Query 032912
Match_columns 130
No_of_seqs 104 out of 490
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 97.2 0.00089 3.1E-08 46.4 6.4 57 34-102 6-62 (89)
2 1wmh_B Partitioning defective- 97.1 0.0013 4.5E-08 45.5 6.2 69 35-114 7-76 (86)
3 2kkc_A Sequestosome-1; P62, PB 96.3 0.0084 2.9E-07 42.4 5.8 61 34-104 5-80 (102)
4 1q1o_A Cell division control p 96.0 0.04 1.4E-06 38.8 7.9 74 34-113 5-85 (98)
5 2ktr_A Sequestosome-1; autopha 95.6 0.031 1E-06 40.5 6.4 62 33-104 19-95 (117)
6 1pqs_A Cell division control p 93.5 0.11 3.7E-06 34.9 4.5 58 50-113 6-64 (77)
7 2bkf_A Zinc-finger protein NBR 92.7 0.31 1.1E-05 33.6 6.0 54 36-102 8-61 (87)
8 1oey_J P40-PHOX, neutrophil cy 92.0 0.27 9.1E-06 35.2 5.0 40 51-103 28-67 (107)
9 1wj6_A KIAA0049 protein, RSGI 92.0 0.36 1.2E-05 34.2 5.7 62 35-111 15-76 (101)
10 1oey_A P67-PHOX, neutrophil cy 90.7 1.1 3.7E-05 30.4 6.9 69 36-118 7-78 (83)
11 1e8p_A Endoglucanase, dockerin 76.0 0.73 2.5E-05 28.4 0.6 14 87-100 19-32 (46)
12 3o27_A Putative uncharacterize 55.5 6.1 0.00021 26.0 1.9 18 84-101 42-59 (68)
13 2j4m_A Endoglucanase 45A; dock 54.2 2.9 9.9E-05 29.5 0.2 13 88-100 21-33 (100)
14 2npt_A Dual specificity mitoge 45.3 43 0.0015 23.5 5.1 57 35-103 15-72 (106)
15 1wgr_A Growth factor receptor- 42.0 70 0.0024 21.9 5.8 40 32-72 7-46 (100)
16 2yim_A Probable alpha-methylac 40.7 11 0.00037 31.0 1.7 67 47-114 181-253 (360)
17 2i1s_A Hypothetical protein; m 29.4 52 0.0018 24.2 3.7 39 34-72 8-48 (188)
18 3k7i_B IHH, HHG-2, indian hedg 26.7 32 0.0011 26.6 2.1 25 46-70 132-156 (187)
19 1v0z_A Neuraminidase; glycosid 24.3 45 0.0015 28.4 2.7 35 15-49 135-170 (389)
20 4ed9_A CAIB/BAIF family protei 22.0 26 0.0009 29.0 0.9 27 87-115 243-272 (385)
21 1nmb_N N9 neuraminidase; compl 21.7 48 0.0016 28.9 2.4 35 15-49 217-252 (470)
22 1f8d_A Neuraminidase; hydrolas 21.6 46 0.0016 28.3 2.3 35 15-49 135-170 (388)
23 3bux_B E3 ubiquitin-protein li 20.6 1.3E+02 0.0044 25.0 4.7 47 54-101 248-295 (329)
24 1mg4_A Doublecortin, doublecor 20.0 1.4E+02 0.0047 20.7 4.2 38 32-69 13-54 (113)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=97.21 E-value=0.00089 Score=46.40 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=44.5
Q ss_pred cceeEEEEcCccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEec
Q 032912 34 GIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 102 (130)
Q Consensus 34 ~~~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvG 102 (130)
..=||++-+|.-+ .+.+..--+|++|...|.++|.+.. +..+++.|.|.|||+.-+-
T Consensus 6 ~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~----------~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 6 QVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN----------EQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp CEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS----------SCCEEEEECCSSSCCEECC
T ss_pred eEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC----------CCeEEEEEECCCCCccccc
Confidence 3567889999844 4444445699999999999999862 3468999999999987653
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.09 E-value=0.0013 Score=45.50 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=52.1
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecCc-ChhhHhhce
Q 032912 35 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PWEMFMSSC 113 (130)
Q Consensus 35 ~~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGDv-PW~~F~~sv 113 (130)
.-||.+-++.--=-.+|-+...+|++|+..|+++|.+. ...+.+.|.|.|||++-+-++ -..+-+.++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a 75 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----------GLDVLLGYTDAHGDLLPLTNDDSLHRALASG 75 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----------TCCCEEEEECTTSCEEECCSHHHHHHHTTSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----------CCCEEEEEECCCCCEeeecCHHHHHHHHHhC
