Query 032908
Match_columns 130
No_of_seqs 118 out of 185
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 11:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 54.4 1.5 0.00011 23.6 0.4 13 107-122 14-26 (27)
2 d2v5za2 d.16.1.5 (A:290-401) M 13.8 27 0.002 20.6 0.9 11 113-123 99-109 (112)
3 d2dw4a3 d.16.1.5 (A:655-763) L 12.8 32 0.0023 20.0 0.9 10 113-122 97-106 (109)
4 d1b5qa2 d.16.1.5 (A:294-405) P 9.5 45 0.0033 19.5 0.8 10 113-122 100-109 (112)
5 d2a65a1 f.54.1.1 (A:5-513) Na( 9.1 1.1E+02 0.0077 23.5 3.1 42 11-52 330-371 (509)
6 d1ibia1 g.39.1.3 (A:117-144) C 9.0 43 0.0031 17.8 0.5 22 99-122 7-28 (28)
7 d2p2ea1 b.124.1.1 (A:3-120) Pu 7.2 43 0.0031 22.1 -0.1 10 114-123 31-40 (118)
8 d2iida2 d.16.1.5 (A:320-432) L 6.7 72 0.0053 18.7 0.9 9 114-122 102-110 (113)
9 d3cx5d2 f.23.11.1 (D:261-307) 6.5 1.7E+02 0.013 16.6 2.5 16 11-26 11-26 (47)
10 d1ansa_ g.11.1.1 (A:) Neurotox 6.2 2E+02 0.015 14.7 2.5 11 114-124 14-24 (27)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=54.43 E-value=1.5 Score=23.57 Aligned_cols=13 Identities=46% Similarity=1.285 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 032908 107 NCYKARGPVHPYTRGC 122 (130)
Q Consensus 107 nC~kp~~pANPYsRGC 122 (130)
||-+ .-|||+.-|
T Consensus 14 nccr---scnpytkrc 26 (27)
T d1omca_ 14 NCCR---SCNPYTKRC 26 (27)
T ss_dssp CBSS---CEETTTTEE
T ss_pred chhc---ccCcccccc
Confidence 5544 789998655
No 2
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.81 E-value=27 Score=20.63 Aligned_cols=11 Identities=27% Similarity=0.476 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 032908 113 GPVHPYTRGCS 123 (130)
Q Consensus 113 ~pANPYsRGCs 123 (130)
=..|||+|||=
T Consensus 99 W~~dp~~~GsY 109 (112)
T d2v5za2 99 WCEEQYSGGCY 109 (112)
T ss_dssp GGGCTTTCSSS
T ss_pred cCCCCccCccc
Confidence 35799999984
No 3
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.78 E-value=32 Score=19.99 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 032908 113 GPVHPYTRGC 122 (130)
Q Consensus 113 ~pANPYsRGC 122 (130)
=..+||+|||
T Consensus 97 W~~dp~~~Gs 106 (109)
T d2dw4a3 97 WRADPWARGS 106 (109)
T ss_dssp TTTCTTTSSS
T ss_pred cCCCCccCEe
Confidence 5679999998
No 4
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=9.50 E-value=45 Score=19.50 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q 032908 113 GPVHPYTRGC 122 (130)
Q Consensus 113 ~pANPYsRGC 122 (130)
=..|||+||+
T Consensus 100 W~~dp~~~Gs 109 (112)
T d1b5qa2 100 WWSDRFYKGT 109 (112)
T ss_dssp TTTCTTTSSS
T ss_pred CCCCCCcccc
Confidence 4679999997
No 5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=9.05 E-value=1.1e+02 Score=23.48 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhhhhhhhHHhhhhccccCcc
Q 032908 11 LKFGFGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPM 52 (130)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~aq~~vd~~~~~~~~~~~~~~~ 52 (130)
+..+-..+.++++.+....+.+|+..=|.-...+.|.+.|..
T Consensus 330 ~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~~~r 371 (509)
T d2a65a1 330 TAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 371 (509)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHhcCCch
Confidence 344555666777777777788888877777888888766653
No 6
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=8.98 E-value=43 Score=17.80 Aligned_cols=22 Identities=32% Similarity=0.730 Sum_probs=13.9
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCC
Q 032908 99 SGRSYYTPNCYKARGPVHPYTRGC 122 (130)
Q Consensus 99 ~G~SYy~~nC~kp~~pANPYsRGC 122 (130)
=|.+-|... |--+..||++++|
T Consensus 7 C~~~VyaAE--kviGaG~~WHk~C 28 (28)
T d1ibia1 7 CGDSVYAAE--KVIGAGKPWHKNC 28 (28)
T ss_dssp TSSEESSSS--CEESSSSEECSSC
T ss_pred cchhHHHHH--HHhcCCCccccCC
Confidence 345556433 3346788998888
No 7
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Probab=7.15 E-value=43 Score=22.06 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=7.2
Q ss_pred CCCCCCCCCC
Q 032908 114 PVHPYTRGCS 123 (130)
Q Consensus 114 pANPYsRGCs 123 (130)
-.|||+.||.
T Consensus 31 G~g~yS~ggg 40 (118)
T d2p2ea1 31 GVGALSKVGV 40 (118)
T ss_dssp SCSGGGGSSC
T ss_pred CCCccccCCc
Confidence 4678887775
No 8
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=6.74 E-value=72 Score=18.65 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q 032908 114 PVHPYTRGC 122 (130)
Q Consensus 114 pANPYsRGC 122 (130)
..|||++|+
T Consensus 102 ~~dp~~~Ga 110 (113)
T d2iida2 102 SLDKYAMGG 110 (113)
T ss_dssp GGCTTTCSS
T ss_pred CCCCCcccc
Confidence 468888886
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.49 E-value=1.7e+02 Score=16.62 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 032908 11 LKFGFGLMLMHMISMN 26 (130)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (130)
+|..+++++++.++.-
T Consensus 11 ~K~~~i~s~l~~~~~y 26 (47)
T d3cx5d2 11 LKTVIILSSLYLLSIW 26 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666655543
No 10
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=6.22 E-value=2e+02 Score=14.67 Aligned_cols=11 Identities=36% Similarity=0.615 Sum_probs=7.5
Q ss_pred CCCCCCCCCCc
Q 032908 114 PVHPYTRGCSV 124 (130)
Q Consensus 114 pANPYsRGCs~ 124 (130)
-.|-|--||+.
T Consensus 14 gqncypegcsg 24 (27)
T d1ansa_ 14 GQNCYPEGCSG 24 (27)
T ss_dssp SCSSCSSCSSS
T ss_pred ccccccCcccC
Confidence 45677778874
Done!