 84.7 3.4 7.4E-05 38.9 6.5 64 21-91 2294-2357(2399)
113 KOG1029 Endocytic adaptor prot 84.7 6.2 0.00013 34.8 7.8 66 24-100 17-82 (1118)
114 PF05042 Caleosin: Caleosin re 84.3 8.4 0.00018 27.7 7.3 66 23-93 96-164 (174)
115 KOG0039 Ferric reductase, NADH 83.3 1.8 4E-05 37.0 4.2 87 9-96 4-90 (646)
116 KOG4578 Uncharacterized conser 83.2 1 2.3E-05 35.6 2.5 41 11-51 358-398 (421)
117 PF00404 Dockerin_1: Dockerin 81.9 2.3 4.9E-05 19.8 2.4 16 33-48 1-16 (21)
118 KOG4004 Matricellular protein 81.6 0.64 1.4E-05 34.3 0.8 56 28-93 192-248 (259)
119 KOG1955 Ral-GTPase effector RA 80.8 1.7 3.7E-05 36.3 3.0 48 6-53 248-295 (737)
120 PF09068 EF-hand_2: EF hand; 80.7 15 0.00032 24.9 7.7 71 24-94 42-124 (127)
121 PF08726 EFhand_Ca_insen: Ca2+ 79.4 2.2 4.8E-05 25.9 2.5 26 23-49 6-31 (69)
122 KOG1707 Predicted Ras related/ 78.2 2.8 6.1E-05 35.6 3.5 69 15-93 307-375 (625)
123 KOG3555 Ca2+-binding proteogly 78.0 2.6 5.7E-05 33.6 3.1 68 22-94 210-277 (434)
124 KOG0998 Synaptic vesicle prote 77.2 1.2 2.6E-05 39.3 1.3 70 23-102 283-352 (847)
125 PLN02952 phosphoinositide phos 73.4 9.3 0.0002 32.7 5.5 54 36-96 13-66 (599)
126 PF14513 DAG_kinase_N: Diacylg 70.2 8.7 0.00019 26.5 3.9 52 37-98 5-63 (138)
127 PF09069 EF-hand_3: EF-hand; 69.3 17 0.00036 23.3 4.8 41 67-108 3-46 (90)
128 PF08414 NADPH_Ox: Respiratory 69.3 29 0.00062 22.7 6.1 62 23-97 30-94 (100)
129 PF12174 RST: RCD1-SRO-TAF4 (R 68.1 19 0.00041 21.9 4.7 50 38-98 7-56 (70)
130 PF09279 EF-hand_like: Phospho 68.1 11 0.00023 23.0 3.7 25 70-95 3-27 (83)
131 KOG4347 GTPase-activating prot 66.5 17 0.00038 31.2 5.6 30 68-97 556-585 (671)
132 KOG2419 Phosphatidylserine dec 60.1 7.1 0.00015 33.8 2.2 75 24-98 438-536 (975)
133 PF09068 EF-hand_2: EF hand; 56.5 14 0.0003 25.0 2.9 30 23-52 97-126 (127)
134 PLN02228 Phosphoinositide phos 54.6 55 0.0012 27.9 6.6 68 20-95 21-92 (567)
135 PLN02952 phosphoinositide phos 53.5 98 0.0021 26.6 7.9 70 22-94 37-109 (599)
136 PLN02222 phosphoinositide phos 52.2 53 0.0012 28.1 6.2 65 23-95 25-90 (581)
137 KOG2871 Uncharacterized conser 51.1 11 0.00025 30.4 1.9 32 22-53 308-339 (449)
138 PLN02223 phosphoinositide phos 51.0 1E+02 0.0022 26.2 7.6 72 23-95 16-92 (537)
139 PF09373 PMBR: Pseudomurein-bi 50.6 24 0.00052 18.0 2.6 19 80-98 1-19 (33)
140 KOG4004 Matricellular protein 50.5 11 0.00023 28.0 1.6 27 23-49 222-248 (259)
141 PF06226 DUF1007: Protein of u 43.6 33 0.00071 25.1 3.3 31 71-101 54-84 (212)
142 PLN02230 phosphoinositide phos 43.1 1.1E+02 0.0024 26.3 6.7 72 22-95 28-102 (598)
143 PF01023 S_100: S-100/ICaBP ty 43.1 55 0.0012 17.8 3.4 26 70-95 9-36 (44)
144 KOG0998 Synaptic vesicle prote 43.1 15 0.00032 32.8 1.6 65 23-97 11-75 (847)
145 PF04157 EAP30: EAP30/Vps36 fa 41.2 1.3E+02 0.0028 22.0 6.2 69 25-93 116-200 (223)
146 cd07313 terB_like_2 tellurium 38.5 11 0.00023 24.0 0.0 52 37-95 13-65 (104)
147 KOG3442 Uncharacterized conser 36.4 72 0.0016 21.8 3.8 45 35-84 51-95 (132)
148 KOG3866 DNA-binding protein of 36.1 32 0.00069 27.4 2.3 32 71-102 248-279 (442)
149 PF12588 PSDC: Phophatidylseri 36.0 68 0.0015 22.2 3.7 43 10-52 7-55 (141)
150 PF05517 p25-alpha: p25-alpha 34.1 54 0.0012 22.8 3.1 51 3-53 16-71 (154)
151 KOG1954 Endocytosis/signaling 33.5 71 0.0015 26.3 3.9 24 68-91 478-501 (532)
152 PF07492 Trehalase_Ca-bi: Neut 33.3 9.8 0.00021 19.3 -0.6 18 71-88 3-20 (30)
153 PF06226 DUF1007: Protein of u 31.7 47 0.001 24.3 2.6 24 29-52 56-79 (212)
154 COG3793 TerB Tellurite resista 31.0 1.5E+02 0.0032 20.7 4.7 58 36-93 37-96 (144)
155 KOG0169 Phosphoinositide-speci 31.0 2.4E+02 0.0051 25.1 6.8 62 23-96 172-233 (746)
156 COG5562 Phage envelope protein 30.3 39 0.00086 23.3 1.8 24 72-95 77-100 (137)
157 cd08030 LA_like_plant La-motif 29.1 1.2E+02 0.0026 19.3 3.8 48 72-119 24-88 (90)
158 PF12631 GTPase_Cys_C: Catalyt 29.0 51 0.0011 19.8 2.0 48 24-76 24-72 (73)
159 PF00113 Enolase_C: Enolase, C 28.8 45 0.00097 25.9 2.1 40 82-129 131-170 (295)
160 PF09851 SHOCT: Short C-termin 27.5 84 0.0018 15.6 2.3 16 81-96 14-29 (31)
161 PF08976 DUF1880: Domain of un 27.4 56 0.0012 22.0 2.1 28 67-94 7-34 (118)
162 KOG4301 Beta-dystrobrevin [Cyt 26.8 2E+02 0.0044 23.2 5.3 66 24-98 111-176 (434)
163 TIGR01848 PHA_reg_PhaR polyhyd 26.5 1.9E+02 0.0042 19.1 4.4 66 30-95 10-77 (107)
164 smart00517 PolyA C-terminal do 26.4 1E+02 0.0022 18.4 2.9 27 6-32 35-61 (64)
165 PF07879 PHB_acc_N: PHB/PHA ac 25.8 57 0.0012 19.5 1.7 22 30-51 10-31 (64)
166 KOG4070 Putative signal transd 25.6 63 0.0014 22.9 2.1 29 26-54 60-88 (180)
167 PTZ00451 dephospho-CoA kinase; 24.3 1.8E+02 0.0039 21.8 4.6 48 2-49 26-74 (244)
168 KOG4403 Cell surface glycoprot 24.1 74 0.0016 26.4 2.6 30 67-96 68-97 (575)
169 KOG1954 Endocytosis/signaling 23.9 83 0.0018 25.9 2.8 32 20-51 474-505 (532)
170 cd02977 ArsC_family Arsenate R 23.8 2E+02 0.0043 18.1 5.1 60 29-95 26-85 (105)
171 PRK14456 ribosomal RNA large s 23.0 2.9E+02 0.0064 22.1 5.8 58 40-109 23-80 (368)
172 PF09454 Vps23_core: Vps23 cor 21.5 1E+02 0.0022 18.3 2.3 17 81-97 37-53 (65)
173 COG5568 Uncharacterized small 21.4 77 0.0017 19.8 1.7 25 105-129 57-81 (85)
174 PF12486 DUF3702: ImpA domain 21.3 1.4E+02 0.003 20.8 3.2 30 24-53 70-99 (148)
175 KOG2243 Ca2+ release channel ( 20.9 71 0.0015 31.0 2.0 25 71-95 4061-4085(5019)
176 PF09862 DUF2089: Protein of u 20.6 2E+02 0.0043 19.2 3.7 21 70-93 92-112 (113)
177 COG3285 Predicted eukaryotic-t 20.5 2E+02 0.0044 22.5 4.2 32 84-115 24-55 (299)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.59 E-value=7.4e-15 Score=88.71 Aligned_cols=66 Identities=32% Similarity=0.507 Sum_probs=57.8
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
+++++|+.+|+|++|+|+.+||+.++..++. ..+.....+.+..+|+.+|+|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999863 22356667788899999999999999999999875
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.33 E-value=1.1e-11 Score=79.78 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCC-CCCCcccHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDF-VKNGGLSRSTLRERFHR-FFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAM 100 (130)
Q Consensus 23 ~~l~~~F~~~D~-d~dG~Is~~El~~~l~~-lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~ 100 (130)
..+..+|+.||+ +++|+|+.+||+.+++. ++. ..... ..+..+|+.+|.|+||.|+|+||..++..+....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~----~ls~~---~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPH----LLKDV---EGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh----hccCH---HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 468999999999 99999999999999998 752 11120 3356799999999999999999999999876544
Q ss_pred H
Q 032907 101 A 101 (130)
Q Consensus 101 ~ 101 (130)
.
T Consensus 81 ~ 81 (89)
T cd05022 81 K 81 (89)
T ss_pred H
Confidence 3
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=2.2e-11 Score=85.82 Aligned_cols=66 Identities=29% Similarity=0.462 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
....+.++|+.||.|+||+|+..||+.+++.+|. ..+.++ +..+++.+|.|++|+|++++|++++.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge----~~~dee----v~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGE----RLSDEE----VEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc----cCCHHH----HHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 3568999999999999999999999999999874 333444 45699999999999999999999765
No 4
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.26 E-value=8.7e-11 Score=75.35 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=56.4
Q ss_pred HHHHHHhhhcC-CCCCC-cccHHHHHHHHHh-----hhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLD-FVKNG-GLSRSTLRERFHR-----FFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D-~d~dG-~Is~~El~~~l~~-----lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+.++|+.|| .|++| .|+.+||+.+++. ++. ..++.+ +..+++.+|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~----~~~~~~----v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE----IKEQEV----VDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC----CCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56899999998 89999 5999999999998 552 122333 456999999999999999999999887
Q ss_pred HHHH
Q 032907 96 IMLA 99 (130)
Q Consensus 96 ~~~~ 99 (130)
+...
