Query 032911
Match_columns 130
No_of_seqs 124 out of 1031
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 11:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i6ua_ d.140.1.1 (A:) Ribosom 100.0 1.5E-47 1.1E-51 272.9 12.9 123 3-130 2-129 (129)
2 d1seia_ d.140.1.1 (A:) Ribosom 100.0 7.5E-46 5.4E-50 264.0 13.4 120 3-130 2-130 (130)
3 d2gy9h1 d.140.1.1 (H:3-128) Ri 100.0 1.4E-43 1E-47 251.2 10.9 117 4-129 1-126 (126)
4 d1an7a_ d.140.1.1 (A:) Ribosom 100.0 6.2E-43 4.5E-47 250.2 11.7 120 4-130 1-136 (136)
5 d1c4oa2 c.37.1.19 (A:410-583) 41.7 19 0.0014 24.0 4.8 46 5-50 15-60 (174)
6 d1xmaa_ a.4.5.61 (A:) Predicte 32.4 21 0.0015 21.5 3.4 27 29-55 40-66 (103)
7 d2hgca1 a.4.5.77 (A:5-82) Unch 31.7 6.3 0.00046 22.7 0.6 20 36-55 31-50 (78)
8 d1t5la2 c.37.1.19 (A:415-595) 29.7 42 0.003 22.1 4.9 46 5-50 15-60 (181)
9 d1r7ja_ a.4.5.49 (A:) Sso10a ( 29.7 7.5 0.00054 23.6 0.8 42 3-48 4-49 (90)
10 d2esha1 a.4.5.61 (A:4-117) Hyp 28.5 23 0.0017 21.7 3.1 25 30-54 45-69 (114)
11 d1stza1 a.4.5.51 (A:14-100) He 24.3 19 0.0014 21.4 2.0 20 30-49 38-57 (87)
12 d1jhfa1 a.4.5.2 (A:2-72) LexA 24.0 23 0.0016 20.0 2.2 21 29-49 37-57 (71)
13 d2cfxa1 a.4.5.32 (A:1-63) Tran 23.3 47 0.0034 18.0 3.5 22 32-53 34-55 (63)
14 d2a61a1 a.4.5.28 (A:5-143) Tra 21.8 59 0.0043 19.7 4.2 32 32-65 59-90 (139)
15 d1ub9a_ a.4.5.28 (A:) Hypothet 20.8 74 0.0054 18.1 4.8 32 32-65 45-76 (100)
No 1
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=1.5e-47 Score=272.89 Aligned_cols=123 Identities=43% Similarity=0.817 Sum_probs=113.2
Q ss_pred ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccccceecc
Q 032911 3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVG 82 (130)
Q Consensus 3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~pRvy~~ 82 (130)
++|++|||||+||||++|+|.+|.+.|+||++++||++|++||||++|++.++++++.+.|+|+|+.+++|+|+ .
T Consensus 2 m~D~iaD~ltrIrNA~~~~~~~V~i~P~Skl~~~Il~iL~~eGyI~~~~~~~~~~~~~i~i~L~~~~~~~~~I~-----~ 76 (129)
T d1i6ua_ 2 LMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIK-----P 76 (129)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECS-----S
T ss_pred CccHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHHHHHHHhhhccccCCCceeEEEecccccCcccc-----c
Confidence 57999999999999999999999976999999999999999999999999888888999999999988889999 6
Q ss_pred cceeecccccc-----CCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911 83 VKEIEGWTARL-----LPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130 (130)
Q Consensus 83 ~~~isk~~~r~-----l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~ 130 (130)
.+.+|+|+.|. +|.+|+|++|||||+|||||+|||++|+|||+||+||
T Consensus 77 ~~~vskp~~r~~~~~~~~~~glGi~IlSTSkGimt~~eAr~~~vGGEiLc~V~ 129 (129)
T d1i6ua_ 77 RFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 129 (129)
T ss_dssp CCEECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred eEeeecccccchhhccCCCCCCeEEEEECCccccCHHHHHHcCCCceEEEEEC
Confidence 66777776544 4669999999999999999999999999999999999
No 2
>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=7.5e-46 Score=264.00 Aligned_cols=120 Identities=27% Similarity=0.530 Sum_probs=108.8
Q ss_pred ccchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc------
Q 032911 3 RVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS------ 76 (130)
Q Consensus 3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~------ 76 (130)
+.|++|||||+||||++++|.+|.+ |+|+++.++|++|++||||++|++.++++.+.++|.|||..++ |+|+
T Consensus 2 m~D~iaD~lt~IrNA~~a~k~~V~i-p~Skl~~~il~vL~~eGyI~~f~~~~~~~~~~i~v~Lk~~~~~-~~i~~~~~vS 79 (130)
