BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032916
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 327 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 379
Query: 125 NG 126
NG
Sbjct: 380 NG 381
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 322 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 374
Query: 125 NG 126
NG
Sbjct: 375 NG 376
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 327 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 379
Query: 125 NG 126
NG
Sbjct: 380 NG 381
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 328 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 380
Query: 125 NG 126
NG
Sbjct: 381 NG 382
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 328 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 380
Query: 125 NG 126
NG
Sbjct: 381 NG 382
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 328 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 380
Query: 125 NG 126
NG
Sbjct: 381 NG 382
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 328 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 380
Query: 125 NG 126
NG
Sbjct: 381 NG 382
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 66 PLTFVGEWVAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNN-HWSLEWMIK 124
PL + +W E K D RR+ +AQL+ + T GW +W+ K N WS + +
Sbjct: 322 PLLDISQWSDE------HKTDTRRYIEAQLDAF-EYTGGWVFWSWKTENAPEWSFQTLTY 374
Query: 125 NG 126
NG
Sbjct: 375 NG 376
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 13 LFPLASGLRGSVIDVHYYNLFSDIF--NSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFV 70
+P + L +VI + YYN+F+ F +M+V + + + R+ L+ T+S V
Sbjct: 189 FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRA--LDVRTSSKAQAVNV 246
Query: 71 GEW 73
W
Sbjct: 247 AIW 249
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 98 YGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL 130
YG A G AYWT+K N W W + GYI++
Sbjct: 174 YGVAEDGKAYWTVK---NSWGPSWG-EQGYIRV 202
>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
Saccharomyces Cerevisiae
Length = 408
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 74 VAEWQVSGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVNNHWSLEW 121
+A W S KE+ RR+ +AQL+ + GW W K + SLEW
Sbjct: 338 IAYW--SDERKENTRRYVEAQLDAF-EMRGGWIIWCYKTES---SLEW 379
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 98 YGRATFGWAYWTLKNVNNHWSLEWMIKNGYIKL 130
YG G YWT+K N W EW K GYI++
Sbjct: 169 YGTTIDGTKYWTVK---NSWGPEWGEK-GYIRM 197
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 14 FPLASGLRGSVIDVHYYNLFSDIFN--SMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71
+P + L VI + YYN+F+ IF +M+V + I + ++ L+ T N + V
Sbjct: 82 WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKA--LDFRTPRNAKIVNVC 139
Query: 72 EWV 74
W+
Sbjct: 140 NWI 142
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 12 ELFPLASGLRGSVIDVHYYNLFSDIF 37
E +P L +V+ + YYN+F+ IF
Sbjct: 77 ETWPFGELLCKAVLSIDYYNMFTSIF 102
>pdb|3KZ9|A Chain A, Crystal Structure Of The Master Transcriptional Regulator,
Smcr, In Vibrio Vulnificus Provides Insight Into Its Dna
Recognition Mechanism
pdb|3KZ9|B Chain B, Crystal Structure Of The Master Transcriptional Regulator,
Smcr, In Vibrio Vulnificus Provides Insight Into Its Dna
Recognition Mechanism
pdb|3KZ9|C Chain C, Crystal Structure Of The Master Transcriptional Regulator,
Smcr, In Vibrio Vulnificus Provides Insight Into Its Dna
Recognition Mechanism
pdb|3KZ9|D Chain D, Crystal Structure Of The Master Transcriptional Regulator,
Smcr, In Vibrio Vulnificus Provides Insight Into Its Dna
Recognition Mechanism
Length = 206
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 21 RGSVIDVH----YYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTS 63
RG V D H NLF I S+ VQ N TN +A+L+++ +S
Sbjct: 151 RGEVCDQHNPEDLANLFHGICYSLFVQAN----RTNNTAELSKLVSS 193
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 11 RELFPLASGLRGSVIDVHYYN 31
REL PL G G+++ + YY
Sbjct: 143 RELLPLMEGRNGAIVTLSYYG 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,069,602
Number of Sequences: 62578
Number of extensions: 140865
Number of successful extensions: 472
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 27
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)