Query 032918
Match_columns 130
No_of_seqs 67 out of 69
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05562 WCOR413: Cold acclima 100.0 2.2E-65 4.7E-70 405.9 5.3 121 1-121 61-187 (187)
2 PF03619 Solute_trans_a: Organ 62.4 9 0.00019 31.2 3.2 43 79-130 11-53 (274)
3 PF10167 NEP: Uncharacterised 53.3 9.8 0.00021 28.6 1.8 13 86-98 30-42 (118)
4 PF07884 VKOR: Vitamin K epoxi 35.0 44 0.00095 24.2 2.8 29 79-107 8-36 (137)
5 PLN02595 cytochrome c oxidase 32.5 39 0.00084 25.3 2.2 18 76-93 48-65 (102)
6 PF11700 ATG22: Vacuole efflux 31.9 2.7E+02 0.0059 24.6 7.7 90 1-94 94-215 (477)
7 KOG4523 Uncharacterized conser 31.9 33 0.00071 27.3 1.8 13 86-98 30-42 (157)
8 COG3008 PqiB Paraquat-inducibl 29.6 48 0.001 31.1 2.8 34 78-111 25-59 (553)
9 PRK05760 F0F1 ATP synthase sub 29.6 46 0.001 24.7 2.2 33 24-56 65-100 (124)
10 KOG2641 Predicted seven transm 29.6 62 0.0013 29.0 3.3 42 80-130 44-85 (386)
11 COG3223 Predicted membrane pro 29.2 97 0.0021 24.4 4.0 54 38-93 68-131 (138)
12 PF11466 Doppel: Prion-like pr 28.3 52 0.0011 19.9 1.8 16 83-98 9-24 (30)
13 PF03188 Cytochrom_B561: Eukar 26.8 1.6E+02 0.0035 20.8 4.6 50 75-126 40-89 (137)
14 PF04165 DUF401: Protein of un 26.0 4.6E+02 0.01 23.1 8.5 53 65-118 240-295 (385)
15 COG3136 GlpM Uncharacterized m 25.6 1.4E+02 0.0031 22.7 4.2 59 40-98 15-86 (111)
16 smart00665 B561 Cytochrome b-5 25.5 1.5E+02 0.0032 21.1 4.2 51 74-126 38-88 (129)
17 KOG1720 Protein tyrosine phosp 24.9 49 0.0011 27.9 1.8 13 82-94 161-173 (225)
18 COG3594 NolL Fucose 4-O-acetyl 24.4 59 0.0013 28.7 2.3 27 10-36 70-96 (343)
19 PF04932 Wzy_C: O-Antigen liga 23.1 1.4E+02 0.0029 21.0 3.6 37 61-97 3-39 (163)
20 PRK14889 VKOR family protein; 22.4 1.3E+02 0.0028 22.8 3.5 32 78-111 14-45 (143)
21 PHA02898 virion envelope prote 22.2 93 0.002 23.0 2.6 45 76-120 14-59 (92)
22 PF09323 DUF1980: Domain of un 21.7 3.7E+02 0.008 20.6 6.0 62 62-127 25-86 (182)
23 PRK06099 F0F1 ATP synthase sub 21.7 1.4E+02 0.0031 22.6 3.6 26 22-47 65-90 (126)
24 smart00756 VKc Family of likel 21.6 1.6E+02 0.0034 21.9 3.8 20 78-97 10-29 (142)
25 PHA03048 IMV membrane protein; 20.3 1.4E+02 0.0031 22.1 3.2 46 75-120 13-58 (93)
No 1
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=100.00 E-value=2.2e-65 Score=405.95 Aligned_cols=121 Identities=39% Similarity=0.748 Sum_probs=118.2
Q ss_pred CCccccccchhhHHHHHHHHhhchhhhHhHhcccchhHHHHHHHHHHHhcCCCCch------hhhhHhhcChhHHHhhhh
Q 032918 1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV------ARFILFVITPAWLANGLR 74 (130)
Q Consensus 1 ldrtnwkT~i~tslLVPyi~lslP~~if~~~rGe~G~WiAFlavv~RLFfp~~fP~------a~iLLivvaP~~~~~~~R 74 (130)
+|||||||||+|||||||+|+|+|+++|||+|||||+||||+|+++|||||+|||| +++||+||||+++|+++|
T Consensus 61 ldrtnwkTniltslLVPyi~lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R 140 (187)
T PF05562_consen 61 LDRTNWKTNILTSLLVPYIFLSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFR 140 (187)
T ss_pred ccCccchhhhhHHHHHHHHHHhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhcc
Confidence 69999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHH
Q 032918 75 EGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLF 121 (130)
Q Consensus 75 ~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~ 121 (130)
|+|+|++|||+|||||+|||||++||+||||+|+|||+||+||++++
T Consensus 141 ~~~~G~vi~l~I~~YLl~qHi~~~Gg~r~aF~~~~gis~t~~I~ll~ 187 (187)