T d1seia_ 2 MTDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPNE-RVITGLKRIS 79 (130)
T ss_dssp CSHHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSSS-BSCCCEEECC
T ss_pred ccchHHHHHHHHHHHHHcCCCEEEe-cCcHHHHHHHHHHHHhcccceeEEeeccCCceEEEEecccCCc-cccccceecc
Confidence 4699999999999999999999998 9999999999999999999999999988888999999999876 7776
Q ss_pred -c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911 77 -P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130 (130)
Q Consensus 77 -p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~ 130 (130)
| |+|.+.++++++. +|+|++|||||+|+|||+||+++++|||+||+||
T Consensus 80 kpg~r~y~~~~~l~~~~------~g~G~~IvSTskGimt~~eA~~~~iGGell~~Vf 130 (130)
T d1seia_ 80 KPGLRVYVKAHEVPRVL------NGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp BTTBCCEECGGGCCCCC------TTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred cCCeEEEcchhhhhhhh------hhceEEEEECCCCeeeHHHHHHhCCCcEEEEEEC
Confidence 4 6666666664432 8999999999999999999999999999999997
No 3
>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-43 Score=251.18 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=104.8
Q ss_pred cchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCCCcccc-------
Q 032911 4 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVIS------- 76 (130)
Q Consensus 4 ~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~~~~I~------- 76 (130)
.|++||||++||||+++++.+|.+ |+|+++.++|++|++||||++|++.+++ +..++|.|||+.++ |+|+
T Consensus 1 qD~iaD~l~~I~NA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~f~~~~~~-k~~i~i~Lky~~~k-~vI~~~~~vSk 77 (126)
T d2gy9h1 1 QDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDT-KPELELTLKYFQGK-AVVESIQRVSR 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEECC-BCCHHHHHHHHHHHHHTSEEEEEEECSS-SCEEEEEECCCSSS-CSCSCCEECSC
T ss_pred CCcHHHHHHHhHhHHHcCCCEEEe-eCcHHHHHHHHHHHhcCcccccEEecCC-CceEEEEEeccCCC-EEEecceEeec
Confidence 389999999999999999999998 9999999999999999999999987654 57899999999776 7886
Q ss_pred c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEE
Q 032911 77 P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFF 129 (130)
Q Consensus 77 p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V 129 (130)
| |+|++.++++++. +|+|++|||||+|||||+||+++|+|||+||+|
T Consensus 78 p~~r~y~~~~~l~~~~------~g~G~~IlSTskGimt~~eA~~~~vGGelL~~V 126 (126)
T d2gy9h1 78 PGLRIYKRKDELPKVM------AGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 126 (126)
T ss_dssp SSSCCBCCTTTCCCGG------GGTSCEEEEETTEEEEHHHHHHHTCCCEEEEEC
T ss_pred CCcccccchhhhhhcc------CceeEEEecCCCceEEHHHHHHhCCCcEEEEEC
Confidence 4 6666666665433 899999999999999999999999999999997
No 4
>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=6.2e-43 Score=250.20 Aligned_cols=120 Identities=31% Similarity=0.455 Sum_probs=105.2
Q ss_pred cchHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeeeEEeeCCccceEEEEEcCccCC-------Ccccc
Q 032911 4 VSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNK-------CGVIS 76 (130)
Q Consensus 4 ~~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~Lky~~~~-------~~~I~ 76 (130)
.|+|||||++||||+++++.+|.+ |+|+++.+||++|++||||++|++.+++....+.+.++|..+. .|+|+
T Consensus 1 tD~iaD~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 79 (136)
T d1an7a_ 1 TDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIH 79 (136)
T ss_dssp CCHHHHHHHHHHHHHTTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEECEEEECSSSCCSEEESCC
T ss_pred CCcHHHHHHHHHhHHHcCCCEEEe-cccHHHHHHHHHHHHCCcccceEEeccCCcceeeeeeehhhhcccCCCCCCcccc