Confidence 45777777773333566667789999999999999864 235899999999999987543 555556666
Q ss_pred e
Q 032912 114 K 114 (130)
Q Consensus 114 k 114 (130)
|
T Consensus 76 ~ 76 (86)
T 1wmh_B 76 P 76 (86)
T ss_dssp S
T ss_pred C
Confidence 6
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=96.30 E-value=0.0084 Score=42.40 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=44.4
Q ss_pred cceeEEEEcCc----cccceeecCC-----------CCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCe
Q 032912 34 GIYVKVSMDGA----PYLRKIDLKL-----------YNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDW 98 (130)
Q Consensus 34 ~~~vKV~meG~----~igRkvDL~~-----------~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~ 98 (130)
+.-||++..|. .==|++-|.. ..+|++|...+.++|..-. +..|.+.|.|.|||+
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----------~~~f~l~Y~DedGDl 74 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----------PGGFQAHYRAERGDL 74 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------SSCEEEEEECTTCCE
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----------CCcEEEEEECCCCCE
Confidence 45688888752 2335555532 2489999999999998431 336999999999999
Q ss_pred EEecCc
Q 032912 99 MLVGDV 104 (130)
Q Consensus 99 mLvGDv 104 (130)
+-+.+.
T Consensus 75 ItiSsD 80 (102)
T 2kkc_A 75 VAFSSD 80 (102)
T ss_dssp EEECSH
T ss_pred EEecCH
Confidence 887654
No 4
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=95.95 E-value=0.04 Score=38.79 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=54.4
Q ss_pred cceeEEEEcCc----ccc--ceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecCc-Ch
Q 032912 34 GIYVKVSMDGA----PYL--RKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PW 106 (130)
Q Consensus 34 ~~~vKV~meG~----~ig--RkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGDv-PW 106 (130)
+.-|||+-+.. .++ |.|=+..-=+|++|+..+.+-|....+. + -....++-|+|.|||+..+++. =|
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~----~--i~~~~klkYkDEdGD~Vtl~sddDl 78 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN----N--ISPITKIKYQDEDGDFVVLGSDEDW 78 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS----C--CCCCCCEEEECSSSCEEEECSHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc----c--ccceeEEEEEcCCCCEEEEcCHHHH
Confidence 35677776642 133 7777788889999999999999975121 0 0245789999999999888765 78
Q ss_pred hhHhhce
Q 032912 107 EMFMSSC 113 (130)
Q Consensus 107 ~~F~~sv 113 (130)
++-+.++
T Consensus 79 ~~A~e~~ 85 (98)
T 1q1o_A 79 NVAKEML 85 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 5
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.64 E-value=0.031 Score=40.51 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=45.0
Q ss_pred CcceeEEEEcCc----cccceeecC-----------CCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCC
Q 032912 33 AGIYVKVSMDGA----PYLRKIDLK-----------LYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGD 97 (130)
Q Consensus 33 ~~~~vKV~meG~----~igRkvDL~-----------~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD 97 (130)
.+.-||++..|. .==|++-|. .-.+|++|...+.++|..-. +..|.+.|.|.|||
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~----------~~~f~l~YkDEdGD 88 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR----------PGGFQAHYRAERGD 88 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------SSCEEEEEECTTCC
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC----------CCcEEEEEECCCCC
Confidence 567899999752 122555554 13599999999999996431 33599999999999
Q ss_pred eEEecCc
Q 032912 98 WMLVGDV 104 (130)
Q Consensus 98 ~mLvGDv 104 (130)
++-+-..