T Consensus 80 ~~~~ 83 (88)
T cd05027 80 VTTA 83 (88)
T ss_pred HHHH
Confidence 6543
No 5
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.23 E-value=4.7e-11 Score=77.25 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=55.0
Q ss_pred HHHHHHhhhcC-CCCCC-cccHHHHHHHHHhh-hc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLD-FVKNG-GLSRSTLRERFHRF-FD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 23 ~~l~~~F~~~D-~d~dG-~Is~~El~~~l~~l-g~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
..+.++|..|| +|++| +|+..||+.++... +. +. ..+ ....+..+++.+|.|+||.|+|+||+.++..+.-
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~--~~~---~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS--SQK---DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc--ccc---CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45778899999 79998 59999999999763 21 00 111 1234567999999999999999999999987754
No 6
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.19 E-value=1.5e-10 Score=74.48 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=56.2
Q ss_pred HHHHHHhhhcC-CCCCC-cccHHHHHHHHHh-hhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLD-FVKNG-GLSRSTLRERFHR-FFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 23 ~~l~~~F~~~D-~d~dG-~Is~~El~~~l~~-lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
..++++|+.|| .+++| .|+..||+.+++. +|. ++. .++. ..++.+|+.+|.|++|.|+|+||+.++..+..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~-~~s~----~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA-QKDA----DAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC-CCCH----HHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 56999999997 99999 5999999999985 542 111 0112 23567999999999999999999999887654
No 7
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.19 E-value=1.6e-10 Score=69.32 Aligned_cols=63 Identities=29% Similarity=0.412 Sum_probs=53.4
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 26 DECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 26 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
+++|+.+|+|++|.|+.+|++.++..++ .+.. .+..+|..+|.+++|.|+++||+.++..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g------~~~~----~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG------LPRS----VLAQIWDLADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC------CCHH----HHHHHHHHhcCCCCCcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998875 2322 3466999999999999999999999876543
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-10 Score=81.25 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=55.9
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..++++|+.||+|++|+||.+||+.++..+|. ..+. +.+..+++.+|.|+||.|+|+||+++|..
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~----~~~~----~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGE----KLTD----EECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC----cCCH----HHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 47999999999999999999999999999974 2222 33466999999999999999999998863
No 9
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.16 E-value=4.4e-10 Score=72.81 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
....++.+|+.+|.|++|.|+.+|++.++...+ .+..+ +..+|..+|.+++|.|+++||+.++..+..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~------~~~~e----v~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG------LPQTL----LAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC------CCHHH----HHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 345799999999999999999999999998874 33333 456999999999999999999998886543
No 10
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=4.1e-10 Score=71.66 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhcCC--CCCCcccHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 20 KFENCVDECFEKLDF--VKNGGLSRSTLRERFHR-FFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 20 ~~~~~l~~~F~~~D~--d~dG~Is~~El~~~l~~-lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+....++.+|..+|+ |++|.|+.+||..+++. ++. ..+.......+..++..+|.+++|.|+|+||+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~----~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN----FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh----hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 344568999999999 89999999999999976 432 11100112345679999999999999999999998876
Q ss_pred HH
Q 032907 97 ML 98 (130)
Q Consensus 97 ~~ 98 (130)
..
T Consensus 81 ~~ 82 (88)
T cd00213 81 AV 82 (88)
T ss_pred HH
Confidence 44
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.14 E-value=4.9e-10 Score=72.38 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=54.1
Q ss_pred HHHHHHHhhhcCC-CC-CCcccHHHHHHHHHh-hhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDF-VK-NGGLSRSTLRERFHR-FFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 22 ~~~l~~~F~~~D~-d~-dG~Is~~El~~~l~~-lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
...++.+|..||. |+ +|+|+..||+.++.. ++. ++. ..+. ..+..+|+.+|.+++|.|+|+||+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~----~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDP----MAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccH----HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3568999999997 97 699999999999986 321 011 1122 345679999999999999999999988754
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=4.8e-10 Score=78.18 Aligned_cols=69 Identities=26% Similarity=0.329 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
....++.+|+.+|+|++|+|+..||..+++.+|. .++..+ +..++..+|.+++|.|+++||+.++....
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~----~~t~~e----l~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQ----NPTEEE----LRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC----CCCHHH----HHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 3457999999999999999999999999999984 222444 45699999999999999999999998654
No 13
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.12 E-value=3.7e-10 Score=75.95 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 20 KFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 20 ~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
.....+..+|..+|+|+||.|+.+||..+. ++ .. ...+..+|+.+|.|+||.||++||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~------~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD------PN----EHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc------ch----HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 455679999999999999999999999876 32 21 1334579999999999999999999987
No 14
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.12 E-value=4.5e-10 Score=81.24 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=58.4
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
.+++-+|+.||.+++|+|+.+|+..++..+...+... ..+....++..+|.++|.|+||+|+++||++++..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 4788899999999999999999999998874200000 13445567789999999999999999999999874
No 15
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.08 E-value=1.8e-09 Score=69.19 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCC-CC-CCcccHHHHHHHHHh---hhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDF-VK-NGGLSRSTLRERFHR---FFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 23 ~~l~~~F~~~D~-d~-dG~Is~~El~~~l~~---lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
..+-.+|..||. |+ +|+|+.+||+.++.. +|. ..+..+ +.++|+.+|.|++|.|+|+||+.++..+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~----k~t~~e----v~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS----KLQDAE----IAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC----CCCHHH----HHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 457889999998 78 899999999999974 342 222333 45689999999999999999999998775
Q ss_pred HH
Q 032907 98 LA 99 (130)
Q Consensus 98 ~~ 99 (130)
..
T Consensus 82 ~~ 83 (88)
T cd05029 82 LI 83 (88)
T ss_pred HH
Confidence 43
No 16
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.05 E-value=5.7e-10 Score=80.97 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCC--hHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQP--IEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~--~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
.+++++.+|+.||.||||+|++.|+-.+++.+.. .+....| ..........+|+.+|.|+||.||++||...+..
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4467888999999999999999999999988755 3321111 2233456678999999999999999999998763
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.99 E-value=4e-09 Score=67.73 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=55.2
Q ss_pred HHHHHHHhhh-cCCCCCC-cccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 22 ENCVDECFEK-LDFVKNG-GLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 22 ~~~l~~~F~~-~D~d~dG-~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
...+..+|+. +|++|+| .|+.+||+.++..... .. ..+ .....+..+++.+|.|+||.|+|+||+.++..+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~--~~~--~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT--KNQ--KDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh--cCC--CCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3568899999 7888986 9999999999987631 00 000 01134567999999999999999999999987743
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.96 E-value=4.5e-09 Score=60.68 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=50.8
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
+..+|+.+|.+++|.|+..|+..++..++. ..+. ..+..+|..+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~----~~~~----~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE----GLSE----EEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC----CCCH----HHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 578899999999999999999999998862 1222 234569999999999999999998765
No 19
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.95 E-value=4.3e-09 Score=60.98 Aligned_cols=52 Identities=31% Similarity=0.533 Sum_probs=42.8
Q ss_pred CCCcccHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 36 KNGGLSRSTLRERFHRFFDMEDEA-QPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 36 ~dG~Is~~El~~~l~~lg~~~~~~-~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
++|.|+.++|+.++..+|. . .++.+ +..+|..+|.|++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~----~~~s~~e----~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI----KDLSEEE----VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS----SSSCHHH----HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC----CCCCHHH----HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999977763 2 22333 467999999999999999999999874
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=72.04 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHH--------------------------------
Q 032907 18 KAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEI-------------------------------- 65 (130)
Q Consensus 18 ~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~-------------------------------- 65 (130)
..+..+.++++|..+|+|++|.|+..||..+++.+|. .++..++
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~----~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF----NPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC----CCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCc
Confidence 3455678999999999999999999999999998874 1111111
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 66 DRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 66 ~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
.+.+...|+.+|.|+||+|+..|++.++..+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhh
Confidence 1345667777777777777777776666643
No 21
>PTZ00183 centrin; Provisional
Probab=98.84 E-value=2.2e-08 Score=69.05 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=48.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+..+|+.+|.+++|.|+..||..++..++. ..... .+..+|..+|.+++|.|+++||..++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~----~l~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGE----TITDE----ELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC----CCCHH----HHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 45778888888888888888888888877652 12222 2355888888888888888888887753
No 22
>PTZ00184 calmodulin; Provisional
Probab=98.83 E-value=2.5e-08 Score=67.87 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=44.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..+..+|+.+|.+++|.|+..|+..++..++. ..+. ..+..+|..+|.+++|.|+++||+.++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~----~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGE----KLTD----EEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC----CCCH----HHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 45677788888888888888888877777642 1122 2234577778888888888888877654
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-08 Score=73.42 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMA 101 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~ 101 (130)
......+|+.+|.|+||.|++.||..++..+. .. ..++.++..|+.+|.|+||+|+++|+..++..++..++
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~------rG--t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTS------RG--TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc------CC--cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 35678899999999999999999888887763 21 22345567899999999999999999999998877655
Q ss_pred h
Q 032907 102 R 102 (130)
Q Consensus 102 ~ 102 (130)
.
T Consensus 135 ~ 135 (193)
T KOG0044|consen 135 S 135 (193)
T ss_pred c
Confidence 4
No 24
>PTZ00183 centrin; Provisional
Probab=98.79 E-value=6.6e-08 Score=66.70 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
...+..+|..+|.+++|.|+..||..++..++. ..+. ..+..+|..+|.+++|.|+++||..++..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~----~~~~----~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSLGF----EPKK----EEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC----CCCH----HHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 356889999999999999999999999987752 1111 22345677777777777777777665543
No 25
>PTZ00184 calmodulin; Provisional
Probab=98.77 E-value=7e-08 Score=65.66 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=50.9
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
..+...|..+|.+++|.|+..||..++..++. .+. .+.+..+|..+|.+++|.|+++||+.++...
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-----~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-----NPT---EAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-----CCC---HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 56889999999999999999999999887752 221 1234568888888888888888888776643
No 26
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=1.1e-07 Score=60.71 Aligned_cols=72 Identities=15% Similarity=0.311 Sum_probs=53.9
Q ss_pred HHHHHHhhhcCCC--CCCcccHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFV--KNGGLSRSTLRERFHR-FFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 23 ~~l~~~F~~~D~d--~dG~Is~~El~~~l~~-lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
..+...|..|+.. ++|+|+.+||+.++.. ++. ..+.......+..+|..+|.+++|.|+|+||+.++..+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~----~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN----FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH----hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4578899999865 4899999999999974 331 0110001244567999999999999999999999887643
No 27
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.75 E-value=6.6e-08 Score=67.51 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHH-----------------------------HHHH
Q 032907 19 AKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEI-----------------------------DRLY 69 (130)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~-----------------------------~~~~ 69 (130)
+...+.++++|..+|.|+||.|+.++|+..+..+|. ..+.+++ ++.+
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk----~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK----IASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 345567999999999999999999999999999985 1112222 2456
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
...|+.+|.+++|.|..+.++.++....