Confidence 389999999999999999999998 9999999999999999999999999877777788887654321 25564
Q ss_pred -------c--ceecccceeeccccccCCCCcceEEEEECCCCcccHHHHHHcCCCcEEEEEEC
Q 032911 77 -------P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130 (130)
Q Consensus 77 -------p--Rvy~~~~~isk~~~r~l~~~g~Gi~IlSTskGimt~~eAr~~~lGGevLc~V~ 130 (130)
| |+|++.++++++. +|+|++|||||+|||||+||+++|+|||+||+||
T Consensus 80 ~i~~vSkP~~Rvy~~~~~l~~~~------~g~G~~IlSTskGimt~~eA~~~~iGGe~L~~v~ 136 (136)
T d1an7a_ 80 HIRRISKPGRRVYVGVKEIPRVR------RGLGIAILSTSKGVLTDREARKLGVGGELICEVW 136 (136)
T ss_dssp CEEECSBTTBCCEECGGGCCCGG------GGTSEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred eeEEeccCCcccccCcchhhhcc------CCeEEEEEeCCCCeeeHHHHHHcCCCCEEEEEEC
Confidence 5 7777777775543 8999999999999999999999999999999999
No 5
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=41.70 E-value=19 Score=24.05 Aligned_cols=46 Identities=13% Similarity=0.310 Sum_probs=35.6
Q ss_pred chHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeee
Q 032911 5 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEF 50 (130)
Q Consensus 5 ~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~ 50 (130)
+.+-|++..|+.-...+.+.+.+.+.-+.+..+...|.++|+=..+
T Consensus 15 ~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~ 60 (174)
T d1c4oa2 15 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARY 60 (174)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEE
Confidence 3567889898876655555544459999999999999999997655
No 6
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=32.44 E-value=21 Score=21.46 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHhccCCceeeeEEeeC
Q 032911 29 PSSKVIIKFLLVMQKHGYIGEFEYVDD 55 (130)
Q Consensus 29 p~sk~~~~il~iL~~eGyI~~~~~~~~ 55 (130)
+........|+-|.++|||++....++
T Consensus 40 is~gslY~~L~rLe~~GlI~~~~~~~~ 66 (103)
T d1xmaa_ 40 IKETTLYSAFARLEKNGYIKSYYGEET 66 (103)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEEEEC
T ss_pred CCCCchHHHHHHHHHCCCeEEEeeccC
Confidence 556788899999999999998655443
No 7
>d2hgca1 a.4.5.77 (A:5-82) Uncharacterized protein YjcQ {Bacillus subtilis [TaxId: 1423]}
Probab=31.70 E-value=6.3 Score=22.74 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=16.1
Q ss_pred HHHHHhccCCceeeeEEeeC
Q 032911 36 KFLLVMQKHGYIGEFEYVDD 55 (130)
Q Consensus 36 ~il~iL~~eGyI~~~~~~~~ 55 (130)
.-.+.|++||||-++...++
T Consensus 31 davnflkregyiigvhysdd 50 (78)
T d2hgca1 31 DAVNFLKREGYIIGVHYSDD 50 (78)
T ss_dssp HHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHhcCeEEEEeccCC
Confidence 45788999999999877554
No 8
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=29.69 E-value=42 Score=22.09 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=34.2
Q ss_pred chHHHHHHhhhhhhhhCccceeecCCcHHHHHHHHHhccCCceeee
Q 032911 5 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEF 50 (130)
Q Consensus 5 ~~l~d~lt~IrNa~~a~~~~v~~~p~sk~~~~il~iL~~eGyI~~~ 50 (130)
+.+.|++..|+.....+.+.+.+.+.-.....+...|.+.|+=..+
T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~ 60 (181)
T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAY 60 (181)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeE
Confidence 4567889999887655544444447777889999999999986655
No 9
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=29.69 E-value=7.5 Score=23.59 Aligned_cols=42 Identities=7% Similarity=0.185 Sum_probs=28.7
Q ss_pred ccchHHHHHHhhhhhhhhCccceeecCC----cHHHHHHHHHhccCCcee
Q 032911 3 RVSVLNDALKSMYNAEKRGKRQVMIRPS----SKVIIKFLLVMQKHGYIG 48 (130)
Q Consensus 3 ~~~~l~d~lt~IrNa~~a~~~~v~~~p~----sk~~~~il~iL~~eGyI~ 48 (130)
.+.+++|+|..++++. ++..+ +-. ......+++-|.+.|+|+