T Consensus 89 lItISsD 95 (117)
T 2ktr_A 89 LVAFSSD 95 (117)
T ss_dssp EEEECSH
T ss_pred EEEecCH
Confidence 9877654
No 6
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=93.51 E-value=0.11 Score=34.87 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=42.3
Q ss_pred eecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecCc-ChhhHhhce
Q 032912 50 IDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDV-PWEMFMSSC 113 (130)
Q Consensus 50 vDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGDv-PW~~F~~sv 113 (130)
|=...-=+|++|...+.+-|..... ++ .....++-|+|.|||+...++. =|++-+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~-----~~-~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHN-----NN-ISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTS-----SC-SCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccccc-----cc-ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3344556899999999999995311 00 1346789999999999877655 788887765
No 7
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=92.74 E-value=0.31 Score=33.62 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=41.1
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEec
Q 032912 36 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVG 102 (130)
Q Consensus 36 ~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvG 102 (130)
-.||.-.|...=--|.-..--++++|...+..+|+++ .++|.|.|.|||-.-|-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------SEEEEEECTTSCEEEEC
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------ceEEEEEcCCCCEEEEe
Confidence 3578888874332353344778999999999999986 25899999999987663
No 8
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.97 E-value=0.27 Score=35.18 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=33.5
Q ss_pred ecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecC
Q 032912 51 DLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD 103 (130)
Q Consensus 51 DL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGD 103 (130)
||+..-.|.+|..-..+-|..+ +-.|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~-------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE-------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS-------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc-------------ceeeeeecCCCCEEEEcc
Confidence 5788889999999999999854 347999999999986644
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=91.95 E-value=0.36 Score=34.21 Aligned_cols=62 Identities=6% Similarity=0.116 Sum_probs=46.2
Q ss_pred ceeEEEEcCccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecCcChhhHhh
Q 032912 35 IYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGDVPWEMFMS 111 (130)
Q Consensus 35 ~~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGDvPW~~F~~ 111 (130)
.-.||.-.|...=--|.-..--++++|...+..+|+++ .++|.|.|.|||-.-|= .+.+|-+
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------------~~~IkY~DEenD~V~i~--Sq~E~eE 76 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------TIQIKYLDEENEEVSIN--SQGEYEE 76 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------------SBCCEEECTTSCEECCC--SHHHHHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------------ceEEEEecCCCCEEEEe--cHHHHHH
Confidence 35688999985433464445778999999999999986 25799999999988764 3555533
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.70 E-value=1.1 Score=30.43 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=53.5
Q ss_pred eeEEEEcCccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEc-CCCCeEEecCcChhhHhhcee
Q 032912 36 YVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYED-KDGDWMLVGDVPWEMFMSSCK 114 (130)
Q Consensus 36 ~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD-~eGD~mLvGDvPW~~F~~svk 114 (130)
=|||+-. +--.|....=-+|.+|...|.+-+... ++ .-+|-|.| .+|.+++.+|.-++.-.+.++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~-~~----------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~ 72 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR-LE----------HTKLSYRPRDSNELVPLSEDSMKDAWGQVK 72 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC-GG----------GCCEEECCTTCSSCEECCTTTHHHHHTTCB
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC-cc----------eeEEEeeCCCCCCeeccChHHHHHHHHhcc
Confidence 4566655 677788888889999999999999875 22 23699999 688888999999998877755
Q ss_pred --eeEE