T PF05562_consen 141 GSQIGAVICLAIACYLLQQHIRASGGFRNAFTQGSGISNTIGIILLF 187 (187)
T ss_pred CCeeehhHHHHHHHHHHHHHHHhcCChhhhhhcccccceeeEEEEeC
Confidence 99999999999999999999999999999999999999999998753
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=62.45 E-value=9 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHHHHHHhhhcC
Q 032918 79 AGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS 130 (130)
Q Consensus 79 G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~v~pi~~L~~ 130 (130)
-+++++.++.++..||.++- +|-..|+. -+-++..+|+.+++|
T Consensus 11 ~~~~~~~is~~~i~~hl~~y---~~P~~Qr~------iirIl~m~Piyai~S 53 (274)
T PF03619_consen 11 FALLTILISLFLIYQHLRNY---SKPEEQRY------IIRILLMVPIYAICS 53 (274)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCHHHHHH------HHHHHHHhHHHHHHH
Confidence 46788899999999999986 34555654 345778899998875
No 3
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=53.29 E-value=9.8 Score=28.65 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhc
Q 032918 86 IGVLVIITEIRGI 98 (130)
Q Consensus 86 I~~YLl~qHi~~~ 98 (130)
+|.|=+|||+|++
T Consensus 30 lgLYrlQeHvrks 42 (118)
T PF10167_consen 30 LGLYRLQEHVRKS 42 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999986
No 4
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=35.01 E-value=44 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhc
Q 032918 79 AGVYCLIIGVLVIITEIRGIGGFRNCECN 107 (130)
Q Consensus 79 G~vi~L~I~~YLl~qHi~~~GG~r~aF~q 107 (130)
-.++.++.+.||..+|++...+.-++++.
T Consensus 8 l~liGl~~s~~l~~~~~~~~~~~~~~~C~ 36 (137)
T PF07884_consen 8 LSLIGLLVSIYLLYVEMGLSRPGYSPFCD 36 (137)
T ss_dssp HHHHHHHHHHHHHHHHHH-------S---
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCCC
Confidence 45778899999999999887655566664
No 5
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=32.49 E-value=39 Score=25.33 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHH
Q 032918 76 GIAAGVYCLIIGVLVIIT 93 (130)
Q Consensus 76 ~~~G~vi~L~I~~YLl~q 93 (130)
|..|++.|+++.+|++.+
T Consensus 48 S~~~v~~c~~lnaY~l~~ 65 (102)
T PLN02595 48 TYLGIASCTALAVYVLSK 65 (102)
T ss_pred hHHHhHHHHHHHHHHhhh
Confidence 446899999999997643
No 6
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=31.94 E-value=2.7e+02 Score=24.64 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=54.1
Q ss_pred CCccccccchhhHHHHHHHHhhchhhhHhHhcccchhHHHHHHHHHHHhcCC--CCchhhhhHhhcChhHHHhhhh----
Q 032918 1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPK--TFPVARFILFVITPAWLANGLR---- 74 (130)
Q Consensus 1 ldrtnwkT~i~tslLVPyi~lslP~~if~~~rGe~G~WiAFlavv~RLFfp~--~fP~a~iLLivvaP~~~~~~~R---- 74 (130)
.|+++||..++..+-+-....+++-. ++..+.-.+...+-++....|-- -|= ..+|=-++.|+..++.-|
T Consensus 94 aD~~~~Rk~~l~~~~~~~~~~~~~l~---~v~~~~~~~~~~l~iia~v~~~~~~vfy-na~LP~la~~~~~~~~~~~~~~ 169 (477)
T PF11700_consen 94 ADYGGRRKRFLLIFTLLGVLATALLW---FVSPGQWWLALVLFIIANVGYEASNVFY-NAYLPDLARPEPRVRAAREPSA 169 (477)
T ss_pred HcccccchHHHHHHHHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhcCCChhhhhhhhhhc
Confidence 39999999999888888877776433 33333335555556666666621 111 233334455555532222
Q ss_pred -----------------cch---------hHHHHHHHHHHHHHHHH
Q 032918 75 -----------------EGI---------AAGVYCLIIGVLVIITE 94 (130)
Q Consensus 75 -----------------~~~---------~G~vi~L~I~~YLl~qH 94 (130)
|.+ .|.+++++++..+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~ 215 (477)
