BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032912
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1N|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1N|F Chain F, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1O|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1Q|C Chain C, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
Length = 13
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 8 QVVGWPPIRSYRK 20
QVVGWPP+R+YRK
Sbjct: 1 QVVGWPPVRNYRK 13
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 44 APYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKG-SEYEPTYE 92
APY+R + YP K N++ G+Y E G G S Y+P ++
Sbjct: 198 APYMRPV-------YPT--KTFPNLYTLATGLYPESHGIVGNSMYDPVFD 238
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 44 APYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKG-SEYEPTYE 92
APY+R + YP K N++ G+Y E G G S Y+P ++
Sbjct: 163 APYMRPV-------YPT--KTFPNLYTLATGLYPESHGIVGNSMYDPVFD 203
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 44 APYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKG-SEYEPTYE 92
APY+R + YP K N++ G+Y E G G S Y+P ++
Sbjct: 163 APYMRPV-------YPT--KTFPNLYTLATGLYPESHGIVGNSMYDPVFD 203
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 29 EGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMF-KFTVGVYSEREGYKGS 85
+GEC + + + D L ++ YNG PEL + + F + GV S E YK +
Sbjct: 932 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNT 989
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 29 EGECAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMF-KFTVGVYSEREGYKGS 85
+GEC + + + D L ++ YNG PEL + + F + GV S E YK +
Sbjct: 924 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNT 981
>pdb|2P1G|A Chain A, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
pdb|2P1G|B Chain B, Crystal Structure Of A Putative Xylanase From Bacteroides
Fragilis
Length = 249
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 34 GIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYED 93
G+ V+ +P+ +K+ L + +PEL K+L+N + + + G E +D
Sbjct: 103 GLLEDVTAAYSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKALSGKEVHYLPKD 162
Query: 94 K---DG-DWMLVGDV 104
K DG W+ GD+
Sbjct: 163 KLEPDGLPWIKNGDI 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,157,972
Number of Sequences: 62578
Number of extensions: 174689
Number of successful extensions: 438
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)