Query 032916
Match_columns 130
No_of_seqs 115 out of 568
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 98.5 4.5E-07 9.8E-12 69.3 8.5 91 19-114 190-281 (281)
2 COG2730 BglC Endoglucanase [Ca 95.9 0.0081 1.8E-07 49.7 3.4 109 19-129 243-382 (407)
3 PF14834 GST_C_4: Glutathione 61.2 4.9 0.00011 28.0 1.3 32 65-96 62-104 (117)
4 PF12055 DUF3536: Domain of un 28.3 36 0.00078 27.3 1.5 28 80-107 67-95 (285)
5 PF01715 IPPT: IPP transferase 26.1 90 0.002 24.2 3.4 42 25-71 22-63 (253)
6 PLN02748 tRNA dimethylallyltra 21.3 1.4E+02 0.0031 25.5 3.9 43 24-71 76-118 (468)
7 PF13200 DUF4015: Putative gly 19.1 2E+02 0.0043 23.3 4.2 67 39-109 241-311 (316)
8 PRK14729 miaA tRNA delta(2)-is 18.6 1.9E+02 0.0041 23.2 3.9 43 24-71 57-99 (300)
9 TIGR00174 miaA tRNA isopenteny 17.3 1.9E+02 0.0042 22.9 3.7 43 24-71 53-95 (287)
10 COG0324 MiaA tRNA delta(2)-iso 16.5 2.3E+02 0.005 22.9 3.9 40 27-71 60-99 (308)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.55 E-value=4.5e-07 Score=69.33 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=51.5
Q ss_pred CCCCeEEEeeeceeeccCCCCC-CHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccCCCcchHHHHHHHHHHHHHH
Q 032916 19 GLRGSVIDVHYYNLFSDIFNSM-TVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVSGASKEDLRRFAKAQLEV 97 (130)
Q Consensus 19 ~~~nv~lD~H~Y~~f~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~~~~~~~~~~r~f~~aQl~~ 97 (130)
...+++++.|.|..+....... ........+.......+.. ....+.|++||||.+...-.. ....+..+.++.
T Consensus 190 ~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~ 264 (281)
T PF00150_consen 190 ADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW-AKKNGKPVVVGEFGWSNNDGN----GSTDYADAWLDY 264 (281)
T ss_dssp TTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH-HHHTTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred ccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH-HHHcCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence 3689999999999664322111 1111111111111111211 223477999999998732211 223333344777
Q ss_pred HhhCCCceEEEEeEeCC
Q 032916 98 YGRATFGWAYWTLKNVN 114 (130)
Q Consensus 98 ~~~~~~Gw~FWtwK~E~ 114 (130)
+++.+.||+||+||.++
T Consensus 265 ~~~~~~g~~~W~~~~~~ 281 (281)
T PF00150_consen 265 LEQNGIGWIYWSWKPNS 281 (281)
T ss_dssp HHHTTCEEEECEESSSS
T ss_pred HHHCCCeEEEEecCCCC
Confidence 78778999999999753
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.88 E-value=0.0081 Score=49.67 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCCCeEEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHh-------------------------hhhhhcCCCceEEEee
Q 032916 19 GLRGSVIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQL-------------------------NQITTSNGPLTFVGEW 73 (130)
Q Consensus 19 ~~~nv~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l-------------------------~~~~~~~~~~~ivGEW 73 (130)
+..+...+.|.|.++.... .+....|+-..|..+...+ .......+.++++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~ 321 (407)
T COG2730 243 GSSDGGNDNGVYIVPVDDP-GLTANKHLYAPHVYGDDVLNGGSWTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEF 321 (407)
T ss_pred ccccccccCCceeeeccch-hhhccceeccceeecchhhcCCCCCccCCcccccccceeeecceeecccccceeeeeccc
