BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032908
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1
Length = 129
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 74/102 (72%), Gaps = 8/102 (7%)
Query: 37 DESRLELMSDALEWPML-SMSFDEEEGEG-------PEGEGGRRSLFWQRMKYYISYGAL 88
D L L+ D +WP+ S FD +GE +G RRSL+W+R KYYISYGAL
Sbjct: 28 DNPSLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGAL 87
Query: 89 SANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
SANR+PCPPRSGRSYYT NC++ARGPVHPY+RGCS ITRCRR
Sbjct: 88 SANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129
>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
Length = 116
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 54 SMSFDEEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARG 113
S+S EEE E + E RR L + YISYGAL N +PC R G SYY NC +
Sbjct: 48 SLSTAEEEFE-MDSEINRRILATTK---YISYGALRRNTVPCS-RRGASYY--NCRRG-A 99
Query: 114 PVHPYTRGCSVITRCRR 130
+PY+RGCS ITRCRR
Sbjct: 100 QANPYSRGCSAITRCRR 116
>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1
Length = 110
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 60 EEGEGP---EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVH 116
E+GE + E RR L +R YISYGAL N +PC R GRSYY +C K R +
Sbjct: 40 EDGELDYLMDSETNRRQLAARRS--YISYGALRKNNVPCSRR-GRSYY--DC-KKRKRAN 93
Query: 117 PYTRGCSVITRCRR 130
PY RGCSVIT C R
Sbjct: 94 PYRRGCSVITHCYR 107
>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23
PE=1 SV=1
Length = 138
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 66 EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
+ E RR L +R YISYGAL N IPC R G SYY NC + +PY+RGCS I
Sbjct: 80 DSEINRRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQANPYSRGCSAI 132
Query: 126 TRCRR 130
TRCRR
Sbjct: 133 TRCRR 137
>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1
Length = 119
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
K YISYGA+ N +PC R G SYY NC + +PY+RGCS ITRCRR
Sbjct: 73 KKYISYGAMRRNSVPCSRR-GASYY--NCQRG-AQANPYSRGCSTITRCRR 119
>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1
Length = 115
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 66 EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
+ E RR L K YISYGAL N +PC R G SYY NC K +PY+RGCS I
Sbjct: 58 DSESNRRIL---ATKKYISYGALQKNSVPCS-RRGASYY--NC-KPGAQANPYSRGCSAI 110
Query: 126 TRCR 129
TRCR
Sbjct: 111 TRCR 114
>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1
Length = 110
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 8 VKLLKFGFGLMLMHMI--SMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDEEEGEGP 65
VK+L FGL+++ M+ S+N + + ++ D LE M
Sbjct: 3 VKMLLI-FGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLM------------- 48
Query: 66 EGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVI 125
+ E RR L R + YI Y AL N +PC R GRSYY +C K R +PY RGCS I
Sbjct: 49 DSETNRRQL--ARGRRYIGYDALKKNNVPCS-RRGRSYY--DC-KKRRRNNPYRRGCSAI 102
Query: 126 TRCRR 130
T C R
Sbjct: 103 THCYR 107
>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1
Length = 120
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 61 EGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTR 120
E E + E RR L + YISY +L N +PC R G SYY NC +PY+R
Sbjct: 58 EEEEMDSEINRRILATTK---YISYQSLKRNSVPCS-RRGASYY--NCQNG-AQANPYSR 110
Query: 121 GCSVITRCR 129
GCS I RCR
Sbjct: 111 GCSKIARCR 119
>sp|A8MQI8|RLF5_ARATH Protein RALF-like 5 OS=Arabidopsis thaliana GN=RALFL5 PE=2 SV=1
Length = 89
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
K YI Y + PC PR + TP+CYK R P +PY RGC+ I+RCRR
Sbjct: 26 KRYIEYPPWQKH--PCNPR----FPTPDCYK-RTPANPYRRGCTCISRCRR 69
>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
Length = 118
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 67 GEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVIT 126
E RR + + K YISY L + +PC + G SYY C G + Y RGCSVIT
Sbjct: 55 SEISRRVMMMR--KQYISYETLRRDMVPCQ-KPGASYYA--CRS--GQANAYNRGCSVIT 107
Query: 127 RCRR 130
RC R
Sbjct: 108 RCAR 111
>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1
Length = 113
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 59 EEEGEGPEGEGGRRSLFWQRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPY 118
E+E P E RR L Q K YI Y L + +PC + G SYY +C G + Y
Sbjct: 43 EDEDLMPT-EISRRVLMAQ--KRYIGYETLRRDMVPCQ-KPGASYY--DCRS--GQANSY 94
Query: 119 TRGCSVITRCRR 130
+RGC ITRC R
Sbjct: 95 SRGCDTITRCAR 106
>sp|Q0V822|RLF26_ARATH Protein RALF-like 26 OS=Arabidopsis thaliana GN=RALFL26 PE=3 SV=1
Length = 76
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
+ Y++ G L R P PP + + +K R PVH Y+RGCS ITRCRR
