RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 032911
(130 letters)
>gnl|CDD|215075 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional.
Length = 130
Score = 262 bits (672), Expect = 2e-92
Identities = 121/130 (93%), Positives = 125/130 (96%)
Query: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
MVR SVLNDALK+MYNAEKRGKRQV+IRPSSKV+IKFL VMQKHGYIGEFE VDDHR+GK
Sbjct: 1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGK 60
Query: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
IVVELNGRLNKCGVISPRFDV VKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKN
Sbjct: 61 IVVELNGRLNKCGVISPRFDVKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 121 VGGKVLGFFY 130
VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130
>gnl|CDD|185487 PTZ00158, PTZ00158, 40S ribosomal protein S15A; Provisional.
Length = 130
Score = 251 bits (644), Expect = 3e-88
Identities = 100/130 (76%), Positives = 115/130 (88%)
Query: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
MVR+SVL D L+S+ NAEK+GKRQV+IRPSSKV++KFL VMQKHGYIGEFE VDDHR+GK
Sbjct: 1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGK 60
Query: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
IVV LNGRLNKCGVISPRFDV + E E W +LPSRQFG++VLTTS GIMDHEEARR++
Sbjct: 61 IVVNLNGRLNKCGVISPRFDVTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRH 120
Query: 121 VGGKVLGFFY 130
GGK+LGFFY
Sbjct: 121 TGGKILGFFY 130
>gnl|CDD|179721 PRK04034, rps8p, 30S ribosomal protein S8P; Reviewed.
Length = 130
Score = 192 bits (490), Expect = 1e-64
Identities = 69/130 (53%), Positives = 92/130 (70%)
Query: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
MV + L +AL ++ NAE GK++V+I+P+SK+I L VMQ GYIGEFEY+DD RAGK
Sbjct: 1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGK 60
Query: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
VEL GR+NKCG I PR+ V E E W R LP+R FG ++++TS G+M H+EAR K
Sbjct: 61 FKVELLGRINKCGAIKPRYPVKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKG 120
Query: 121 VGGKVLGFFY 130
+GG +L + Y
Sbjct: 121 IGGVLLAYVY 130
>gnl|CDD|223174 COG0096, RpsH, Ribosomal protein S8 [Translation, ribosomal
structure and biogenesis].
Length = 132
Score = 148 bits (377), Expect = 2e-47
Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Query: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK 60
M+ L D L + NAE+ K++V+ P+SK+ L V++K GYI +FE +DD R GK
Sbjct: 1 MMMTDPLADMLTRIRNAERA-KKEVVSMPASKLKGAILKVLKKEGYIKDFEVIDDGRKGK 59
Query: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGW-TARLLPSRQ--FGYIVLTTSAGIMDHEEAR 117
+ V+L R+N CGVISP V + + R LP+ G +++TS G+M +EAR
Sbjct: 60 LRVQLKYRINGCGVISPIKRVSKPGLRVYEKKRELPAVLNGLGIAIVSTSKGVMTDKEAR 119
Query: 118 RKNVGGKVLGFFY 130
+K VGG+VL + +
Sbjct: 120 KKGVGGEVLCYVW 132
>gnl|CDD|215906 pfam00410, Ribosomal_S8, Ribosomal protein S8.
Length = 129
Score = 122 bits (309), Expect = 4e-37
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 7 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK-IVVEL 65
+ D L + NA+ K V+I P+SK+ I L ++++ GYI FE ++D R GK I V L
Sbjct: 3 IADMLTRIRNAQMAKKETVLI-PASKLKISILKILKEEGYIKGFEVIEDERNGKFIKVTL 61
Query: 66 ---------NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
+ + R V KE+ ++L G +L+TS G+M EA
Sbjct: 62 KYDKNGKPVITGIKRISKPGLRVYVSYKELP----KVL--GGLGIAILSTSKGVMTDREA 115
Query: 117 RRKNVGGKVLGFFY 130
R+K VGG+VL + +
Sbjct: 116 RKKGVGGEVLCYVW 129
>gnl|CDD|234658 PRK00136, rpsH, 30S ribosomal protein S8; Validated.