T Consensus 4 ~~eIi~DIL~~~~~g~--~kT~i--~~~aNLs~~~~~kyl~~L~~~GLI~ 49 (90)
T d1r7ja_ 4 KLEIIQAILEACKSGS--PKTRI--MYGANLSYALTGRYIKMLMDLEIIR 49 (90)
T ss_dssp HHHHHHHHHHHHTTCB--CHHHH--HHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCC--CccHH--HHHcCCCHHHHHHHHHHHHHCCCee
Confidence 5788999999998764 22222 122 233457889999999996
No 10
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=28.46 E-value=23 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHhccCCceeeeEEee
Q 032911 30 SSKVIIKFLLVMQKHGYIGEFEYVD 54 (130)
Q Consensus 30 ~sk~~~~il~iL~~eGyI~~~~~~~ 54 (130)
.......+|.-|.++|||.+....+
T Consensus 45 ~~gtiY~~L~rLe~~G~I~~~~~~~ 69 (114)
T d2esha1 45 HMGNIYRVLADLEESGFLSTEWDTT 69 (114)
T ss_dssp CCCCHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCcHHHHHHHHHHCCCeEEEeecC
Confidence 3456789999999999999765433
No 11
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.30 E-value=19 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHhccCCceee
Q 032911 30 SSKVIIKFLLVMQKHGYIGE 49 (130)
Q Consensus 30 ~sk~~~~il~iL~~eGyI~~ 49 (130)
++....+.+..|.++|||..
T Consensus 38 S~aTIRn~m~~LE~~G~l~~ 57 (87)
T d1stza1 38 SSATIRNDMKKLEYLGYIYQ 57 (87)
T ss_dssp CHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHHHCCcccC
Confidence 57778899999999999974
No 12
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=23.99 E-value=23 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=17.8
Q ss_pred CCcHHHHHHHHHhccCCceee
Q 032911 29 PSSKVIIKFLLVMQKHGYIGE 49 (130)
Q Consensus 29 p~sk~~~~il~iL~~eGyI~~ 49 (130)
.++......++.|.+.|||+.
T Consensus 37 ~S~stv~~~l~~Le~kG~I~r 57 (71)
T d1jhfa1 37 RSPNAAEEHLKALARKGVIEI 57 (71)
T ss_dssp SSHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHCcCeec
Confidence 456678899999999999984
No 13
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=23.31 E-value=47 Score=17.95 Aligned_cols=22 Identities=9% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccCCceeeeEEe
Q 032911 32 KVIIKFLLVMQKHGYIGEFEYV 53 (130)
Q Consensus 32 k~~~~il~iL~~eGyI~~~~~~ 53 (130)
..+..=++-|.++|+|++|...
T Consensus 34 ~tv~~Ri~~L~~~giI~~~~~~ 55 (63)
T d2cfxa1 34 PSVTERVRQLESFGIIKQYTLE 55 (63)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeeeEEEE
Confidence 4455667889999999999754
No 14
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=21.80 E-value=59 Score=19.69 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHHHHHHhccCCceeeeEEeeCCccceEEEEE
Q 032911 32 KVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL 65 (130)
Q Consensus 32 k~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~L 65 (130)
...-.+++-|.+.|||.-.. +++.++...|.|
T Consensus 59 ~tvs~~l~~L~~~gli~r~~--~~~D~R~~~i~L 90 (139)
T d2a61a1 59 STVTGLVKRLEADGYLTRTP--DPADRRAYFLVI 90 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEE--ETTEEEEEEEEE
T ss_pred ccchHHHHHHHhcCeeeeee--ccCCCCeEEEEE
Confidence 34557899999999999553 333345566666
No 15
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.83 E-value=74 Score=18.13 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=20.5
Q ss_pred HHHHHHHHHhccCCceeeeEEeeCCccceEEEEE
Q 032911 32 KVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL 65 (130)
Q Consensus 32 k~~~~il~iL~~eGyI~~~~~~~~~~~~~i~i~L 65 (130)
...-..++.|.+.|||..... ...++...+.|
T Consensus 45 ~~vs~~l~~L~~~glV~~~~~--~~d~r~~~~~L 76 (100)
T d1ub9a_ 45 GNLDSHIRVLERNGLVKTYKV--IADRPRTVVEI 76 (100)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--CSSSCEEEEEE
T ss_pred ccccHHHHHHhhhceeEEEEc--CcCCccccccC
Confidence 344567899999999996533 22244455555
Done!