BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032918
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KLB|A Chain A, Crystal Structure Of Putative Flavoprotein In Complex With
           Fmn (Yp_213683.1) From Bacteroides Fragilis Nctc 9343 At
           1.75 A Resolution
          Length = 162

 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 43  AVGANLFYPKTFPVARFILFVITPAW------LANGLREGIAAGVYCLIIGVLVIITEIR 96
           A+   LF+P+ + V    LFV  P W      + N   E           G +V+     
Sbjct: 68  AISGTLFHPEKYEV----LFVGFPVWWYIAPTIINTFLESYD------FAGKIVVPFATS 117

Query: 97  GIGGFRNCECNLHS 110
           G  G  NCE NLH 
Sbjct: 118 GGSGIGNCEKNLHK 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.337    0.150    0.501 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,209
Number of Sequences: 62578
Number of extensions: 133719
Number of successful extensions: 303
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)