Sbjct: 26 RKYLNPGVLDRCRGPNPPAGCHPHNSH--HKPRVPVHNYSRGCSRITRCRR 74
>sp|Q9LSG0|RLF25_ARATH Protein RALF-like 25 OS=Arabidopsis thaliana GN=RALFL25 PE=3 SV=1
Length = 74
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 109 YKARGPVHPYTRGCSVITRCRR 130
YK R PV+ Y+RGC+ I RCRR
Sbjct: 49 YKPRTPVNVYSRGCTTINRCRR 70
>sp|A8MRM1|RLF16_ARATH Protein RALF-like 16 OS=Arabidopsis thaliana GN=RALFL16 PE=3 SV=1
Length = 95
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 83 ISYGALSANRIPCPPRSGRSYYTPN-CYKARGPVHPYTRGCSVITRCRR 130
+ YG++ +RIP Y PN C K PV+ Y RGC ITRC R
Sbjct: 32 LGYGSIKGDRIP-----ACGYKNPNSCVKQ--PVNHYHRGCEKITRCAR 73
>sp|A8MRF9|RLF21_ARATH Protein RALF-like 21 OS=Arabidopsis thaliana GN=RALFL21 PE=2 SV=1
Length = 105
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 104 YTPNCYKARGPVHPYTRGCSVITRCRR 130
Y C + PV+PY RGCS I RCRR
Sbjct: 49 YPSACAPSEQPVNPYRRGCSKIHRCRR 75
>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
Length = 117
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 77 QRMKYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
+ + +SYGAL N+ C Y+ C P +PY+RGCS RC R
Sbjct: 64 EEQAHKLSYGALRRNQPACDGGKRGESYSTQCLPP--PSNPYSRGCSKHYRCGR 115
>sp|A8MQM2|RLF6_ARATH Protein RALF-like 6 OS=Arabidopsis thaliana GN=RALFL6 PE=3 SV=1
Length = 81
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 82 YISYGALSANRIPCPPRSGRSYYTPN-CYKARGPVHPYTRGCSVITRCRR 130
YI+Y + + IP G S P C K P + Y RGC + TRC+R
Sbjct: 32 YINYNGMKGDIIP-----GCSSKNPKECVKI--PAYSYNRGCEISTRCQR 74
>sp|Q3IJ28|SYGB_PSEHT Glycine--tRNA ligase beta subunit OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=glyS PE=3 SV=1
Length = 689
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 30 VEAQVAVDESRLELMSDALEWPM-LSMSFDEE 60
+ A VA+DE LE ++ +EWP+ L+ +F+EE
Sbjct: 236 INAVVAMDEDLLEEVTSLVEWPVTLTATFEEE 267
>sp|O60287|NPA1P_HUMAN Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens
GN=URB1 PE=1 SV=4
Length = 2271
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 3 LAPATVKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPMLSMSFDEEEG 62
+ P V F F +L +IS L E + L++ ALE P + + +
Sbjct: 568 VVPHVVMQYNFDFSKLLKGVISEQGLREEVPPILQHHMLKV---ALELPASKFLWLKAQ- 623
Query: 63 EGPEGE--GGRRSLFWQRMKYYISYGAL 88
EGP+ E GG RS+F+ MK +++ L
Sbjct: 624 EGPDAEIIGGERSVFYLLMKMFVTSSHL 651
>sp|A8MQP2|RLF29_ARATH Protein RALF-like 29 OS=Arabidopsis thaliana GN=RALFL29 PE=3 SV=1
Length = 90
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 95 CPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
C PR + T CYK R P +PY R C+ RCRR
Sbjct: 41 CDPR----FPTAACYK-RTPANPYRRPCTTANRCRR 71
>sp|F4ISE2|RLF13_ARATH Protein RALF-like 13 OS=Arabidopsis thaliana GN=RALFL13 PE=3 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 113 GPVHPYTRGCSVITRCRR 130
PV+ Y+RGCS I RCRR
Sbjct: 54 NPVNEYSRGCSKIHRCRR 71
>sp|F4ISE1|RLF12_ARATH Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1
Length = 72
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 80 KYYISYGALSANRIPCPPRSGRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
+ YI YGA+ N+ P K PV+ Y+RGCS I RCRR
Sbjct: 23 RNYIEYGAI--NKCAGPNPPPGCNPPGTEQKNPTPVNEYSRGCSKIHRCRR 71
>sp|Q5JGE6|QUEE_PYRKO 7-carboxy-7-deazaguanine synthase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=queE PE=3
SV=1
Length = 253
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 52 MLSMSFDEEEGEGPEGEG---GRRSLF-----------WQRMKYYISYGALSANRIPCPP 97
+++ F+ +GEG EG GRR +F W + YI +S+ R P
Sbjct: 4 IMAEVFNSWQGEGGSVEGSAFGRRQIFVRFAGCDLHCAWCDSREYIDASRVSSWRYEVKP 63
Query: 98 RSGRSYYTPN 107
+GR Y PN
Sbjct: 64 FTGRFEYRPN 73
>sp|O64466|RLF11_ARATH Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1
Length = 72
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 114 PVHPYTRGCSVITRCRR 130
PV+ Y+RGCS I RCRR
Sbjct: 55 PVNEYSRGCSKIHRCRR 71
>sp|A8MQ92|RLF2_ARATH Protein RALF-like 2 OS=Arabidopsis thaliana GN=RALFL2 PE=3 SV=1
Length = 97
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 100 GRSYYTPNCYKARGPVHPYTRGCSVITRCRR 130
G S P+C + P PY RGC ITRC R
Sbjct: 41 GCSPKDPSC--PQQPEKPYKRGCEKITRCER 69
>sp|A7REE5|RLF3_ARATH Protein RALF-like 3 OS=Arabidopsis thaliana GN=RALFL3 PE=3 SV=1
Length = 90
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 112 RGPVHPYTRGCSVITRCRR 130
+ P +PY RGC ITRC+R
Sbjct: 70 KQPANPYRRGCLKITRCQR 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,998,141
Number of Sequences: 539616
Number of extensions: 1865976
Number of successful extensions: 4190
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4162
Number of HSP's gapped (non-prelim): 31
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)