Q 032912 115 --RLRI 118 (130)
Q Consensus 115 --rl~I 118 (130)
||++
T Consensus 73 n~~LtL 78 (83)
T 1oey_A 73 NYCLTL 78 (83)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 4443
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=75.99 E-value=0.73 Score=28.37 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=11.8
Q ss_pred eeeEEEcCCCCeEE
Q 032912 87 YEPTYEDKDGDWML 100 (130)
Q Consensus 87 ~~l~YeD~eGD~mL 100 (130)
-.|+|+|.||||=.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 35999999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=55.53 E-value=6.1 Score=26.01 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.2
Q ss_pred CCceeeEEEcCCCCeEEe
Q 032912 84 GSEYEPTYEDKDGDWMLV 101 (130)
Q Consensus 84 ~~~~~l~YeD~eGD~mLv 101 (130)
+.++.++++|++|+..|+
T Consensus 42 gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 42 DDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TCCEEEEEEEETTEEEEE
T ss_pred CCEEEEEEecCCCeEEEE
Confidence 447899999999999885
No 13
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=54.22 E-value=2.9 Score=29.46 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=11.4
Q ss_pred eeEEEcCCCCeEE
Q 032912 88 EPTYEDKDGDWML 100 (130)
Q Consensus 88 ~l~YeD~eGD~mL 100 (130)
.|+|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 6999999999954
No 14
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=45.34 E-value=43 Score=23.49 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=39.6
Q ss_pred ceeEEEEc-CccccceeecCCCCChHHHHHHHHhHhcccccccccccCCCCCceeeEEEcCCCCeEEecC
Q 032912 35 IYVKVSMD-GAPYLRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGYKGSEYEPTYEDKDGDWMLVGD 103 (130)
Q Consensus 35 ~~vKV~me-G~~igRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~~~~~~~l~YeD~eGD~mLvGD 103 (130)
.-+.+.-. |.++-=.||-..+=++.+|..++.+...-. .--..-|||.+||.+-|--
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a------------T~TAFeYEDE~gDRITVRS 72 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA------------TTTAFEYEDEDGDRITVRS 72 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS------------CCSEEEEECTTSCEEEECS
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc------------eeeeeeeccccCCeeEEcc
Confidence 44455555 666888888777778999999888766532 1125789999999988743
No 15
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=41.96 E-value=70 Score=21.94 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=33.3
Q ss_pred CCcceeEEEEcCccccceeecCCCCChHHHHHHHHhHhccc
Q 032912 32 CAGIYVKVSMDGAPYLRKIDLKLYNGYPELLKALENMFKFT 72 (130)
Q Consensus 32 ~~~~~vKV~meG~~igRkvDL~~~~sY~eL~~~L~~MF~~~ 72 (130)
.+...|||+++.. -.+.|+...--.=.++.+.|..-+.+.
T Consensus 7 ~~k~vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 7 GRPHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp CSCEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCCEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 3457999999776 569999999999999999988887764
No 16
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=40.66 E-value=11 Score=31.03 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=36.5
Q ss_pred cceeecCCCCChHHHHHHHHhHhcccccccccccCC--CC-CceeeEEEcCCCCeEEec---CcChhhHhhcee
Q 032912 47 LRKIDLKLYNGYPELLKALENMFKFTVGVYSEREGY--KG-SEYEPTYEDKDGDWMLVG---DVPWEMFMSSCK 114 (130)
Q Consensus 47 gRkvDL~~~~sY~eL~~~L~~MF~~~~g~~~~~~~~--~~-~~~~l~YeD~eGD~mLvG---DvPW~~F~~svk 114 (130)
|..||++++++--.+.......+... |....+.+. .. .-+-=+|+=+||-|+.++ |--|+.||..+-
T Consensus 181 Gq~Vdvsl~d~~~~~~~~~~~~~~~~-g~~~~r~g~~~~~~~p~y~~y~t~DG~~i~i~~~~~~~w~~l~~~lg 253 (360)
T 2yim_A 181 GQVVDAAMVDGSSVLIQMMWAMRATG-MWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIEPQFYAAMLAGLG 253 (360)
T ss_dssp CEEEEEEHHHHHHHHTHHHHHHHHTT-SCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCSHHHHHHHHHHHT
T ss_pred ceEEEeeHHHHHHHHhHHHHHHHHcC-CCCCCCCCCCCCCCCCCCCeEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 78888888776555443332222211 111111111 11 111347999999888776 445999988654
No 17
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=29.36 E-value=52 Score=24.22 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=35.3
Q ss_pred cceeEEEEcCc--cccceeecCCCCChHHHHHHHHhHhccc
Q 032912 34 GIYVKVSMDGA--PYLRKIDLKLYNGYPELLKALENMFKFT 72 (130)
Q Consensus 34 ~~~vKV~meG~--~igRkvDL~~~~sY~eL~~~L~~MF~~~ 72 (130)
..-+||..+|. +|=|.|.+..--+..+|-..|...|+-.