T PF11700_consen 170 NGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISP 215 (477)
T ss_pred cCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 443 68888888888776654
No 7
>KOG4523 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=33 Score=27.29 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhc
Q 032918 86 IGVLVIITEIRGI 98 (130)
Q Consensus 86 I~~YLl~qHi~~~ 98 (130)
+|.|-+|||+|++
T Consensus 30 l~LY~iQeHirna 42 (157)
T KOG4523|consen 30 LALYRIQEHIRNA 42 (157)
T ss_pred HHHHHHHHHHHhh
Confidence 5789999999986
No 8
>COG3008 PqiB Paraquat-inducible protein B [General function prediction only]
Probab=29.63 E-value=48 Score=31.15 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC-cchhhhccCcc
Q 032918 78 AAGVYCLIIGVLVIITEIRGIGG-FRNCECNLHSF 111 (130)
Q Consensus 78 ~G~vi~L~I~~YLl~qHi~~~GG-~r~aF~q~~~i 111 (130)
.==+|.|+||++|+++|++..|= +.--|+.+.||
T Consensus 25 llPivAl~igawL~~~~~~~~G~~Itl~f~saeGI 59 (553)
T COG3008 25 LLPIVALLIGAWLLFQHVQDRGPEITLTFESAEGI 59 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcccc
Confidence 33478999999999999999863 33345555554
No 9
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=29.60 E-value=46 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=20.8
Q ss_pred hhhhHhHhcccchhHHHH---HHHHHHHhcCCCCch
Q 032918 24 PTVLFKILRGQFGCWVAC---LAVGANLFYPKTFPV 56 (130)
Q Consensus 24 P~~if~~~rGe~G~WiAF---lavv~RLFfp~~fP~ 56 (130)
...+-++.+||-+||+-- ++++.+.+=|-+.|-
T Consensus 65 ~~i~~~fy~GE~~K~~lTi~lf~l~f~~~~~l~~~~ 100 (124)
T PRK05760 65 KAIVRSFYAGEAGKIIITAVLFALAFAGVQPLLPPL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence 445778999999999754 344444444445444
No 10
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=29.57 E-value=62 Score=28.97 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHHHHHHhhhcC
Q 032918 80 GVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS 130 (130)
Q Consensus 80 ~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~v~pi~~L~~ 130 (130)
.++.+.++++.++||.+.- +|.-.|..- +.+++.+||.+++|
T Consensus 44 ~vit~~ls~~~I~~HL~~y---~~P~~qr~i------v~il~mvPIys~~S 85 (386)
T KOG2641|consen 44 VVITILLSLFHIYQHLRYY---SNPREQRPI------VRILFMVPIYSVAS 85 (386)
T ss_pred HHHHHHHHHHHHHHHHHHc---CChhhhchh------hhhhhhhHHHHHHH
Confidence 4556778899999999987 555556542 56677889887764
No 11
>COG3223 Predicted membrane protein [Function unknown]
Probab=29.23 E-value=97 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCC-CCch---------hhhhHhhcChhHHHhhhhcchhHHHHHHHHHHHHHHH
Q 032918 38 WVACLAVGANLFYPK-TFPV---------ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIIT 93 (130)
Q Consensus 38 WiAFlavv~RLFfp~-~fP~---------a~iLLivvaP~~~~~~~R~~~~G~vi~L~I~~YLl~q 93 (130)
..-|+|+++.-|=.+ |||. |.+=|+++--+..++++ -+.|++.-|++|.+++..
T Consensus 68 YFEFiaLIvkYFks~~HfPLRyfIYiGITAiiRLiIvdH~~~~~~l--l~s~AILlLvi~l~l~~~ 131 (138)
T COG3223 68 YFEFIALIVKYFKSGFHFPLRYFIYIGITAIIRLIIVDHESPIDTL--LYSGAILLLVIALFLVNS 131 (138)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhcCCCCcchH--HHHHHHHHHHHHHHHHHh
Confidence 445788888888877 9998 66666666544444422 147888888999888753
No 12
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=28.30 E-value=52 Score=19.89 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 032918 83 CLIIGVLVIITEIRGI 98 (130)
Q Consensus 83 ~L~I~~YLl~qHi~~~ 98 (130)
+++|.|-|++.|.+..