Length = 130
Score = 62.4 bits (153), Expect = 1e-13
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 25/124 (20%)
Query: 16 NAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL---------N 66
NA+ V + P+SK+ + ++++ GYI ++E +D + G + + L
Sbjct: 15 NAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLKYGEGEPVIE 73
Query: 67 G--RLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGY--IVLTTSAGIMDHEEARRKNVG 122
G R++K G+ R E+ P G +++TS G+M EAR+ VG
Sbjct: 74 GIKRVSKPGL---RVYKKKDEL--------PKVLNGLGIAIVSTSKGVMTDREARKAGVG 122
Query: 123 GKVL 126
G+VL
Sbjct: 123 GEVL 126
>gnl|CDD|214344 CHL00042, rps8, ribosomal protein S8.
Length = 132
Score = 44.4 bits (106), Expect = 1e-06
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 9 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGR 68
D L + NA K V I P++ + + ++ + G+I ++ +V+ L R
Sbjct: 8 DMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYR 66
Query: 69 LNKCGV-------IS-P--RFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
NK IS P R KEI R+L G ++L+TS GIM EAR
Sbjct: 67 GNKKKPYITTLKRISKPGLRIYSNYKEI----PRVLGG--MGIVILSTSKGIMTDREARL 120
Query: 119 KNVGGKVL 126
K +GG++L
Sbjct: 121 KGIGGEIL 128
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 29.6 bits (66), Expect = 0.48
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 18 EKRGKRQVMIRPSSKVI--IKFLLVMQKHGYIGEFEYVDDHRAGKIVVE 64
++RGKR ++I+P + I +++L+ KH + E ++V R G ++++
Sbjct: 2588 DRRGKRSILIKPVDEQISPVEYLVSRSKHVIVNEGDFV---RKGDLLMD 2633
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 27.4 bits (60), Expect = 2.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 4 VSVLNDALKSM--YNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKI 61
V+V D S+ Y+ E K++ +PS L +++K +I F VD+ GK
Sbjct: 1604 VTVYRDGSLSVQVYSVEGEKKKRYKPKPSEYAKKVLLEIVEKEPWIKNFINVDEILNGKR 1663
Query: 62 VVELNGRLNKCGVISPR 78
EL L+ + P+
Sbjct: 1664 EKELTFSLSHVSAVKPK 1680
>gnl|CDD|203599 pfam07236, Phytoreo_S7, Phytoreovirus S7 protein. This family
consists of several Phytoreovirus S7 proteins which are
thought to be viral core proteins.
Length = 506
Score = 26.7 bits (59), Expect = 3.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 16/52 (30%)
Query: 2 VRVSVLNDALKSMYNA-------------EKRGKRQVMIR---PSSKVIIKF 37
V L D +K+ YNA EK G +++R P+S VI+ F
Sbjct: 15 VLTRNLTDHVKAFYNAIIGRFVSGPDTITEKLGMDSIILRKIVPTSTVILDF 66
>gnl|CDD|193600 cd09986, LOTUS_1_TDRD7, The first LOTUS domain on Tudor-containing
protein 7 (TDRD7). The first LOTUS domain on
Tudor-containing protein 7 (TDRD7): TDRD7 contains three
N-terminal LOTUS domains and three Tudor domain repeats
at the C-terminus. It belongs to the evolutionary
conserved Tudor domain-containing protein (TDRD) family
involved in germ cell development. In mice, TDRD7
together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a
ribonucleoprotein complex in the intermitochondrial
cements (IMCs) and the chromatoid bodies (CBs) involving
in RNA processing for spermatogenesis. TDRD7 is
functionally essential for the differentiation of germ
cells. The exact molecular function of LOTUS domain on
TDRD7 remains to be characterized. Its occurrence in
proteins associated with RNA metabolism suggests that it
might be involved in RNA binding function. The presence
of several basic residues and RNA fold recognition
motifs support this hypothesis. The RNA binding function
might be the first step of regulating mRNA translation
or localization.
Length = 88
Score = 25.5 bits (56), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 70 NKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVL 104
+K GV PR KE+ T +P +Q GY L
Sbjct: 15 SKGGVSLPRLQGEYKEL---TGEQIPFKQLGYHTL 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.411
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,805,473
Number of extensions: 626503
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 22
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)