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 35689999986 7999999999999999999999999965
No 18
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=26.74 E-value=32 Score=26.55 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=18.6
Q ss_pred ccceeecCCCCChHHHHHHHHhHhc
Q 032912 46 YLRKIDLKLYNGYPELLKALENMFK 70 (130)
Q Consensus 46 igRkvDL~~~~sY~eL~~~L~~MF~ 70 (130)
-||.||++.-+...+-+-.|++|--
T Consensus 132 EGRAvDIttsdrd~~k~g~LarLAv 156 (187)
T 3k7i_B 132 EGRAVDITTSDRDRNKYGLLARLAV 156 (187)
T ss_dssp GTCEEEEEETTCCGGGHHHHHHHHH
T ss_pred cceeeEEEecccchhHHHHHHHHHH
Confidence 4899999998777776666666644
No 19
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=24.27 E-value=45 Score=28.37 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=26.3
Q ss_pred CccccccccccccccC-cCCcceeEEEEcCccccce
Q 032912 15 IRSYRKNSLQQKKNEG-ECAGIYVKVSMDGAPYLRK 49 (130)
Q Consensus 15 v~s~r~n~~~~~~~~~-~~~~~~vKV~meG~~igRk 49 (130)
|+||++|.+.-|++++ .-++.|+-|.-||-+-|+.
T Consensus 135 i~Sw~~nILRTQESeCvCinGtC~vvmTDG~as~~A 170 (389)
T 1v0z_A 135 IPSWAGNILRTQESECVCHKGVCPVVMTDGPANNRA 170 (389)
T ss_dssp EECSSSSCCBCCSSCCCCBTTBEEEEEEESCSSSCC
T ss_pred hhhhhhcccccccceeEEECCEEEEEEecCCCCCcc
Confidence 6899999999888776 3456677777777776664
No 20
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=22.01 E-value=26 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.5
Q ss_pred eeeEEEcCCCCeEEecC---cChhhHhhceee
Q 032912 87 YEPTYEDKDGDWMLVGD---VPWEMFMSSCKR 115 (130)
Q Consensus 87 ~~l~YeD~eGD~mLvGD---vPW~~F~~svkr 115 (130)
|. +|+=+|| |+.++- --|+.||...-+
T Consensus 243 y~-~y~t~DG-~i~v~~~~~~~w~~l~~~lg~ 272 (385)
T 4ed9_A 243 YQ-TLSVSDG-YFIIACGNDGQFGKLSTLLGI 272 (385)
T ss_dssp EE-EEEETTE-EEEEECCSHHHHHHHHHHTTC
T ss_pred cc-ceecCCC-cEEEEeCCHHHHHHHHHHcCC
Confidence 44 7999999 777653 359999876543
No 21
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=21.66 E-value=48 Score=28.90 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.5
Q ss_pred CccccccccccccccC-cCCcceeEEEEcCccccce
Q 032912 15 IRSYRKNSLQQKKNEG-ECAGIYVKVSMDGAPYLRK 49 (130)
Q Consensus 15 v~s~r~n~~~~~~~~~-~~~~~~vKV~meG~~igRk 49 (130)
|+||++|.+.-|++|+ .-++.|+-|.-||-+-|+.