T Consensus 9 ~lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSV 24 (30)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhHH
Confidence 6889999999998754
No 13
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=26.83 E-value=1.6e+02 Score=20.75 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHHHHHHh
Q 032918 75 EGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVL 126 (130)
Q Consensus 75 ~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~v~pi~ 126 (130)
.-+.-+.+|.++|..+.+...+..| ++.|+..|++.-.+..++.++-++.
T Consensus 40 ~lq~l~~~~~~~G~~~~~~~~~~~~--~~h~~s~H~~lG~~~~~l~~~Q~~~ 89 (137)
T PF03188_consen 40 ILQVLALVFAIIGFVAIFINKNRNG--KPHFKSWHSILGLATFVLALLQPLL 89 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccC--CCCCCCchhhhhHHHHHHHHHHHHH
Confidence 3356788888999988887665553 4777888887666666666665554
No 14
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=26.01 E-value=4.6e+02 Score=23.14 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=35.8
Q ss_pred ChhHHHhhhhcchhHHHHHHHHHHHHHHHHHHhcCCcch---hhhccCcchhhHHHH
Q 032918 65 TPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRN---CECNLHSFSYCLGVA 118 (130)
Q Consensus 65 aP~~~~~~~R~~~~G~vi~L~I~~YLl~qHi~~~GG~r~---aF~q~~~i~~Ti~Ii 118 (130)
.++++.+.+|....--++-++++.+..+|-++.+|=.+. .|.+ .++...+.+.
T Consensus 240 ~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~-~~ip~~li~~ 295 (385)
T PF04165_consen 240 RRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSS-LGIPPFLIIA 295 (385)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHh-CCCcHHHHHH
Confidence 456677778887777788888999988888888764332 3444 3555544443
No 15
>COG3136 GlpM Uncharacterized membrane protein required for alginate biosynthesis [General function prediction only]
Probab=25.60 E-value=1.4e+02 Score=22.70 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHHHHHHH---HhcCC---CCch-hhhhHhhcChhHHHhhhhcchhHHHHH------HHHHHHHHHHHHHhc
Q 032918 40 ACLAVGAN---LFYPK---TFPV-ARFILFVITPAWLANGLREGIAAGVYC------LIIGVLVIITEIRGI 98 (130)
Q Consensus 40 AFlavv~R---LFfp~---~fP~-a~iLLivvaP~~~~~~~R~~~~G~vi~------L~I~~YLl~qHi~~~ 98 (130)
+.++++-| -+.|+ -||- |+|-.-+|+-..=++.+|++..-..-+ -+.+||+..+|.|-.
T Consensus 15 ~lI~~lSktr~yyiaGliPLfPTFAlIAhyiV~~er~~~~lR~ti~fgmwsIipYf~yL~al~~f~~~~rl~ 86 (111)
T COG3136 15 LLIALLSKTRNYYIAGLIPLFPTFALIAHYIVGSERGIEALRTTILFGMWSIIPYFAYLGALWYFIGRMRLP 86 (111)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555554 34455 3454 888888888888888899998544333 468999999999865
No 16
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=25.49 E-value=1.5e+02 Score=21.15 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=35.5
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHHHHHHh
Q 032918 74 REGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVL 126 (130)
Q Consensus 74 R~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~v~pi~ 126 (130)
+.-+.-+.+|.++|..+.+...+..| ++.|+..|++.-....++..+-|+.
T Consensus 38 ~~lq~~a~~~~~~g~~~~~~~~~~~~--~~~~~s~H~~lGl~~~~l~~~Q~~~ 88 (129)
T smart00665 38 VVLQILALVLGVIGLLAIFISHNESG--IANFYSLHSWLGLAAFVLAGLQWLS 88 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccC--CCCccchhHHHHHHHHHHHHHHHHH
Confidence 44456778888899998887766554 4678888886666666666655554
No 17
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=24.91 E-value=49 Score=27.87 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 032918 82 YCLIIGVLVIITE 94 (130)
Q Consensus 82 i~L~I~~YLl~qH 94 (130)
-|++|||||+++|
T Consensus 161 TG~liAc~lmy~~ 173 (225)
T KOG1720|consen 161 TGTLIACYLMYEY 173 (225)
T ss_pred hhHHHHHHHHHHh
Confidence 3789999999986
No 18
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=24.45 E-value=59 Score=28.70 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHhhchhhhHhHhcccch
Q 032918 10 MQTNLLVLYLFTSFPTVLFKILRGQFG 36 (130)
Q Consensus 10 i~tslLVPyi~lslP~~if~~~rGe~G 36 (130)
-.++|+|||+++.+=..++..++....