Confidence 5566677777777776654 3444555555554432111 0001123456777777
Q ss_pred ccccC-C----CcchHHHHHHHHHHHHHHHhhCCCceEEEEeEeCC-CCcchHHHHhCCccc
Q 032916 74 VAEWQ-V----SGASKEDLRRFAKAQLEVYGRATFGWAYWTLKNVN-NHWSLEWMIKNGYIK 129 (130)
Q Consensus 74 S~a~~-~----~~~~~~~~r~f~~aQl~~~~~~~~Gw~FWtwK~E~-~~Ws~~~~v~~G~i~ 129 (130)
....+ - .++.++..+.+.++|.+++.. +.+|+.|+++.++ ..|++++....+.++
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (407)
T COG2730 322 GGNYNANNPNPQDERKDNVKVYLENQLDVFDT-TTYWINNPWSGGNDTGYDIEDDINLGLFP 382 (407)
T ss_pred cCccccCCCCccchhhHHHHHHhhhhhhhccc-eeEEEeecccCCCCCccchhhcchhhccc
Confidence 77663 1 246778899999999999997 7899999999996 888888876665543
No 3
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=61.20 E-value=4.9 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=17.8
Q ss_pred CCceEEEeeccccC-----------CCcchHHHHHHHHHHHHH
Q 032916 65 GPLTFVGEWVAEWQ-----------VSGASKEDLRRFAKAQLE 96 (130)
Q Consensus 65 ~~~~ivGEWS~a~~-----------~~~~~~~~~r~f~~aQl~ 96 (130)
+.+.+.||||.|-. ....-.+.++.|++.|..
T Consensus 62 g~~~LFGewsIAD~dlA~ml~Rl~~~gd~vP~~l~~Ya~~qwq 104 (117)
T PF14834_consen 62 GGPNLFGEWSIADADLALMLNRLVTYGDPVPERLADYAERQWQ 104 (117)
T ss_dssp --SSTTSS--HHHHHHHHHHHHHHTTT----HHHHHHHHHHHT
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 55779999999852 233446778888888864
No 4
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=28.33 E-value=36 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.6
Q ss_pred CcchHHHHHHHHHHHHHHHhh-CCCceEE
Q 032916 80 SGASKEDLRRFAKAQLEVYGR-ATFGWAY 107 (130)
Q Consensus 80 ~~~~~~~~r~f~~aQl~~~~~-~~~Gw~F 107 (130)
+++.+...-+..++|..+--. +++||||
T Consensus 67 ~~~e~~~al~LLEmQr~~l~mfTSCgWFF 95 (285)
T PF12055_consen 67 SPEERVEALKLLEMQRHALLMFTSCGWFF 95 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 345555667788888776554 4679998
No 5
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=26.10 E-value=90 Score=24.15 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=21.5
Q ss_pred EEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEE
Q 032916 25 IDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71 (130)
Q Consensus 25 lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivG 71 (130)
+-||.+-+.++. ..-|..+..+.+..- +.++...+..|+|||
T Consensus 22 vpHhlid~~~p~-e~ysv~~f~~~a~~~----i~~i~~rgk~PIlvG 63 (253)
T PF01715_consen 22 VPHHLIDILDPD-EEYSVGDFQRDAREA----IEDILARGKIPILVG 63 (253)
T ss_dssp S-EESSS-B-TT-S---HHHHHHHHHHH----HHHHHHTT-EEEEEE
T ss_pred CCEeeeeeeccc-CCCCHHHHHHHHHHH----HHHHHhcCCeEEEEC
Confidence 568888887764 456665555554433 333334567799998
No 6
>PLN02748 tRNA dimethylallyltransferase
Probab=21.33 E-value=1.4e+02 Score=25.48 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=27.0
Q ss_pred EEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEE
Q 032916 24 VIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71 (130)
Q Consensus 24 ~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivG 71 (130)
.+-||.+-+.++. ...+..+..+.+... |+++...+..|+|||
T Consensus 76 ~VpHHLid~v~p~-e~ysv~~F~~~A~~~----I~~I~~rgk~PIlVG 118 (468)
T PLN02748 76 GVPHHLLGVISPS-VEFTAKDFRDHAVPL----IEEILSRNGLPVIVG 118 (468)
