RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032911
         (130 letters)



>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 129

 Score =  136 bits (343), Expect = 4e-43
 Identities = 59/125 (47%), Positives = 88/125 (70%)

Query: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVEL 65
            L +AL  + N E+ GK+ V I+P+SK+I + L VMQ +GYIGEFE+++D RAG   VEL
Sbjct: 5   PLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVEL 64

Query: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125
            G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ +GG++
Sbjct: 65  IGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRL 124

Query: 126 LGFFY 130
           L + Y
Sbjct: 125 LAYVY 129


>d1seia_ d.140.1.1 (A:) Ribosomal protein S8 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 130

 Score =  103 bits (258), Expect = 3e-30
 Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 3/124 (2%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L ++ NA      ++ + P+SK+  +   ++++ G+I ++EY++D++ G + + L 
Sbjct: 6   IADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLK 64

Query: 67  GRLNKCGVISPRFDVGVKEIEGWTARLLPS--RQFGYIVLTTSAGIMDHEEARRKNVGGK 124
              N+  +   +            A  +P      G  +L+TS G++  +EAR+K  GG+
Sbjct: 65  YGPNERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGE 124

Query: 125 VLGF 128
           ++ +
Sbjct: 125 IIAY 128


>d2gy9h1 d.140.1.1 (H:3-128) Ribosomal protein S8 {Escherichia coli
           [TaxId: 562]}
          Length = 126

 Score = 98.9 bits (246), Expect = 2e-28
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L  + N +   K  V + PSSK+ +    V+++ G+I +F+   D +  ++ + L 
Sbjct: 4   IADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKVEGDTK-PELELTLK 61

Query: 67  GRLNKCGVISPRFDV---GVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGG 123
               K  V+     V   G++  +            G  V++TS G+M    AR+  +GG
Sbjct: 62  YFQGKA-VVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGG 120

Query: 124 KVLGF 128
           +++ +
Sbjct: 121 EIICY 125


>d1an7a_ d.140.1.1 (A:) Ribosomal protein S8 {Thermus thermophilus
           [TaxId: 274]}
          Length = 136

 Score = 90.1 bits (223), Expect = 7e-25
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 7   LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELN 66
           + D L  + NA +  K    + P+S+   + L ++ + G+I  +E VD      + V L 
Sbjct: 4   IADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLK 62

Query: 67  GRLNKCGVISPRFDVGVKEIE-----------GWTARLLPSRQFGYIVLTTSAGIMDHEE 115
               + G   PR +  +  I            G        R  G  +L+TS G++   E
Sbjct: 63  YGPRRQGP-DPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDRE 121

Query: 116 ARRKNVGGKVLGFFY 130
           AR+  VGG+++   +
Sbjct: 122 ARKLGVGGELICEVW 136


>d1hn0a2 b.18.1.17 (A:25-234) Chondroitin ABC lyase I, N-terminal
           domain {Proteus vulgaris [TaxId: 585]}
          Length = 210

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)

Query: 59  GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTA 91
           G + ++   +L         F V +    GW A
Sbjct: 99  GYLTIDFGEKLISTSEAQAGFKVKLD-FTGWRA 130


>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
           CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
          Length = 209

 Score = 23.7 bits (51), Expect = 7.7
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 75  ISPRFDVGVKEIEGWTARLLPSRQFGY-IVLTTSAGIMDHEEAR----RKNVGGKVLGFF 129
           ISP       +  GW A ++        +V     GI+   + R     +  G K+ G  
Sbjct: 1   ISPAQIAEALQGRGWDAEIVTDASMAGQLVDVRPEGILKCVDGRGSDNTRMGGPKMPGGI 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal
           domain {Caulobacter crescentus [TaxId: 155892]}
          Length = 162

 Score = 23.5 bits (49), Expect = 8.6
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 5   SVLNDALKSMYNAEKRGKRQVM 26
           ++L  A + +Y A+  G+  V+
Sbjct: 136 ALLKRADEGVYQAKASGRNAVV 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 501,157
Number of extensions: 22665
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)