Query 032908
Match_columns 130
No_of_seqs 118 out of 185
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 14.3 1.2E+02 0.0039 26.4 3.1 45 8-52 331-375 (519)
2 1ans_A Neurotoxin III; NMR {An 10.9 2.1E+02 0.0071 16.1 2.5 17 105-124 8-24 (27)
3 1m56_D Cytochrome C oxidase; m 10.4 3E+02 0.01 17.1 3.4 20 8-27 29-48 (51)
4 1qle_D Cytochrome AA3, ccytoch 9.6 3.1E+02 0.011 16.4 3.1 20 8-27 21-40 (43)
5 2l55_A SILB,silver efflux prot 8.5 87 0.003 20.7 0.3 10 46-55 26-36 (82)
6 4acf_A Glutamine synthetase 1; 8.3 85 0.0029 26.7 0.2 46 71-118 336-385 (486)
7 3u02_A Putative transcription- 8.3 91 0.0031 25.0 0.4 12 114-125 46-58 (252)
8 1kal_A Kalata B1; plant protei 8.0 2.1E+02 0.0071 16.4 1.7 8 116-123 21-28 (29)
9 2qcp_X Cation efflux system pr 7.2 1.1E+02 0.0038 20.0 0.3 10 46-55 32-42 (80)
10 3qho_A Endoglucanase, 458AA lo 5.6 1.3E+02 0.0044 25.2 0.0 25 8-32 4-28 (458)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=14.25 E-value=1.2e+02 Score=26.37 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhhhhhhhHHhhhhccccCcc
Q 032908 8 VKLLKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPM 52 (130)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~aq~~vd~~~~~~~~~~~~~~~ 52 (130)
+..+.++-+.+.++++.+....+.|++.+=|.-...+.|.+.|+.
T Consensus 331 f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~~R 375 (519)
T 2a65_A 331 FSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 375 (519)
T ss_dssp HTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred HHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCCcH
Confidence 333345556677777777777889998887777888888777764
No 2
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=10.87 E-value=2.1e+02 Score=16.11 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 032908 105 TPNCYKARGPVHPYTRGCSV 124 (130)
Q Consensus 105 ~~nC~kp~~pANPYsRGCs~ 124 (130)
..+|- =-.|-|.-|||.
T Consensus 8 ~~gCp---WGQ~~~~~GCSg 24 (27)
T 1ans_A 8 WGGCP---WGQNCYPEGCSG 24 (27)
T ss_dssp TTTCS---SSCSSCSSCSSS
T ss_pred ccCCc---cccccccccCcC
Confidence 44673 345778888884
No 3
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=10.37 E-value=3e+02 Score=17.11 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032908 8 VKLLKFGFGLMLMHMISMNL 27 (130)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (130)
+|+.|.+.+....+.|++..
T Consensus 29 i~~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 29 VRMVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777666666655544
No 4
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=9.58 E-value=3.1e+02 Score=16.44 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032908 8 VKLLKFGFGLMLMHMISMNL 27 (130)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (130)
+|+.|.+.+....+.|++..
T Consensus 21 i~~~k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 21 IKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57777777666666655543
No 5
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=8.48 E-value=87 Score=20.70 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=7.4
Q ss_pred ccccCc-cccc
Q 032908 46 DALEWP-MLSM 55 (130)
Q Consensus 46 ~~~~~~-~~~~ 55 (130)
.+|+|| |||.
T Consensus 26 ~~l~wPaMTM~ 36 (82)
T 2l55_A 26 PSAQWGAMTME 36 (82)
T ss_dssp TTTTCCCEEEE
T ss_pred cccCCCceEEE
Confidence 368999 6774
No 6
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=8.30 E-value=85 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=26.3
Q ss_pred ccccccccccceeccccccCC---CCCCCCCCCCC-ccCCCCCCCCCCCCCC
Q 032908 71 RRSLFWQRMKYYISYGALSAN---RIPCPPRSGRS-YYTPNCYKARGPVHPY 118 (130)
Q Consensus 71 RR~L~~~~~~kYIsYgAL~rd---~vPC~pr~G~S-Yy~~nC~kp~~pANPY 118 (130)
||+.-+...-.+|+||.=+|. +||+...++.+ +. -..-|++-+|||
T Consensus 336 kRl~pg~~AP~~~~wg~~NRsa~iRip~~~~~~~~~ri--E~R~pd~~aNPY 385 (486)
T 4acf_A 336 KRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRL--EFRSPDSSGNPY 385 (486)
T ss_dssp HHSSTTSSSCSBSCEEETCTTSSEEECCCTTCTTTCCE--EECCCCSSSCHH
T ss_pred hccCCCCcCCceeEEeccCCCcceEecccCCCCcccee--eecCCCCCCCHH
Confidence 565543334568999977774 45764321111 12 233478899998
No 7
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=8.30 E-value=91 Score=24.99 Aligned_cols=12 Identities=50% Similarity=0.955 Sum_probs=5.0
Q ss_pred CCCCC-CCCCCcc
Q 032908 114 PVHPY-TRGCSVI 125 (130)
Q Consensus 114 pANPY-sRGCs~I 125 (130)
|..|| +|||+..
T Consensus 46 P~iP~KTrgN~a~ 58 (252)
T 3u02_A 46 PNVPYKTRGNGAV 58 (252)
T ss_dssp TTC-----CCEEE
T ss_pred CCCCccCCCCcEE
Confidence 56677 6787653
No 8
>1kal_A Kalata B1; plant protein; NMR {Oldenlandia affinis} SCOP: g.3.3.1
Probab=8.01 E-value=2.1e+02 Score=16.39 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 032908 116 HPYTRGCS 123 (130)
Q Consensus 116 NPYsRGCs 123 (130)
--|+.||+
T Consensus 21 tCyTpGCt 28 (29)
T 1kal_A 21 TCNTPGCT 28 (29)
T ss_dssp CCSCTTCB
T ss_pred eecCCCcc
Confidence 34667886
No 9
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=7.18 E-value=1.1e+02 Score=20.01 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.3
Q ss_pred ccccCc-cccc
Q 032908 46 DALEWP-MLSM 55 (130)
Q Consensus 46 ~~~~~~-~~~~ 55 (130)
.+++|| +||.
T Consensus 32 ~~l~wpaMTM~ 42 (80)
T 2qcp_X 32 AAVNWPEMTMR 42 (80)
T ss_dssp GGGTBCSEEEE
T ss_pred ccCCCCceEEE
Confidence 468999 5774
No 10
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=5.60 E-value=1.3e+02 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhh
Q 032908 8 VKLLKFGFGLMLMHMISMNLLHVEA 32 (130)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~a 32 (130)
-|+||..|++++|..++-...++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (458)
T 3qho_A 4 NTILKIVLICTILAGLFGQVVPVYA 28 (458)
T ss_dssp -------------------------
T ss_pred chHHHHHHHHHHHHHHHhccccccc
Confidence 3788998888888777644443444
Done!