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 7789999999999999999999888654
No 28
>PF14658 EF-hand_9: EF-hand domain
Probab=98.71 E-value=7.1e-08 Score=58.43 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=52.9
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHHH
Q 032907 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRN-GNIDRSEFRSLMEEI 96 (130)
Q Consensus 27 ~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~d-G~I~~~EF~~~l~~~ 96 (130)
.+|+.||+++.|.|...++..+|+..+. ..|. + ..++.+.+++|+++. |.|+++.|...|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~----~~p~-e--~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTG----RSPE-E--SELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcC----CCCc-H--HHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3699999999999999999999999873 2442 2 235679999999988 999999999999875
No 29
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.3e-07 Score=66.36 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCC-hHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 19 AKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQP-IEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~-~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
.+..+.++..|..||.+++|+|+.+||..++..+|. .+ ..+ +.+++..+|+++.|.|+|++|+..|...+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-----E~~k~e----i~kll~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGF-----EPKKEE----ILKLLADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-----CcchHH----HHHHHHhhhhccCceechHHHHHHHHHHH
Confidence 345578999999999999999999999999999984 33 333 34577777777788888888877766543
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.2e-07 Score=66.61 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
...+..+|+.+|-|++|+||..+|+.+.+.+|. ..+..+ +..++.++|.|+||.|.-+||.+.|+.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge----nltD~E----l~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE----NLTDEE----LMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc----cccHHH----HHHHHHHhcccccccccHHHHHHHHhc
Confidence 356899999999999999999999999999973 233444 456899999999999999999998864
No 31
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=2.7e-08 Score=50.91 Aligned_cols=27 Identities=37% Similarity=0.785 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
++.+|+.+|+|+||+|+++||+.+|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 457999999999999999999999875
No 32
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.65 E-value=3.6e-08 Score=50.49 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=25.9
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhh
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
++++|+.+|+|+||+|+++||..+++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6889999999999999999999998764
No 33
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.65 E-value=1.8e-07 Score=68.06 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
....+..+|+.||.+.||+|+..||+.+|..+|. | +..--++.+++++|.|.||+|+|-||.-.++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga------p--QTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA------P--QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCC------c--hhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 3456788999999999999999999999999973 3 222345779999999999999999998777654
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=98.57 E-value=3.3e-07 Score=76.99 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=55.3
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
..+..+|+.+|.|++|.|+.+||..++..++. ..+. +.+..+|+.+|.|++|+|+++||..++...
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~----~~se----EEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGN----LVAA----NKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc----CCCH----HHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 35899999999999999999999999988752 1222 235679999999999999999999998874
No 35
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.54 E-value=3.6e-07 Score=72.55 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=64.4
Q ss_pred hcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 15 VDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
.+-..+.+.+++.+|+.+|.+++|.++..++.+.+..+.. .+|.. .....+|..+|.|.||.+||+||.+++.
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~----~~~~~---~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDH----PKPNY---EAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCC----CCCch---HHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 3445677889999999999999999999999999988852 12322 2345699999999999999999999988
Q ss_pred HHHHHHHh
Q 032907 95 EIMLAMAR 102 (130)
Q Consensus 95 ~~~~~~~~ 102 (130)
.--.+++.
T Consensus 79 ~~E~~l~~ 86 (463)
T KOG0036|consen 79 NKELELYR 86 (463)
T ss_pred HhHHHHHH
Confidence 65554443
No 36
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.54 E-value=3.2e-07 Score=63.83 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=62.4
Q ss_pred hhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 14 FVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 14 ~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
.+......+-++.-+|+.||-|+|++|-..++...+.++-.. ...+.+..-++.+++.+.|.|+||+|++.||..++
T Consensus 99 V~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~---eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 99 VFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD---ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 344455566678889999999999999999999999887420 11255666788999999999999999999998876
Q ss_pred H
Q 032907 94 E 94 (130)
Q Consensus 94 ~ 94 (130)
.
T Consensus 176 ~ 176 (189)
T KOG0038|consen 176 L 176 (189)
T ss_pred H
Confidence 5
No 37
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.48 E-value=1.1e-06 Score=64.56 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
..++.+|+.+|+|++|.|+..||+.+|..+|. ..++ +.++.+++.+|.-++|.|.|++|+.++-.+
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy----~Lsp----q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGY----RLSP----QFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCc----CCCH----HHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 46899999999999999999999999999974 2222 344569999998889999999999986543
No 38
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=1.9e-07 Score=48.23 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHH-hhh
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFH-RFF 53 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~-~lg 53 (130)
+++.+|+.+|+|+||+|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 564
No 39
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.45 E-value=7.7e-07 Score=71.03 Aligned_cols=62 Identities=19% Similarity=0.397 Sum_probs=51.6
Q ss_pred hcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 15 VDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
++....+...+..+|+.+|.|+||.|+.+||.. . ..+|..+|.|+||.|+++||...+.
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----~-----------------~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG----S-----------------DAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----H-----------------HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 344555667789999999999999999999942 1 2489999999999999999999988
Q ss_pred HHH
Q 032907 95 EIM 97 (130)
Q Consensus 95 ~~~ 97 (130)
..+
T Consensus 385 ~~~ 387 (391)
T PRK12309 385 AAL 387 (391)
T ss_pred HHH
Confidence 654
No 40
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.40 E-value=8.9e-07 Score=70.35 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=62.9
Q ss_pred hHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHH
Q 032907 10 TVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEF 89 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF 89 (130)
.+.+|..+..+.+..+.++|..+|.++||.|+..|+...++.+|. .-. ++...++|+.+|+++++.|+++||
T Consensus 69 Dy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-----~l~---de~~~k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 69 DYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI-----QLS---DEKAAKFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred cHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCC-----ccC---HHHHHHHHHHhccCCCeeeccHHH
Confidence 445555566666788999999999999999999999999999973 211 133456999999999999999999
Q ss_pred HHHHH
Q 032907 90 RSLME 94 (130)
Q Consensus 90 ~~~l~ 94 (130)
...+.
T Consensus 141 rd~~l 145 (463)
T KOG0036|consen 141 RDHLL 145 (463)
T ss_pred Hhhhh
Confidence 98765
No 41
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.35 E-value=3.5e-06 Score=58.01 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHH----------------------------------
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEID---------------------------------- 66 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~---------------------------------- 66 (130)
....++++|..||..+||+|+...+..+++.+|.. ++..++.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n----PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN----PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC----CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 34679999999999999999999999999999851 1111110
Q ss_pred ---HHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHH
Q 032907 67 ---RLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMA 101 (130)
Q Consensus 67 ---~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~ 101 (130)
+.+-+-++.+|++++|.|...|+++++..+-+++.
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ 122 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLT 122 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhcc
Confidence 11234578899999999999999888877655544
No 42
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.33 E-value=4e-06 Score=53.97 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=51.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhh-hc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRF-FD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~l-g~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
..+-..|..|- .+.|.++..||+.+++.- .. ...+.. + ..+..+|+.+|.|+||.|+|.||..++..+..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d-~----~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQND-P----MAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCC-H----HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 34667888886 445799999999999753 11 111111 1 34567999999999999999999999987643
No 43
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.30 E-value=7.7e-07 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.4
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHH
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERF 49 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l 49 (130)
++++|+.+|.|+||.||.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999999854
No 44
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.30 E-value=2e-06 Score=69.13 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=54.6
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
..+..+|+.+|+|++|.||.+||+.+.+.++. +.. + -.+..+.++-+.+|-|+||+|++.||.+..+-+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~---~--i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG---A--ISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC---C--cCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 35788999999999999999999999998874 211 1 111234567889999999999999999988743
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=98.30 E-value=4e-06 Score=70.54 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
.+.++++|..+|+|++|.+ +..++..+|. ..|.++....++.+|+.+|.|++|.|+++||..++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3678999999999999997 8888888861 13323322356789999999999999999999998753
No 46
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.26 E-value=1.4e-06 Score=43.02 Aligned_cols=24 Identities=38% Similarity=0.782 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
+.+|+.+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 468999999999999999998864
No 47
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.24 E-value=1e-06 Score=58.99 Aligned_cols=63 Identities=25% Similarity=0.347 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032907 19 AKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRS 91 (130)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~ 91 (130)
......+...|..+|.|+||.|+..|+..+...+. ++..= ++.+|+.+|.|+||.|+..||..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~------~~e~C----~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM------PPEHC----ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS------TTGGG----HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh------hhHHH----HHHHHHHcCCCCCCCCCHHHHcc
Confidence 34456788899999999999999999998655441 22211 24589999999999999999975
No 48
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.22 E-value=1.3e-05 Score=52.95 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAM 100 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~ 100 (130)
...+..+|..+|. ++|.|+-.+.+.++...+ .+. +.+..|+...|.|++|+++++||+-.|.-+....
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~------L~~----~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG------LPR----DVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT------SSH----HHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC------CCH----HHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 3578999999985 689999999999998775 332 3456799999999999999999999988654433
No 49
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.16 E-value=1e-05 Score=59.42 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc--C------------CCCCC---ChHHHH------HHHHHHHHHhcCC
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD--M------------EDEAQ---PIEEID------RLYNNIFERFDED 79 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~--~------------~~~~~---~~~e~~------~~~~~if~~~D~d 79 (130)
..+..+|...|+|+.|+|+.+|++.++....- + +.+.. ...|.. ..|+.+|+.+|+|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45888999999999999999999998763221 0 00000 012222 2345677777777
Q ss_pred CCCcccHHHHHHHHHH
Q 032907 80 RNGNIDRSEFRSLMEE 95 (130)
Q Consensus 80 ~dG~I~~~EF~~~l~~ 95 (130)
++|.|+..|+...+..
T Consensus 137 ~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQ 152 (221)
T ss_pred CCCcccHHHHHHHHHH
Confidence 7777777777666553
No 50
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1e-05 Score=62.49 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMAR 102 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~ 102 (130)
.+-.+.|+..|.|+||.++.+||..++.-- .+ +....-++..-+...|+|+||+|+++||+.-|... .