T ss_pred CCCCeeEeecCCC-CcCcHHHHHHHHHHH----HHHHHhcCCCeEEEc
Confidence 4568888877664 456666665555443 333334557899998
No 7
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=19.09 E-value=2e+02 Score=23.30 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=36.9
Q ss_pred CCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEEeeccccCCC--cc-hHHHHHHHHHHHHHHHhhC-CCceEEEE
Q 032916 39 SMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVGEWVAEWQVS--GA-SKEDLRRFAKAQLEVYGRA-TFGWAYWT 109 (130)
Q Consensus 39 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivGEWS~a~~~~--~~-~~~~~r~f~~aQl~~~~~~-~~Gw~FWt 109 (130)
...|.+.+..........+.. . ..+.++==|=-+-+.+ +. ++..-...+++|+++-+.+ ..||.+|+
T Consensus 241 ~~~PY~~v~~~~~~~~~~~~~---~-~~~~~~RPWlQ~Ft~~~~~~~~~~Yg~~ev~aQI~A~~d~g~~~~llWn 311 (316)
T PF13200_consen 241 DLEPYEIVYRSLKRAKERLRG---L-EGPAIIRPWLQDFTASWLGKNYKEYGPEEVRAQIQALKDAGIEGWLLWN 311 (316)
T ss_pred ccChHHHHHHHHHHHHHHhhc---C-CCCCeEecccccccccccccCccccCHHHHHHHHHHHHHcCCCeEEEEC
Confidence 445555555444433333221 1 1244555555443322 12 3444478899999998874 47999996
No 8
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=18.61 E-value=1.9e+02 Score=23.20 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=26.7
Q ss_pred EEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEE
Q 032916 24 VIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71 (130)
Q Consensus 24 ~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivG 71 (130)
.+-||.+-+-++. ...|..+..+.+... ++++...+..|++||
T Consensus 57 ~i~Hhlid~~~p~-e~~sv~~f~~~a~~~----i~~i~~~gk~PilvG 99 (300)
T PRK14729 57 HIKHHLVDFLEPI-KEYNLGIFYKEALKI----IKELRQQKKIPIFVG 99 (300)
T ss_pred CCCeeeeeccCCC-CceeHHHHHHHHHHH----HHHHHHCCCCEEEEe
Confidence 4568888887664 356666665555543 332233556789998
No 9
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=17.33 E-value=1.9e+02 Score=22.94 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=23.9
Q ss_pred EEEeeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEE
Q 032916 24 VIDVHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71 (130)
Q Consensus 24 ~lD~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivG 71 (130)
.++||.+-+.++.. .-+..+....+... ++++...+..|++||
T Consensus 53 ~v~hhlid~~~~~~-~~~v~~f~~~a~~~----i~~~~~~g~~pi~vG 95 (287)
T TIGR00174 53 GIPHHLIDILDPSE-SYSAADFQTLALNA----IADITARGKIPLLVG 95 (287)
T ss_pred CccEEEEEEechhh-eEcHHHHHHHHHHH----HHHHHhCCCCEEEEc
Confidence 56778777765542 44444444443332 333333456789998
No 10
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=16.48 E-value=2.3e+02 Score=22.93 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=21.8
Q ss_pred eeeceeeccCCCCCCHhhHHHHHhhhhhHHhhhhhhcCCCceEEE
Q 032916 27 VHYYNLFSDIFNSMTVQQNIDFVYTNRSAQLNQITTSNGPLTFVG 71 (130)
Q Consensus 27 ~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ivG 71 (130)
||.+-+-++. ...|..+..+.+.+. +.+...++..|++||
T Consensus 60 HhliDi~~p~-e~ysa~~f~~~a~~~----i~~i~~rgk~pIlVG 99 (308)
T COG0324 60 HHLIDIRDPT-ESYSAAEFQRDALAA----IDDILARGKLPILVG 99 (308)
T ss_pred EEEecccCcc-ccccHHHHHHHHHHH----HHHHHhCCCCcEEEc
Confidence 5555454443 366665555544433 333344556899998
Done!