T Consensus 217 I~SW~~nILRTQESeCvCinGtC~vvmTDG~a~~~A 252 (470)
T 1nmb_N 217 INTWARNILRTQESECVCQNGVCPVVFTDGSATGPA 252 (470)
T ss_dssp EECSSSSCCBCCSSCCCCBTTBEEEEEEEECSSSCE
T ss_pred hhhhhhcccccccceeEEECCEEEEEEecCCCCCcc
Confidence 6899999999888776 3455666666677666654
No 22
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=21.61 E-value=46 Score=28.28 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=25.5
Q ss_pred CccccccccccccccC-cCCcceeEEEEcCccccce
Q 032912 15 IRSYRKNSLQQKKNEG-ECAGIYVKVSMDGAPYLRK 49 (130)
Q Consensus 15 v~s~r~n~~~~~~~~~-~~~~~~vKV~meG~~igRk 49 (130)
|+||++|.+.-|++++ .-++.|+-|.-||-+-|+.
T Consensus 135 i~Sw~~nILRTQESeCvCinGtC~vvmTDG~as~~A 170 (388)
T 1f8d_A 135 INTWARNILRTQESECVCHNGVCPVVFTDGSATGPA 170 (388)
T ss_dssp EECSSSSCCBCCSSCCCCBTTEEEEEEEEECSSSCE
T ss_pred hhhhhhcccccccceeEEECCEEEEEEecCCCCCcc
Confidence 6899999999888776 3455666676777766654
No 23
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=20.57 E-value=1.3e+02 Score=25.05 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCCChHHHHHHHHhHhcccccccccccC-CCCCceeeEEEcCCCCeEEe
Q 032912 54 LYNGYPELLKALENMFKFTVGVYSEREG-YKGSEYEPTYEDKDGDWMLV 101 (130)
Q Consensus 54 ~~~sY~eL~~~L~~MF~~~~g~~~~~~~-~~~~~~~l~YeD~eGD~mLv 101 (130)
+|=+|+|..+.|+.--... |...-+-. -.-..|.|.|.+.||+.++.
T Consensus 248 aFlTydEv~~~L~~~~~kp-GsYIfR~ScTrlGqwAIgyV~~~~~I~qt 295 (329)
T 3bux_B 248 AFLTYDEVKARLQKFIHKP-GSYIFRLSCTRLGQWAIGYVTADGNILQT 295 (329)
T ss_dssp TTCCHHHHHHHHGGGTTST-TEEEEEECSSSTTSEEEEEECTTSCEEEE
T ss_pred heeeHHHHHHHHHHhcCCC-CcEEEEeccCccCceEEEEECCCCceeee
Confidence 3778999999999732211 21100000 01347999999999998874
No 24
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=20.01 E-value=1.4e+02 Score=20.70 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCcceeEEEEcCccc--cceeec--CCCCChHHHHHHHHhHh
Q 032912 32 CAGIYVKVSMDGAPY--LRKIDL--KLYNGYPELLKALENMF 69 (130)
Q Consensus 32 ~~~~~vKV~meG~~i--gRkvDL--~~~~sY~eL~~~L~~MF 69 (130)
....-|.|+.+|.++ |+++=+ ..+.+++.|.+.|-+-.
T Consensus 13 ~kak~I~~yrNGD~~~~G~~~~v~~~~~~tfd~LL~~lT~~L 54 (113)
T 1mg4_A 13 KKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTL 54 (113)
T ss_dssp CCSEEEEEEETTCSSCCCEEEEECTTTCSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 345678999999998 777555 57899999999986533
Done!