T Consensus 70 k~~tLivPyi~f~li~~I~~~~~~~~~ 96 (343)
T COG3594 70 KARTLIVPYIFFFLIYSILYFLLRKFN 96 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357899999999999999888776665
No 19
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=23.13 E-value=1.4e+02 Score=21.03 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=24.4
Q ss_pred HhhcChhHHHhhhhcchhHHHHHHHHHHHHHHHHHHh
Q 032918 61 LFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRG 97 (130)
Q Consensus 61 LivvaP~~~~~~~R~~~~G~vi~L~I~~YLl~qHi~~ 97 (130)
+++.....++..-|+.+.+.++++++.+.+.....+.
T Consensus 3 ~~l~~~~i~~s~SR~~~i~~~~~~~~~~~~~~~~~~~ 39 (163)
T PF04932_consen 3 LILSLLAIFLSGSRGAWIALLIALILFLLLFYRKRRK 39 (163)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666668888888888887766665554443
No 20
>PRK14889 VKOR family protein; Provisional
Probab=22.40 E-value=1.3e+02 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcc
Q 032918 78 AAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSF 111 (130)
Q Consensus 78 ~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i 111 (130)
+-.++.++.+.|+..||.+..+ .+++|..|++
T Consensus 14 ~~~~iGl~~S~~l~~~~~~~~~--~~~~C~~~~~ 45 (143)
T PRK14889 14 AFSLVGLIASIASYLLFTLLVK--PPPFCTINSV 45 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCCC
Confidence 4456788899999999965433 3677765543
No 21
>PHA02898 virion envelope protein; Provisional
Probab=22.22 E-value=93 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCc-chhhhccCcchhhHHHHHH
Q 032918 76 GIAAGVYCLIIGVLVIITEIRGIGGF-RNCECNLHSFSYCLGVAFL 120 (130)
Q Consensus 76 ~~~G~vi~L~I~~YLl~qHi~~~GG~-r~aF~q~~~i~~Ti~Ii~L 120 (130)
-.++.++-|+.||--++-++++++.- .+.-..-++++.-+|++++
T Consensus 14 vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~ 59 (92)
T PHA02898 14 VVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILI 59 (92)
T ss_pred HHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHH
Confidence 35777888999999999999999764 3444444444555555443
No 22
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=21.73 E-value=3.7e+02 Score=20.61 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=36.3
Q ss_pred hhcChhHHHhhhhcchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHHHHHHhh
Q 032918 62 FVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLY 127 (130)
Q Consensus 62 ivvaP~~~~~~~R~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~v~pi~~ 127 (130)
.-++|...-- .+.++++-+++|++-+.+=+|....-.++=+-.++-.......++++.|+..
T Consensus 25 ~YI~P~~~~~----~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 25 LYIHPRYIPL----LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLI 86 (182)
T ss_pred HHhCccHHHH----HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 3456655444 4577888888888888777766543322211111112556667778888764
No 23
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=21.73 E-value=1.4e+02 Score=22.60 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=20.7
Q ss_pred hchhhhHhHhcccchhHHHHHHHHHH
Q 032918 22 SFPTVLFKILRGQFGCWVACLAVGAN 47 (130)
Q Consensus 22 slP~~if~~~rGe~G~WiAFlavv~R 47 (130)
+.|..+=++-|||-+||+.-+++.+=
T Consensus 65 ~~~~~~~sFy~GE~~K~ilTivlf~l 90 (126)
T PRK06099 65 KNSSKLTAFYRGEAIKFILTIVLIVI 90 (126)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78888999999999999865554443
No 24
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=21.64 E-value=1.6e+02 Score=21.95 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 032918 78 AAGVYCLIIGVLVIITEIRG 97 (130)
Q Consensus 78 ~G~vi~L~I~~YLl~qHi~~ 97 (130)
+-..+.++.+.|+.+||.+.
T Consensus 10 ~l~~iGl~~S~yl~~~~~~~ 29 (142)
T smart00756 10 ILGLIGLLASLYLTYEKLTL 29 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999865
No 25
>PHA03048 IMV membrane protein; Provisional
Probab=20.27 E-value=1.4e+02 Score=22.13 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHH
Q 032918 75 EGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFL 120 (130)
Q Consensus 75 ~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L 120 (130)
+-.++.++-|+.||--++-+++.+.---+....-.+++.-+|++++
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~ 58 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMT 58 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 3357788889999999999999885444444444455555555543
Done!