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE------e~-p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~-----~ 230 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPE------EH-PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH-----E 230 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChh------hc-chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc-----c
Confidence 456789999999999999999999865211 01 12222356678899999999999999998876542 1
Q ss_pred ccCCCceEEeec
Q 032907 103 GIGDSLVLVALD 114 (130)
Q Consensus 103 ~~~~~~~~~~~~ 114 (130)
+-+..|-++..+
T Consensus 231 ~~~~epeWv~~E 242 (325)
T KOG4223|consen 231 GNEEEPEWVLTE 242 (325)
T ss_pred CCCCCccccccc
Confidence 234457776654
No 51
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.09 E-value=2.4e-05 Score=54.86 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=55.4
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
+..+..+|+.||.+++|.|..+.|+.+|...|. ...++++ ..+|+.+-.|..|.|+|.+|+..+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD----r~~~eEV----~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD----RFTDEEV----DEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc----cCCHHHH----HHHHHhCCcccCCceeHHHHHHHHH
Confidence 456899999999999999999999999998874 2334454 4589999999999999999998876
No 52
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.09 E-value=1.8e-05 Score=45.45 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 39 GLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 39 ~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+++++|++.+++.+.. .. .+..+..+|+.+|++++|.|+.+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI-----~~---~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-----EM---DDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-----Cc---CHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4789999999999852 11 12345679999999999999999999988754
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.05 E-value=6.5e-06 Score=42.37 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
++.+|+.+|.|+||+|+++||..+++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467999999999999999999999873
No 54
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.03 E-value=3.9e-05 Score=55.63 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
..++-.|+.+|.+++|+|+.+|+...+..+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 35567899999999999999999998887644
No 55
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=3e-05 Score=51.95 Aligned_cols=67 Identities=27% Similarity=0.313 Sum_probs=52.6
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHhhhc---CCCCCCC---hHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032907 26 DECFEKLDFVKNGGLSRSTLRERFHRFFD---MEDEAQP---IEEIDRLYNNIFERFDEDRNGNIDRSEFRSL 92 (130)
Q Consensus 26 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~~~~~---~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~ 92 (130)
-..|++.|-|+||+|+--|+..++.-.-. .+....| +.+...++..+.+.-|.|+||.|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 45899999999999999999988875532 2322222 5566677888999999999999999999764
No 56
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.86 E-value=3.1e-05 Score=69.63 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=55.8
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..+.-+|+.||++++|.++..+|+.+++.+|. ++. ....+.++.+..++..+|++.+|+|+..+|+++|-
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpm--vEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPM--VEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcc--cccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 45778999999999999999999999999986 211 00111223456799999999999999999999986
No 57
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.73 E-value=8.8e-05 Score=59.89 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=70.4
Q ss_pred eecchhHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCC-------C-----------------
Q 032907 5 VLNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEA-------Q----------------- 60 (130)
Q Consensus 5 ~~d~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~-------~----------------- 60 (130)
+...|.++++-+........+...|+.+|.++.|+|+...+..++..+-.+++|. .
T Consensus 446 ~vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l 525 (631)
T KOG0377|consen 446 IVEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNL 525 (631)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHh
Confidence 4566778888877777888899999999999999999999999998764333210 0
Q ss_pred ----ChHHH-----H------HHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 61 ----PIEEI-----D------RLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 61 ----~~~e~-----~------~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
+.+++ + .-++.+|+.+|+|++|.|+.+||.....-+..
T Consensus 526 ~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 526 DTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred hhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 00110 0 12467999999999999999999998765443
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.69 E-value=5.7e-05 Score=56.90 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..+.+..+|+..|.|.||+||..|+++-+..-.. .+ ..+..+.-+..|..+|+|+||.|+++||.--+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImekta----EH-fqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTA----EH-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHH----HH-HHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 4567899999999999999999999987654321 00 111112223479999999999999999976443
No 59
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.61 E-value=0.00036 Score=57.32 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=57.9
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLA 99 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~ 99 (130)
..++..|..+| |++|+|+..|+..++...+. .......+.++.+....+.|.+|.|+|+||+..+.++..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~-----~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKL-----PLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcc-----cccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 56899999999 99999999999999998753 1112233456779999999999999999999988777554
No 60
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.53 E-value=0.00048 Score=47.61 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=46.2
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
.+-+..+.||++++|.|...||+.+|..+|. .....+++. +.+ --.|.+|.|.|+.|++-+
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttlGe----kl~eeEVe~----Lla-g~eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTLGE----KLTEEEVEE----LLA-GQEDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHHHh----hccHHHHHH----HHc-cccccCCcCcHHHHHHHH
Confidence 4566788999999999999999999999984 333445443 322 235678999999998754
No 61
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00058 Score=52.97 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
-..++..+|..+|.++||+|+.+|++.-+.... ...+.....+-+..+|.|+||.|+++|+...+.
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~--------k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQ--------KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHH--------HHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 446799999999999999999999999876652 223333445678899999999999999877655
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.37 E-value=0.00029 Score=33.78 Aligned_cols=27 Identities=37% Similarity=0.738 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
++.+|+.+|.+++|.|++.||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 356899999999999999999998864
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00058 Score=54.98 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=51.4
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhc---CCC---C-CCC----hHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFD---MED---E-AQP----IEEIDRLYNNIFERFDEDRNGNIDRSEFRSL 92 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~---~~~---~-~~~----~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~ 92 (130)
..+-+|++||.||||.|+.+||..+.+.+.. ++. + ..+ ..++...+ .---+-++++++++++||.++
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL--~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSAL--LTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhH--HHHhhccCCCccccHHHHHHH
Confidence 3566899999999999999999988765432 111 0 001 11222111 234467899999999999999
Q ss_pred HHHHHHHHH
Q 032907 93 MEEIMLAMA 101 (130)
Q Consensus 93 l~~~~~~~~ 101 (130)
+.++..++-
T Consensus 312 ~e~Lq~Eil 320 (489)
T KOG2643|consen 312 QENLQEEIL 320 (489)
T ss_pred HHHHHHHHH
Confidence 988866554
No 64
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.34 E-value=0.00027 Score=41.94 Aligned_cols=29 Identities=28% Similarity=0.642 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
++.+|+.+|+|++|+|+.+||..++..+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 56799999999999999999999988764
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.33 E-value=0.00037 Score=33.37 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=24.4
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHh
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHR 51 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~ 51 (130)
++.+|+.+|.+++|.|+..||..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999998764
No 66
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.30 E-value=0.00044 Score=39.58 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHR 51 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~ 51 (130)
..+..+|..+|.|++|.|++.||..++..
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 45999999999999999999999998864
No 67
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.97 E-value=0.0016 Score=41.65 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=35.7
Q ss_pred cchhHHHhhcC-HHHH--H-HHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 7 NGSTVTKFVDD-KAKF--E-NCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 7 d~~~~~~~~~~-~~~~--~-~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
+...++.++.. ..++ . ..+..+|+.+|.|+||.|+++||..++..+.
T Consensus 27 ~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 27 TASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 34556666655 2222 2 5699999999999999999999999888774
No 68
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0015 Score=52.67 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 68 LYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 68 ~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
++.-+|..+|.|+||.|+.+||...|++.+.
T Consensus 426 VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 426 VVDVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred eeeeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 4456899999999999999999999997654
No 69
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.42 E-value=0.0057 Score=39.06 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
..+..+++.+|.|+||.|+++||..++..+.
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5688999999999999999999999887764
No 70
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.35 E-value=0.012 Score=41.34 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+.+++.++|. .||.|.+|+++|..++.-+.. ..+.++. +.-.|+.+|-|+|+.|-.+++...++.+
T Consensus 72 fk~ri~e~FS---eDG~GnlsfddFlDmfSV~sE-----~APrdlK--~~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 72 FKRRICEVFS---EDGRGNLSFDDFLDMFSVFSE-----MAPRDLK--AKYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHHHHHHhc---cCCCCcccHHHHHHHHHHHHh-----hChHHhh--hhheeEEeecCCCCcccHHHHHHHHHHH
Confidence 5567777776 599999999999998887742 2233433 2457999999999999999988877755
No 71
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.32 E-value=0.0071 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
..+.++++.+|.|+||.|++.||..++..+.
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999999988774
No 72
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.25 E-value=0.0049 Score=36.18 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+.+|..+|++++|.|+.+|+..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46899999999999999999998864
No 73
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.22 E-value=0.0078 Score=38.32 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=34.5
Q ss_pred chhHHHhhc-----CHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 8 GSTVTKFVD-----DKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 8 ~~~~~~~~~-----~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
...+++++. ....-...+.++|+.+|.|++|.|+++||..++..+.
T Consensus 31 ~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 31 KKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 345666663 1222345789999999999999999999998887764
No 74
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.20 E-value=0.0071 Score=47.64 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=48.3
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..+..+|..+|.|.||.++..||+.+-..- .+.=++.+|+..|+..||.|+-.||...+.
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk------------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK------------NEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC------------chhHHHHHHhhhcccccCccccchhhhhhc
Confidence 468999999999999999999999754221 112235599999999999999999998765
No 75
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.19 E-value=0.0079 Score=40.37 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.8
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERF 49 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l 49 (130)
...+..+|+.+|.|+||.||.+|+..++
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4567889999999999999999999998
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.13 E-value=0.011 Score=38.08 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
..+.++|+.+|.|+||.|++.||-.++..+.
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4588999999999999999999999887763
No 77
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.12 E-value=0.0021 Score=50.25 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=48.8
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+.+...|..+|+|+++.|...|++.+-.-+-. . .++ ..=.+.+|+.+|.|+|.+|+++||...+..
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k--~-s~~----rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLK--K-SKP----RKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHh--h-ccH----HHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45778899999999999999997654332211 0 112 122357999999999999999999887753
No 78
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.024 Score=46.73 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 19 AKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 19 ~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
.+..+++-.-|+.+-.|-+|+|+-.--+.++..- ..+..++ ..|++..|.|.||.|+..||++.+.-+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS------klpi~EL----shIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS------KLPIEEL----SHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhc------cCchHHH----HHHHhhcccCccccccHHHHHhhHhhe
Confidence 4566788999999999999999998888877665 3444444 458899999999999999999987644
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.93 E-value=0.016 Score=33.30 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=26.6
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhh
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
+.....+|+.+|+.++|.+..+||..+++.+
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 3568889999999999999999999988765
No 80
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.91 E-value=0.017 Score=45.16 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHhh-hc-CCCCCCChHHHH----HHH---HHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 26 DECFEKLDFVKNGGLSRSTLRERFHRF-FD-MEDEAQPIEEID----RLY---NNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 26 ~~~F~~~D~d~dG~Is~~El~~~l~~l-g~-~~~~~~~~~e~~----~~~---~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
+..|...|.|+||+++..|+.+++..- .. +.. ..+.+++. +++ ..+++.+|+|.|.-||.+||...-.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdp-kNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDP-KNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 457889999999999999999887542 22 111 22222222 222 3589999999999999999987654
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.85 E-value=0.009 Score=39.34 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred ecchhHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhh
Q 032907 6 LNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 6 ~d~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
..|.+...++....--...+..+|...|.|++|+++..||..++..+
T Consensus 26 isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 26 ISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp EEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 56777778777776667889999999999999999999999888765
No 82
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.80 E-value=0.018 Score=32.21 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
..+|..+|.+++|.|+++||..+++.+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 468999999999999999999998764
No 83
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.74 E-value=0.015 Score=36.94 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=34.3
Q ss_pred cchhHHHhhcC-----HH--HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 7 NGSTVTKFVDD-----KA--KFENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 7 d~~~~~~~~~~-----~~--~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
+...++.++.. .. .-...+.++++.+|.|++|.|++.||..++..+.
