BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032918
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------ 54
++RT ++ M T LLV Y+F + P+V+F+ G FG W+A +A+ LF+PK F
Sbjct: 64 LDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEI 123
Query: 55 PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
PVA ++ V++P+ +A LRE V CL+I + I+ GGF+N + S
Sbjct: 124 PVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGISNT 183
Query: 115 LGVAFLFFFTV 125
+G+ L + V
Sbjct: 184 IGIVALLVYPV 194
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
++RT ++ M T+LL+ Y+F S P+V+F L G G W+A +AV LF+PK FP
Sbjct: 65 LDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEM 124
Query: 57 --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
+ +L V++P +LA+ +R V L IG ++ IR GGFRN S
Sbjct: 125 PGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNT 184
Query: 115 LGVAFLFFFTV 125
LG+ L + V
Sbjct: 185 LGIILLLVYPV 195
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFI 60
++RT +++M T+LL+ Y+F S P+++F I RG+ G W+A +AV LF+PK AR
Sbjct: 62 LDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKH---AREY 118
Query: 61 LFVITPAWLANGLREGIAAGVY---------CLIIGVLVIITEIRGIGGFRNCECNLHSF 111
L + L + + AG + CL IG ++ IR GGFRN +
Sbjct: 119 LELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGI 178
Query: 112 SYCLGVAFLFFFTVLYL 128
S +G+ L F V L
Sbjct: 179 SNTVGIICLVVFPVWAL 195
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 8 SHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------PVARFIL 61
+++ +LL YLF+S P V+F++LR G W+A L V LF P F P A +L
Sbjct: 54 NNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILL 113
Query: 62 FVITPAWLANGLREGI--AAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAF 119
V+TP+ + R+ + G CL+ +I + GG +N +Y + +
Sbjct: 114 IVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWI 173
Query: 120 LFFFTVL 126
LF + +L
Sbjct: 174 LFVYPIL 180
>sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus genotype 3b (isolate Tr-Kj)
PE=1 SV=3
Length = 3023
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 53 TFPVARFI-------LFVITPAW-LANGLREGIAAGVYCLIIGVLVIITEIRGIGG 100
T P+ ++I L V T AW L G+ +AA YCL +G +VI+ I +GG
Sbjct: 1646 THPITKYIMACMSADLEVTTSAWVLVGGVLAALAA--YCLSVGCVVIVGHIE-LGG 1698
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 24 PTVLFKILRGQFGCWVACLAVGANLFYPKTFPVA------RFILFVITPAWLAN--GLRE 75
P+ + ++G++G W A LA+ A LF+ TFP +L ++ P + N G +E
Sbjct: 118 PSSIVAWIKGEYGVWAAFLALIARLFF--TFPGELELPFIALLLVIVAPYQVMNIRGKQE 175
Query: 76 G 76
G
Sbjct: 176 G 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.337 0.150 0.501
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,991,391
Number of Sequences: 539616
Number of extensions: 1802256
Number of successful extensions: 5257
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5248
Number of HSP's gapped (non-prelim): 21
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.8 bits)