T Consensus 28 ~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 28 KKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred CHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 33456666654 11 1234599999999999999999999998887653
No 84
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.71 E-value=0.025 Score=36.15 Aligned_cols=29 Identities=17% Similarity=0.558 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+..+|..+|.+++|.|+.+|+..+++.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 35678999999999999999999999875
No 85
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.71 E-value=0.021 Score=36.21 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
...+..+|+.+|.|++|.|+++||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46799999999999999999999999887664
No 86
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.66 E-value=0.021 Score=35.47 Aligned_cols=63 Identities=17% Similarity=0.370 Sum_probs=44.9
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCC----CCCcccHHHHHHHHH
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDED----RNGNIDRSEFRSLME 94 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d----~dG~I~~~EF~~~l~ 94 (130)
+..+|..+- .+.+.+|.++|...|..-.. .+ ......+..++..+..+ ..+.+++++|..+|.
T Consensus 2 i~~if~~ys-~~~~~mt~~~f~~FL~~eQ~-----~~-~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYS-SDKEYMTAEEFRRFLREEQG-----EP-RLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHC-TTSSSEEHHHHHHHHHHTSS------T-TSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCcCCHHHHHHHHHHHhc-----cc-cCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 678899994 47899999999999976531 11 00123345567666544 479999999999985
No 87
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.25 E-value=0.035 Score=35.19 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
...+..+|+.+|.|++|.|++.||..++..+.
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 35689999999999999999999999887764
No 88
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.20 E-value=0.037 Score=35.26 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
...+..+|+.+|.+++|.|+++||..++...+
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 35689999999999999999999999887764
No 89
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.053 Score=46.90 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..+++.+|..+|+...|++|-..-+.+|...+ .|. ..+..|...-|.|+||+++.+||+-.|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~------Lpq----~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG------LPQ----NQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC------Cch----hhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 35799999999999999999999888886654 232 2234588889999999999999987765
No 90
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.96 E-value=0.06 Score=33.66 Aligned_cols=28 Identities=14% Similarity=0.495 Sum_probs=25.0
Q ss_pred HHHHHHHHhcC--CCCCcccHHHHHHHHHH
Q 032907 68 LYNNIFERFDE--DRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 68 ~~~~if~~~D~--d~dG~I~~~EF~~~l~~ 95 (130)
.+..+|..+|+ +++|.|+.+||..+++.
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 35679999999 89999999999999875
No 91
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.79 E-value=0.05 Score=42.74 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
.++-+|+.|+.+.||.+...+|..+++.... .+ ++ .+..+|...+...+|+|++++|.+++.
T Consensus 297 iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg-----v~--~l--~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 297 IIQYAFKRFSVAEDGISGEHILSLILQVVLG-----VE--VL--RVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhcC-----cc--ee--eccccchhhhcccCcceeHHHHHHHHH
Confidence 4555666666666666666666555554310 11 00 113478889999999999999999876
No 92
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.52 E-value=0.065 Score=43.73 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=47.6
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhc----CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFD----MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRS 91 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~----~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~ 91 (130)
-+.-+|+.+|.+++|.|+..|++.+...... ++....+. +..+-+++..+-....++|+..+|..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~f---ed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPF---EDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccH---HHHHHHHHHHhCccCCCceeHHHHhh
Confidence 4778999999999999999999987765432 11111222 23445688888877788999999987
No 93
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.31 E-value=0.21 Score=43.00 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
...++..+|+..|++++|.++..+...++..+. .. -....+..+|++.+..+++++..++|+.+....
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n------~~--l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN------VQ--LSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHH------Hh--hhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 346789999999999999999999999998874 21 112345678899988899999999998876544
No 94
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.96 E-value=0.13 Score=40.56 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+...|..||.+++|.+++.|.-..+.-++ .++ .....++-.|+.++.+.||.+.-++|.-+++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc-----~p~--~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLC-----GPP--VTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeee-----CCC--CcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 4588999999999999999888776665554 122 12234566899999999999999998777664
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.79 E-value=0.18 Score=41.23 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMAR 102 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~ 102 (130)
++-+|+-+|.+++|.|+..|..-+.+..+..|-.
T Consensus 353 leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~ 386 (493)
T KOG2562|consen 353 LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMEC 386 (493)
T ss_pred hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999998888877666553
No 96
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.75 E-value=0.12 Score=39.22 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..++++...+|+|+|-.+|..||....-.... ...............+..=..+|.|.||.+|++|+..++-
T Consensus 236 fmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 236 FMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred HHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 34678888999999999999999864321100 0000000112223445566789999999999999877654
No 97
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.66 E-value=0.41 Score=34.35 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCC-----------------C---CCC--h------------------
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MED-----------------E---AQP--I------------------ 62 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~-----------------~---~~~--~------------------ 62 (130)
.+++--.-||.|+||.|.+-|--..++++|. .-. + ..| .
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 3556666799999999999997776666653 000 0 000 0
Q ss_pred ----HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 63 ----EEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 63 ----~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+-....+++||..+++.+.+.||+.|..++++.
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 001245788999999998999999999888774
No 98
>PF14658 EF-hand_9: EF-hand domain
Probab=93.19 E-value=0.14 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=36.0
Q ss_pred eeecchhHHHhhcCHHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHh
Q 032907 4 AVLNGSTVTKFVDDKAKFENCVDECFEKLDFVKN-GGLSRSTLRERFHR 51 (130)
Q Consensus 4 ~~~d~~~~~~~~~~~~~~~~~l~~~F~~~D~d~d-G~Is~~El~~~l~~ 51 (130)
+|.+=.++.+-+.-....+..+..+.+.+|+++. |.|++++|..+|+.
T Consensus 16 ~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 16 PVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred eHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3444445555555534456689999999999998 99999999998875
No 99
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=93.07 E-value=0.12 Score=38.07 Aligned_cols=28 Identities=39% Similarity=0.812 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 69 YNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 69 ~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+..+|+.+|.+.||+|++.|+..+|..+
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHh
Confidence 4679999999999999999999888754
No 100
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.95 E-value=0.34 Score=40.23 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=46.9
Q ss_pred HHHHHHHHh-hhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 21 FENCVDECF-EKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 21 ~~~~l~~~F-~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+...+.++. ...|.-+||-||++||+..=.-++ .| +..+..+|.-+|+.++|.+++++|...++.
T Consensus 71 ~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC------~p----Dal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 71 FNDKIVRLLASIADQTKDGLISFQEFRAFESVLC------AP----DALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred CChHHHHHHHhhhhhcccccccHHHHHHHHhhcc------Cc----hHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 333444433 456788999999999987544443 23 234567899999999999999999888764
No 101
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.31 E-value=0.6 Score=41.18 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCC-hHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 20 KFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQP-IEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 20 ~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~-~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
.....++..|..+|+...|.+++.++..++..+|. ... .++....+..+....|.+..|++++.+|...|..-+
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGY----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 34457999999999999999999999999999874 221 233445566778888888889999999999877543
No 102
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=92.20 E-value=0.11 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=28.1
Q ss_pred ecchhHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 032907 6 LNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRE 47 (130)
Q Consensus 6 ~d~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~ 47 (130)
++.+.+..+..-....+..++..|+..|.|+||.||..|+..
T Consensus 71 L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 71 LDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp E-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred cCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 444555555543334455688999999999999999999865
No 103
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.92 E-value=1.2 Score=28.60 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc----CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFD----MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~----~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
.++++-+|+.+ .|++|.++..-|..++...-. .+. ......++..++..|... ...-.|+.++|..+|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE-~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGE-GPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCc-cccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 45789999999 899999999988888776532 111 011112445567788886 3566899999999886
No 104
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.56 E-value=0.21 Score=40.21 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=25.2
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhh
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
...+|+.+|.|+||.|+.+||..++...
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5789999999999999999999988654
No 105
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.91 E-value=0.52 Score=39.75 Aligned_cols=67 Identities=19% Similarity=0.102 Sum_probs=53.9
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
...+..|..+|.|+.|.++..++..+++..+. .-+. ..+.++.++.|.+.+|++...||.+++..+.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~----~~d~----~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENV----GWDE----DRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC----CCCH----HHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 45778899999999999999999999988752 1222 2345688889999999999999999887653
No 106
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.33 E-value=0.56 Score=39.92 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEF 89 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF 89 (130)
..+.++|..+|.+++|.|++.++...+..+. . .++.+.+.-+|+.+|.+++ ..+.+|-
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~------~--~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILK------A--GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHH------h--hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4578899999999999999999999998874 2 2334556678999999998 8887775
No 107
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.11 E-value=0.6 Score=43.48 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 27 ECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 27 ~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
..|+.+|+||.|.|+..||..++.... ..+.+++ .-+..-...|.+..++|++|+.-..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-----~ytqse~----dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-----HYTQSEI----DFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-----cchhHHH----HHHHHhhccCccccccHHHHHHHhc
Confidence 368889999999999999999987652 1223333 3466677788888999999987543
No 108
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.81 E-value=2.4 Score=35.99 Aligned_cols=29 Identities=31% Similarity=0.756 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+..+|..+|.|+||.++-+||..+...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 35678999999999999999999887664
No 109
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=89.65 E-value=0.47 Score=39.46 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCCh------------------HHH--------HHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPI------------------EEI--------DRLYNNIFER 75 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~------------------~e~--------~~~~~~if~~ 75 (130)
.....+|..||+.++|.+|.+++..++..... -..+.... .+. .+...+.|++
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~ 187 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFRE 187 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999877643 00000000 010 1223567888
Q ss_pred hcCCCCCcccHHHHHHHHHHHHH
Q 032907 76 FDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 76 ~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
-|..++|.|+--+|...|-.+..
T Consensus 188 ~d~~~ng~is~Ldfq~imvt~~~ 210 (694)
T KOG0751|consen 188 KDKAKNGFISVLDFQDIMVTIRI 210 (694)
T ss_pred hcccCCCeeeeechHhhhhhhhh
Confidence 88889998888888777765543
No 110
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.45 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.0
Q ss_pred hcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 032907 15 VDDKAKFENCVDECFEKLDFVKNGGLSRSTLRER 48 (130)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~ 48 (130)
+.++.+.+..+..+.+--|.|+||+|++.||...
T Consensus 109 l~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 109 LSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4567778888899999999999999999998754
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=84.97 E-value=7.4 Score=27.16 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=47.2
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Q 032907 25 VDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMAR 102 (130)
Q Consensus 25 l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~ 102 (130)
+-..|..|-..+...++-.-|..+++.-+.++.. .+... +.-+|..+-..+...|+|++|..+|..+......
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k-~t~td----vDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK-LTSTD----VDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS-S-HHH----HHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC-CchHH----HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 3445555566666779999999999887542221 12222 3348888766666789999999999877655443
No 112
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=84.75 E-value=3.4 Score=38.95 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032907 21 FENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRS 91 (130)
Q Consensus 21 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~ 91 (130)
.+..+.+.....|++.+|+|+..|+.++|-.-. ...-...+.++..|+.+|. +.-+|+.++...
T Consensus 2294 ~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E------TeNI~s~~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2294 PEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE------TENILSSEEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred CChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc------cccccchHHHHHHHHHhhc-CCccccHHHHHh
Confidence 345688899999999999999999999886542 1100111245678999999 678888887733
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.66 E-value=6.2 Score=34.80 Aligned_cols=66 Identities=24% Similarity=0.271 Sum_probs=49.9
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAM 100 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~ 100 (130)
+....|..+ +-+.|+|+-..-+.++-..+ .++ .++.+|....|.|+||+++..||.-.|+-+...+
T Consensus 17 K~~~qF~~L-kp~~gfitg~qArnfflqS~-----LP~-----~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkL 82 (1118)
T KOG1029|consen 17 KHDAQFGQL-KPGQGFITGDQARNFFLQSG-----LPT-----PVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKL 82 (1118)
T ss_pred HHHHHHhcc-CCCCCccchHhhhhhHHhcC-----CCh-----HHHHHHHHhhhcCccccchHHHHHHHHHHHHHHh
Confidence 445556555 46779999999988887665 232 3456799999999999999999998888665443
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.32 E-value=8.4 Score=27.69 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=43.7
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCC--hHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQP--IEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~--~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
+++.++|+.+++.+.+.+|..|+..+++.-.. .+. .. .... .+..++. +-.+.+|.+..+..+.++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~--~GW~a~~~--EW~~~y~-L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDP--FGWFAAFF--EWGALYI-LAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCc--chhhhhhh--HHHHHHH-HHcCcCCcEeHHHHhhhc
Confidence 46899999999999999999999999876432 000 01 1111 1222333 346789999999876553
No 115
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.27 E-value=1.8 Score=37.05 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=61.8
Q ss_pred hhHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHH
Q 032907 9 STVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSE 88 (130)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~E 88 (130)
.+++++.-.....+.+++-+|..+|. ++|.++.+++..++.................+....++.+.|.+..|.+..+.
T Consensus 4 ~~~~~~~~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 82 (646)
T KOG0039|consen 4 ISFQELKITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNED 82 (646)
T ss_pred cchhhhcccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecc
Confidence 44555555556678899999999998 99999999999988765421110011223334456799999999999999888
Q ss_pred HHHHHHHH
Q 032907 89 FRSLMEEI 96 (130)
Q Consensus 89 F~~~l~~~ 96 (130)
+.-++...
T Consensus 83 ~~~ll~~~ 90 (646)
T KOG0039|consen 83 LEILLLQI 90 (646)
T ss_pred hhHHHHhc
Confidence 87776643
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.19 E-value=1 Score=35.58 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 032907 11 VTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHR 51 (130)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~ 51 (130)
|+.+|.......+-.+++|+-.|.|+|.+||..|++..|..
T Consensus 358 FK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 358 FKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred HHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 56777777777788899999999999999999999998754
No 117
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.88 E-value=2.3 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=12.8
Q ss_pred CCCCCCcccHHHHHHH
Q 032907 33 DFVKNGGLSRSTLRER 48 (130)
Q Consensus 33 D~d~dG~Is~~El~~~ 48 (130)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6799999999988754
No 118
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=81.61 E-value=0.64 Score=34.31 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=37.9
Q ss_pred HhhhcCC-CCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 28 CFEKLDF-VKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 28 ~F~~~D~-d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
-|-.+|. -.||++|..||..+-.- ..| ++.-....|...|.|+||+|+.+||...+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap-------~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAP-------LIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccCC-------ccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4566675 34788888877653211 222 22334568999999999999999997654
No 119
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.78 E-value=1.7 Score=36.32 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=41.1
Q ss_pred ecchhHHHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 6 LNGSTVTKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 6 ~d~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
.-|+.-++|..+..--...+..+|...|.|.||.++..||..++..+.
T Consensus 248 isGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 248 ISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 346777888888777778899999999999999999999999987654
No 120
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.74 E-value=15 Score=24.88 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=44.0
Q ss_pred HHHHHhhhcCCCC--CCcccHHHHHHHHHhhhc-C--CCCCCC--h-----HHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 032907 24 CVDECFEKLDFVK--NGGLSRSTLRERFHRFFD-M--EDEAQP--I-----EEIDRLYNNIFERFDEDRNGNIDRSEFRS 91 (130)
Q Consensus 24 ~l~~~F~~~D~d~--dG~Is~~El~~~l~~lg~-~--~~~~~~--~-----~e~~~~~~~if~~~D~d~dG~I~~~EF~~ 91 (130)
.+.++|+....+. |..|+..++..++..+.. . +.|... + ..++-.++.++..+|++++|.|+.-.|..
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 3567777665433 467999999999887752 1 111111 1 22333567899999999999999999877
Q ss_pred HHH
Q 032907 92 LME 94 (130)
Q Consensus 92 ~l~ 94 (130)
.+.
T Consensus 122 aL~ 124 (127)
T PF09068_consen 122 ALI 124 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.40 E-value=2.2 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERF 49 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l 49 (130)
..+...|+.+ .++.++||..||++.+
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3588999999 8888999999999864
No 122
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=78.22 E-value=2.8 Score=35.56 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=45.7
Q ss_pred hcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 032907 15 VDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 15 ~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
++....--+.+..+|..+|.|+||.++..|+..++.......+...+..+. --.+..|.++++-|....
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----------t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----------TVKNERGWLTLNGFLSQW 375 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----------ceecccceeehhhHHHHH
Confidence 344455567899999999999999999999999998775311111111111 011256888888877643
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.96 E-value=2.6 Score=33.61 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
-.+|+.+|+.+=.+.++.....-+..+-..+. ....|. -..-+-.||..+|.|.||.|+..|+..+..
T Consensus 210 g~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d---~s~~p~--CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 210 GNRLRDWFKALHEDSSQNDKTSSLHSAASGFD---TSILPI--CKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred HHHHHHHHHHHHhhhhccCcchhhcccccccc---cccCcc--hhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 35799999998777777766665554432221 111221 112235699999999999999999877543
No 124
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.20 E-value=1.2 Score=39.33 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=53.6
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMAR 102 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~ 102 (130)
..+.++|...|.+.+|.|+..+....+...|. +. ..+..+....|+.+.|.|++.+|.-.+..+...-..
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl------~~----~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~ 352 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFGL------SK----PRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAE 352 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCCC------Ch----hhhhhhhhhcchhccCcccccccchhhhhhhhhhhc
Confidence 45777999999999999999999988766542 21 223457889999999999999998877655544333
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=73.39 E-value=9.3 Score=32.65 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=37.1
Q ss_pred CCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 36 KNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 36 ~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+.|.+++++++.+.+.+.... ..+..+ +..+|..+-.+ ++.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~--~~~r~e----i~~lf~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITE--AEPPDD----VKDVFCKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhcccc--CCChHH----HHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 468999999998877763100 012233 34588888654 4689999999998753
No 126
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=70.20 E-value=8.7 Score=26.53 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=27.9
Q ss_pred CCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcC-------CCCCcccHHHHHHHHHHHHH
Q 032907 37 NGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDE-------DRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 37 dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~-------d~dG~I~~~EF~~~l~~~~~ 98 (130)
=+.||+.||.+.-+-.. .....+..+.+++.. +..+.|+|+.|..+|..+++
T Consensus 5 ~~~lsp~eF~qLq~y~e----------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE----------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHH----------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHH----------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 36789999887544331 111233445555532 23568999999999986653
No 127
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.35 E-value=17 Score=23.26 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH---HHHhccCCCc
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLMEEIML---AMARGIGDSL 108 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~---~~~~~~~~~~ 108 (130)
+.++.+|..+ .|.+|.++..-|..++++++. .++++..++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~ 46 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY 46 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC
Confidence 4567789888 788999999999999887653 3444444444
No 128
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=69.34 E-value=29 Score=22.69 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCC---CCCcccHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDED---RNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d---~dG~I~~~EF~~~l~~~~ 97 (130)
..+..-|..+-. ||.|..++|..++..- +..+...++|..+-.- ....|+.+|+..+..++.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-----------dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGMK-----------DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-------------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCCc-----------ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 347778888755 9999999999987432 1112223344433311 257899999888876653
No 129
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.13 E-value=19 Score=21.87 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 38 GGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 38 G~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
=.+++..|-.++... .|+... .. +...++.=..++|+.+||++.++.+..
T Consensus 7 p~~~F~~L~~~l~~~-------l~~~~~-~~---l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKH-------LPPSKM-DL---LQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHHH-------CCHHHH-HH---HHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356677777776654 222222 22 333444445789999999999998754
No 130
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=68.09 E-value=11 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..+|..+-. +.+.||.++|..+++.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~ 27 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLRE 27 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHH
Confidence 458888855 6788899998888864
No 131
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=66.53 E-value=17 Score=31.24 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 68 LYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 68 ~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
....+|...|.+++|.|+|.+|+..+..+.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 457899999999999999999999887554
No 132
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=60.11 E-value=7.1 Score=33.82 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=50.0
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCC---------------------
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRN--------------------- 81 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~d--------------------- 81 (130)
.-.++|..+|.+-++++++.++......++. .-.......+.......+|..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 3566788899999999999988877776653 000000000000112458888999998
Q ss_pred --CcccHHHHHHHHHHHHH
Q 032907 82 --GNIDRSEFRSLMEEIML 98 (130)
Q Consensus 82 --G~I~~~EF~~~l~~~~~ 98 (130)
|.++.+|.+.+++....
T Consensus 518 s~~~vtVDe~v~ll~~~i~ 536 (975)
T KOG2419|consen 518 SFGVVTVDELVALLALDII 536 (975)
T ss_pred ccCeeEHHHHHHHHHHHHH
Confidence 99999999998884443
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=56.53 E-value=14 Score=25.01 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=22.4
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhh
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
--+..++..||++++|.|+.-.++.++..+
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 457788899999999999999999887654
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=54.57 E-value=55 Score=27.90 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCC----CCCcccHHHHHHHHHH
Q 032907 20 KFENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDED----RNGNIDRSEFRSLMEE 95 (130)
Q Consensus 20 ~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d----~dG~I~~~EF~~~l~~ 95 (130)
+-...+..+|..+-. ++.++.++|..+|..... .... ....+..+|..+... ..|.++.+.|..++..
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~----~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQG----ERHA--GLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcC----CccC--CHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 344578889988743 368999999999977631 1111 012345577776543 3468999999998853
No 135
>PLN02952 phosphoinositide phospholipase C
Probab=53.50 E-value=98 Score=26.63 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=42.7
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhc---CCCCCcccHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFD---EDRNGNIDRSEFRSLME 94 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D---~d~dG~I~~~EF~~~l~ 94 (130)
...+..+|..+-. +.+.++.++|..+|..... ....+.......+..++.... ..+.+.++++.|..++.
T Consensus 37 r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~--e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 37 PDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD--ELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred hHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC--CcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 3578999998844 4478999999999987631 001112333333333333322 12335689999999885
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=52.18 E-value=53 Score=28.10 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDE-DRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~-d~dG~I~~~EF~~~l~~ 95 (130)
..+..+|..+-. ++.++.++|..+|..... .+. ...+.+..+|+.+.. -..+.++++.|..+|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~-----~~~-~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQK-----QDK-ATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcC-----Ccc-CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 468899988843 479999999999987631 110 001223446665432 23567999999999853
No 137
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.13 E-value=11 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=28.8
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
...+++.|+.+|..++|+|+.+-++.++..+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 56799999999999999999999999888774
No 138
>PLN02223 phosphoinositide phospholipase C
Probab=51.02 E-value=1e+02 Score=26.16 Aligned_cols=72 Identities=6% Similarity=0.037 Sum_probs=45.3
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhc----CCCCCcccHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFD----EDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D----~d~dG~I~~~EF~~~l~~ 95 (130)
..++.+|..+ ..++|..+...+.+++.-+.. -+....+.++.+..+..++...- ..+.+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 5688999988 477899999999998843321 01111223445555555554331 112366999999998753
No 139
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=50.60 E-value=24 Score=17.95 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 032907 80 RNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 80 ~dG~I~~~EF~~~l~~~~~ 98 (130)
+.|+|+++|++.+...+..
T Consensus 1 ~~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRVNN 19 (33)
T ss_pred CCceecHHHHHHHHHHHHH
Confidence 3689999999999887654
No 140
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=50.49 E-value=11 Score=28.04 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERF 49 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l 49 (130)
......|...|.|+||+|+.+|+...+
T Consensus 222 ~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 222 HCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhchhhhhcccCCCCCceeHHHhhccc
Confidence 457789999999999999999998765
No 141
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=43.56 E-value=33 Score=25.13 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHHHHHH
Q 032907 71 NIFERFDEDRNGNIDRSEFRSLMEEIMLAMA 101 (130)
Q Consensus 71 ~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~ 101 (130)
.++..+|.|+||.++-+|...+...++..+.
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~~~~l~ 84 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEIFDNLK 84 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHHHhhhh
Confidence 3677899999999999999998887776655
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=43.13 E-value=1.1e+02 Score=26.34 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHh---cCCCCCcccHHHHHHHHHH
Q 032907 22 ENCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERF---DEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 22 ~~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~---D~d~dG~I~~~EF~~~l~~ 95 (130)
...+..+|..+- .+++.++.++|..+|..... +....+.......+..++... ..-+.+.++.+.|..++..
T Consensus 28 ~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~Q~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYA-DGDAHMSPEQLQKLMAEEGG-GEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHh-CCCCccCHHHHHHHHHHhCC-CcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 457999999994 44489999999999987631 000011222333333332221 1223456999999998753
No 143
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=43.08 E-value=55 Score=17.80 Aligned_cols=26 Identities=15% Similarity=0.615 Sum_probs=18.5
Q ss_pred HHHHHHhc-CCC-CCcccHHHHHHHHHH
Q 032907 70 NNIFERFD-EDR-NGNIDRSEFRSLMEE 95 (130)
Q Consensus 70 ~~if~~~D-~d~-dG~I~~~EF~~~l~~ 95 (130)
-.+|..+- ++| ..+++..||..++..
T Consensus 9 I~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 9 IDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34666665 333 468999999999875
No 144
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.07 E-value=15 Score=32.77 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~ 97 (130)
..+...|+.+|..++|.|+-.+-..++..-+ .+. .++-+++...|..+.|+++..+|...++.+.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~------L~~----qvl~qiws~~d~~~~g~l~~q~f~~~lrlva 75 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG------LPD----QVLGQIWSLADSSGKGFLNRQGFYAALRLVA 75 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc------cch----hhhhccccccccccCCccccccccccchHhh
Confidence 3577899999999999999999888877654 121 2234577889999999999999999888653
No 145
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=41.19 E-value=1.3e+02 Score=22.02 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHhhhcCCC--CCCcccHHHHHHHHHhhhcCCCC--------------CCChHHHHHHHHHHHHHhcCCCCCcccHHH
Q 032907 25 VDECFEKLDFV--KNGGLSRSTLRERFHRFFDMEDE--------------AQPIEEIDRLYNNIFERFDEDRNGNIDRSE 88 (130)
Q Consensus 25 l~~~F~~~D~d--~dG~Is~~El~~~l~~lg~~~~~--------------~~~~~e~~~~~~~if~~~D~d~dG~I~~~E 88 (130)
+.++|..+.+. +...||++|+.++++.+..++.| ..|..+.......+...+.....|.+|..+
T Consensus 116 L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g~~l~~~~sg~~vv~s~~~~e~~~~~~~il~~~~~~~~g~vt~~~ 195 (223)
T PF04157_consen 116 LSDLYCRYNRARGGSELISPEDILRACKLLEVLGLGFRLRKFGSGVKVVQSVPYSELSKDQSRILELAEEENGGGVTASE 195 (223)
T ss_dssp HHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSSEEEEEETTTEEEEECST-CHH-HHHHHHHHHH--TTTSEEEHHH
T ss_pred HHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCchhhhHHHHHHHHHHHhhcCCCCCHHH
Confidence 44455555443 45579999999998887554331 112122223345566666355568999888
Q ss_pred HHHHH
Q 032907 89 FRSLM 93 (130)
Q Consensus 89 F~~~l 93 (130)
+..-+
T Consensus 196 l~~~~ 200 (223)
T PF04157_consen 196 LAEKL 200 (223)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77643
No 146
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=38.48 E-value=11 Score=23.96 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 37 NGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 37 dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
||.++..|...+-..+.. ++ .+..+.. .++..+........++.+|.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~---l~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFG---LDAEEAA----ELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhC---cCHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 788999887765544321 11 1222222 2333333333444667777766554
No 147
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=72 Score=21.76 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=32.3
Q ss_pred CCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcc
Q 032907 35 VKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNI 84 (130)
Q Consensus 35 d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I 84 (130)
+..|.||..|-+.+|.--- ....++++..++.+|+.-|+...|..
T Consensus 51 ~~~~~iTlqEa~qILnV~~-----~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNVKE-----PLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccccHHHHhhHhCCCC-----CCCHHHHHHHHHHHHhccCcccCcce
Confidence 3357899999888774321 11257788888999999999977754
No 148
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=36.06 E-value=32 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Q 032907 71 NIFERFDEDRNGNIDRSEFRSLMEEIMLAMAR 102 (130)
Q Consensus 71 ~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~ 102 (130)
.+|...|.|+||+++-.|+.+++..-+++++.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYd 279 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYD 279 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999998877777764
No 149
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=35.95 E-value=68 Score=22.21 Aligned_cols=43 Identities=5% Similarity=0.201 Sum_probs=30.2
Q ss_pred hHHHhhcCHHHHHHHHHHHhhh--cCCCCCCcc----cHHHHHHHHHhh
Q 032907 10 TVTKFVDDKAKFENCVDECFEK--LDFVKNGGL----SRSTLRERFHRF 52 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~~F~~--~D~d~dG~I----s~~El~~~l~~l 52 (130)
.++.++++.......+.++|.. ++.+..|.- +++++..++..+
T Consensus 7 efk~lIe~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i 55 (141)
T PF12588_consen 7 EFKDLIESDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHI 55 (141)
T ss_pred HHHHHHhcCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHH
Confidence 5788899998888888889988 555666654 345555555444
No 150
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=34.12 E-value=54 Score=22.78 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=33.5
Q ss_pred eeeecchhHHHhhcCHHHHH-----HHHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 3 IAVLNGSTVTKFVDDKAKFE-----NCVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 3 ~~~~d~~~~~~~~~~~~~~~-----~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
..-++++++.+++.+-.-.. ..+.-+|..+=..+...|++++|..+|..+.
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34466777777766543322 4577788887666667799999999888775
No 151
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.53 E-value=71 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHH
Q 032907 68 LYNNIFERFDEDRNGNIDRSEFRS 91 (130)
Q Consensus 68 ~~~~if~~~D~d~dG~I~~~EF~~ 91 (130)
++-++++..|.|+||.++-+||.-
T Consensus 478 vlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHHHH
Confidence 456789999999999999999954
No 152
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=33.31 E-value=9.8 Score=19.29 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=13.9
Q ss_pred HHHHHhcCCCCCcccHHH
Q 032907 71 NIFERFDEDRNGNIDRSE 88 (130)
Q Consensus 71 ~if~~~D~d~dG~I~~~E 88 (130)
.+.+.-|+|+|-+|+.++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 466778999999988654
No 153
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=31.69 E-value=47 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=19.9
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhh
Q 032907 29 FEKLDFVKNGGLSRSTLRERFHRF 52 (130)
Q Consensus 29 F~~~D~d~dG~Is~~El~~~l~~l 52 (130)
..-+|.|+||.++.+|+..+.+..
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 346899999999999999877654
No 154
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=31.03 E-value=1.5e+02 Score=20.74 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHH
Q 032907 36 KNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERFDEDRN-GNIDRSEFRSLM 93 (130)
Q Consensus 36 ~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~D~d~d-G~I~~~EF~~~l 93 (130)
-||.++.+|.+.++..+.. ..+......++....+.+...+|.|.. |++.-.+...-+
T Consensus 37 adg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~l 96 (144)
T COG3793 37 ADGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDL 96 (144)
T ss_pred cccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence 4788999999988877643 111111122333444455556666655 555555544443
No 155
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=30.97 E-value=2.4e+02 Score=25.05 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=44.5
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 23 NCVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 23 ~~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
.+++..|+..|.-++|++...++......+.. .| ++ ..+|..+-.+ .+.++.+++..++...
T Consensus 172 ~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~-----rp--ev----~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 172 SKARRLFKESDNSQTGKLEEEEFVKFRKELTK-----RP--EV----YFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHHHHHHHHHhhccceehHHHHHHHHHhhcc-----Cc--hH----HHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 46788899889999999999999998887752 33 32 2356555544 6777777777766643
No 156
>COG5562 Phage envelope protein [General function prediction only]
Probab=30.26 E-value=39 Score=23.30 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH
Q 032907 72 IFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 72 if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+-..+..+..|+.||+||+..+..
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHh
Confidence 555677788999999999988764
No 157
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=29.13 E-value=1.2e+02 Score=19.32 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=31.2
Q ss_pred HHHHhcCCCCCcccHHHHHHH--HHHH---------------HHHHHhccCCCceEEeeccCcHH
Q 032907 72 IFERFDEDRNGNIDRSEFRSL--MEEI---------------MLAMARGIGDSLVLVALDQDSLL 119 (130)
Q Consensus 72 if~~~D~d~dG~I~~~EF~~~--l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~ 119 (130)
+...+..+.+|.|..+-+..+ |+.+ ...+...+..++++.+.++|..+
T Consensus 24 L~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levseD~~~V 88 (90)
T cd08030 24 LLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVSEDGKRV 88 (90)
T ss_pred HHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEcCCCCcc
Confidence 455566778899886665543 2232 34567777888887777777544
No 158
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=29.04 E-value=51 Score=19.76 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHHHHh
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFD-MEDEAQPIEEIDRLYNNIFERF 76 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~-~~~~~~~~~e~~~~~~~if~~~ 76 (130)
.+..+...++...+--+-..+++.++..++. .|. ...++++..+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~-----~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGE-----VVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTS-----S--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHHHhh
Confidence 4555555555444444666788888888865 222 22335667777654
No 159
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=28.77 E-value=45 Score=25.95 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=29.6
Q ss_pred CcccHHHHHHHHHHHHHHHHhccCCCceEEeeccCcHHHHHhhhhhcc
Q 032907 82 GNIDRSEFRSLMEEIMLAMARGIGDSLVLVALDQDSLLNKAVQHESAT 129 (130)
Q Consensus 82 G~I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
..+|-+|++.++..+.. .+| .++++|+-.=.+|.+|...|
T Consensus 131 ~~~s~delid~y~~li~-------~YP-IvsIEDpf~edD~e~w~~lt 170 (295)
T PF00113_consen 131 RYKSSDELIDYYKDLIK-------KYP-IVSIEDPFDEDDWEGWAKLT 170 (295)
T ss_dssp GEEEHHHHHHHHHHHHH-------HS--EEEEESSS-TT-HHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH-------hcC-eEEEEccccccchHHHHHHH
Confidence 36899999999988766 788 47889988888888887554
No 160
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.46 E-value=84 Score=15.63 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.9
Q ss_pred CCcccHHHHHHHHHHH
Q 032907 81 NGNIDRSEFRSLMEEI 96 (130)
Q Consensus 81 dG~I~~~EF~~~l~~~ 96 (130)
.|.||-+||.+.-..+
T Consensus 14 ~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 14 KGEISEEEYEQKKARL 29 (31)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6899999998876554
No 161
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=27.38 E-value=56 Score=21.97 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLME 94 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~ 94 (130)
+.++.+..++-.|..|.|.|.||..-+.
T Consensus 7 eQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 7 EQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred HHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 4566788999999999999999987554
No 162
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=26.82 E-value=2e+02 Score=23.23 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIML 98 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~ 98 (130)
.+..+...+|..+.|+++.--.+.++..++. + .+...++-||.... |.+|-+.+-.|..++.+++.
T Consensus 111 llaflLaA~ds~~~g~~~vfavkialatlc~------g--k~~dklryIfs~is-ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 111 LLAFLLAAEDSEGQGKQQVFAVKIALATLCG------G--KIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHHHHHhhcCccCCCCceeecchhhhhhhcc------c--hHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc
Confidence 4555667889999999998888887776641 1 22234455776654 55788887777777776653
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=26.53 E-value=1.9e+02 Score=19.11 Aligned_cols=66 Identities=5% Similarity=0.026 Sum_probs=40.0
Q ss_pred hhcCCCCCCcccHHHHHHHHHhhhcCCC-CCC-ChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 30 EKLDFVKNGGLSRSTLRERFHRFFDMED-EAQ-PIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 30 ~~~D~d~dG~Is~~El~~~l~~lg~~~~-~~~-~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
+.||+..+-+||.++++.++..-..+.. +.. ..+-....+-+++-+....+...++.+=+..+++-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~ 77 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRF 77 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 3689999999999999998865321100 111 12222345556666666667677776655555543
No 164
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=26.36 E-value=1e+02 Score=18.40 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred ecchhHHHhhcCHHHHHHHHHHHhhhc
Q 032907 6 LNGSTVTKFVDDKAKFENCVDECFEKL 32 (130)
Q Consensus 6 ~d~~~~~~~~~~~~~~~~~l~~~F~~~ 32 (130)
.|.+.+..++++...+..++.++...+
T Consensus 35 md~~ell~lle~~~~L~~kv~EA~~vl 61 (64)
T smart00517 35 MDNSELLHLLESPELLRSKVDEALEVL 61 (64)
T ss_pred CCHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 477899999999999999999888765
No 165
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.82 E-value=57 Score=19.53 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=19.4
Q ss_pred hhcCCCCCCcccHHHHHHHHHh
Q 032907 30 EKLDFVKNGGLSRSTLRERFHR 51 (130)
Q Consensus 30 ~~~D~d~dG~Is~~El~~~l~~ 51 (130)
+.||+..+.+|+.+++..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3689999999999999998865
No 166
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=25.56 E-value=63 Score=22.94 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHhhhc
Q 032907 26 DECFEKLDFVKNGGLSRSTLRERFHRFFD 54 (130)
Q Consensus 26 ~~~F~~~D~d~dG~Is~~El~~~l~~lg~ 54 (130)
.-.|..+-.-.-+.|++++++.+|..++.
T Consensus 60 ~i~fsKvkg~~~~~~tf~~fkkal~ela~ 88 (180)
T KOG4070|consen 60 DIVFSKVKGKKARTITFEEFKKALEELAT 88 (180)
T ss_pred ceeeeeccccccccccHHHHHHHHHHHHH
Confidence 34565555555667889999988888763
No 167
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=24.33 E-value=1.8e+02 Score=21.83 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=30.6
Q ss_pred ceeeecchhH-HHhhcCHHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 032907 2 SIAVLNGSTV-TKFVDDKAKFENCVDECFEKLDFVKNGGLSRSTLRERF 49 (130)
Q Consensus 2 ~~~~~d~~~~-~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l 49 (130)
++.|.|+-.+ +++++.....-..+.+.|-..=.+.||.|++..|...+
T Consensus 26 G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~V 74 (244)
T PTZ00451 26 HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKII 74 (244)
T ss_pred CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHH
Confidence 4567777776 44445444444567777743323457999999888755
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.05 E-value=74 Score=26.44 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Q 032907 67 RLYNNIFERFDEDRNGNIDRSEFRSLMEEI 96 (130)
Q Consensus 67 ~~~~~if~~~D~d~dG~I~~~EF~~~l~~~ 96 (130)
+.++.|-+.+|-|.+|.|+.+|=-.+++.-
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 456789999999999999998877777753
No 169
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=83 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 032907 20 KFENCVDECFEKLDFVKNGGLSRSTLRERFHR 51 (130)
Q Consensus 20 ~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~ 51 (130)
..+..+.++++..|.|.||.++.+||.-+-..
T Consensus 474 lpnsvlgkiwklad~d~dg~ld~eefala~hl 505 (532)
T KOG1954|consen 474 LPNSVLGKIWKLADIDKDGMLDDEEFALANHL 505 (532)
T ss_pred CchhHHHhhhhhhcCCcccCcCHHHHHHHHHH
Confidence 34457899999999999999999999765433
No 170
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.77 E-value=2e+02 Score=18.07 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=35.8
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 29 FEKLDFVKNGGLSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 29 F~~~D~d~dG~Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
|...|... ...+..++..++...+ .+..++-..-...++..+.+....++.+|+.++|.+
T Consensus 26 ~~~idi~~-~~~~~~~l~~~~~~~~------~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~ 85 (105)
T cd02977 26 YEFIDYLK-EPPTKEELKELLAKLG------LGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAE 85 (105)
T ss_pred cEEEeecc-CCCCHHHHHHHHHhcC------CCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHh
Confidence 44555554 3468899999888774 121111110013566665554467899999888875
No 171
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.98 E-value=2.9e+02 Score=22.11 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhccCCCce
Q 032907 40 LSRSTLRERFHRFFDMEDEAQPIEEIDRLYNNIFERFDEDRNGNIDRSEFRSLMEEIMLAMARGIGDSLV 109 (130)
Q Consensus 40 Is~~El~~~l~~lg~~~~~~~~~~e~~~~~~~if~~~D~d~dG~I~~~EF~~~l~~~~~~~~~~~~~~~~ 109 (130)
++.+|+..++..+| .|.-....+++.+++. |..+|+++..+-..+-+.+.......+.
T Consensus 23 ~~~~el~~~~~~~g------~~~~r~~qi~~w~y~~------~~~~~~~m~~l~~~~r~~l~~~~~~~~~ 80 (368)
T PRK14456 23 LRRQELTELLARLG------EPAWRAAQLHQWLFSH------RALSFEEMTTLSKPLRRKLAESFAIQPP 80 (368)
T ss_pred CCHHHHHHHHHHcC------CCchHHHHHHHHHHHc------CCCCHHHhccccHHHHHHHhcceecCCc
Confidence 78899999998886 2322333444455553 4678999888777776666665444433
No 172
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.53 E-value=1e+02 Score=18.26 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.5
Q ss_pred CCcccHHHHHHHHHHHH
Q 032907 81 NGNIDRSEFRSLMEEIM 97 (130)
Q Consensus 81 dG~I~~~EF~~~l~~~~ 97 (130)
+|.|+++.|.+-++.+.
T Consensus 37 ~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp TTSS-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68899999999988764
No 173
>COG5568 Uncharacterized small protein [Function unknown]
Probab=21.41 E-value=77 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.9
Q ss_pred CCCceEEeeccCcHHHHHhhhhhcc
Q 032907 105 GDSLVLVALDQDSLLNKAVQHESAT 129 (130)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
.+.||+++=...+.+.+++.|+++|
T Consensus 57 dG~pilLsD~R~ta~~~A~e~dL~t 81 (85)
T COG5568 57 DGEPILLSDNRDTALAGAAEHDLRT 81 (85)
T ss_pred CCceEEEecchhHHHHHHhhcccee
Confidence 3558888777899999999999876
No 174
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=21.32 E-value=1.4e+02 Score=20.84 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhhh
Q 032907 24 CVDECFEKLDFVKNGGLSRSTLRERFHRFF 53 (130)
Q Consensus 24 ~l~~~F~~~D~d~dG~Is~~El~~~l~~lg 53 (130)
.+..-...+|.++-+++|.+|++.++-.+-
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~ 99 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQIQ 99 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHHH
Confidence 345555677888888999999999886654
No 175
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=20.91 E-value=71 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH
Q 032907 71 NIFERFDEDRNGNIDRSEFRSLMEE 95 (130)
Q Consensus 71 ~if~~~D~d~dG~I~~~EF~~~l~~ 95 (130)
..|+++|.|+.|-|+..+|.+.|..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~ 4085 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG 4085 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc
Confidence 3589999999999999999998863
No 176
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.63 E-value=2e+02 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 032907 70 NNIFERFDEDRNGNIDRSEFRSLM 93 (130)
Q Consensus 70 ~~if~~~D~d~dG~I~~~EF~~~l 93 (130)
..+++.+. +|.||.+|-.+.+
T Consensus 92 ~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 92 KEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred HHHHHHHH---cCCCCHHHHHHHh
Confidence 34666665 6788888866554
No 177
>COG3285 Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
Probab=20.50 E-value=2e+02 Score=22.53 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCCceEEeecc
Q 032907 84 IDRSEFRSLMEEIMLAMARGIGDSLVLVALDQ 115 (130)
Q Consensus 84 I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (130)
+|++++..++..+...|-..+.+-|+.++++.
T Consensus 24 ~TK~dla~Yya~Va~~ml~~l~~RP~slvR~P 55 (299)
T COG3285 24 ITKEDLARYYAAVADRMLPFLAGRPVSLVRCP 55 (299)
T ss_pred cCHHHHHHHHHHHHHHHhHHhcCCceeEEECC
Confidence 99999999999999999999999999999976
Done!